FvH4_2g40210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0002264
Physical Location & Seq
Forward (+)
28698115 .. 28698696
582 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g40210.t1

Sequence Viewer

Length: 459 bp
ATGATTAGCAGCCCAACTGAACTGGTGAAGCTCTGTGATTCTCCAACAAAAGAAAGAAAGGTGGAAATCCTCATCGAATCCAATAACACTGCTGAATCGCAAACAGGTTGCAAAGTAGAAGAACCAAATGCTTCCAAATACACTTATTGTGACATCTGCAAAAATCGTGATCACGACTTGGAGATGTGCCCTGACAAATTTGGGAAAGTTATAACAGTTTGTAGCGTATGTGGTCATCTCCCATGTAAAAATGAGGCTGACGACCACAAGGAACACCATTATGTATGTTTACTATATTGTCATCTTTGTGATGAGATTGGTGATCACTTGACTCCACTGTGCCCGGACATGGAATCCGACTTGGGTGACGAGGACTGGGATTCTGACACGGATGATGATAACTGGGATAATCAGGGTGATTTGCCGGAGAATACACAGACGGCCGCCGCTGCTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

17.0

Weight (kDa)

4.32

Isoelectric Point (pI)

44.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 212
AciI CCGC 2 cut(s) 444, 447
AcoI YGGCCR 1 cut(s) 441
AcsI RAATTY 1 cut(s) 197
AfiI CCNNNNNNNGG 1 cut(s) 349
AluBI AGCT 1 cut(s) 31
AluI AGCT 1 cut(s) 31
AoxI GGCC 1 cut(s) 441
ApeKI GCWGC 3 cut(s) 9, 449, 452
ApoI RAATTY 1 cut(s) 197
AsuC2I CCSGG 1 cut(s) 344
AsuHPI GGTGA 4 cut(s) 37, 332, 377, 428
BaeGI GKGCMC 2 cut(s) 191, 344
BbvI GCAGC 3 cut(s) 21, 436, 439
BceAI ACGGC 1 cut(s) 456
BclI TGATCA 2 cut(s) 169, 322
BcnI CCSGG 1 cut(s) 344
BisI GCNGC 5 cut(s) 10, 444, 447, 450, 453
BlsI GCNGC 5 cut(s) 11, 445, 448, 451, 454
Bme1390I CCNGG 1 cut(s) 344
BmrFI CCNGG 1 cut(s) 344
BmrI ACTGGG 2 cut(s) 385, 412
BmuI ACTGGG 2 cut(s) 385, 412
BpuMI CCSGG 1 cut(s) 344
Bsc4I CCNNNNNNNGG 1 cut(s) 349
Bse1I ACTGG 3 cut(s) 27, 380, 407
BseGI GGATG 1 cut(s) 397
BseLI CCNNNNNNNGG 1 cut(s) 349
BseNI ACTGG 3 cut(s) 27, 380, 407
BseSI GKGCMC 2 cut(s) 191, 344
BseX3I CGGCCG 1 cut(s) 441
BseXI GCAGC 3 cut(s) 21, 436, 439
Bsh1285I CGRYCG 1 cut(s) 444
BshFI GGCC 1 cut(s) 443
BsiEI CGRYCG 1 cut(s) 444
BsiSI CCGG 2 cut(s) 344, 425
BslI CCNNNNNNNGG 1 cut(s) 349
BsnI GGCC 1 cut(s) 443
Bsp1286I GDGCHC 2 cut(s) 191, 344
Bsp143I GATC 2 cut(s) 169, 322
BspACI CCGC 2 cut(s) 444, 447
BspANI GGCC 1 cut(s) 443
BsrI ACTGG 3 cut(s) 27, 380, 407
BssMI GATC 2 cut(s) 169, 322
Bst4CI ACNGT 2 cut(s) 217, 339
BstF5I GGATG 1 cut(s) 397
BstKTI GATC 2 cut(s) 172, 325
BstMBI GATC 2 cut(s) 169, 322
BstMCI CGRYCG 1 cut(s) 444
BstMWI GCNNNNNNNGC 2 cut(s) 449, 452
BstSCI CCNGG 1 cut(s) 342
BstSLI GKGCMC 2 cut(s) 191, 344
BstV1I GCAGC 3 cut(s) 21, 436, 439
BstZI CGGCCG 1 cut(s) 441
BsuRI GGCC 1 cut(s) 443
BtsCI GGATG 1 cut(s) 397
BtsI GCAGTG 1 cut(s) 87
BtsIMutI CAGTG 2 cut(s) 87, 335
CviAII CATG 2 cut(s) 243, 349
CviJI RGCY 4 cut(s) 12, 31, 257, 443
CviKI_1 RGCY 4 cut(s) 12, 31, 257, 443
DpnI GATC 2 cut(s) 171, 324
DpnII GATC 2 cut(s) 169, 322
EaeI YGGCCR 1 cut(s) 441
EagI CGGCCG 1 cut(s) 441
EclXI CGGCCG 1 cut(s) 441
Eco52I CGGCCG 1 cut(s) 441
FaeI CATG 2 cut(s) 246, 352
FaiI YATR 8 cut(s) 212, 229, 244, 282, 286, 295, 350, 457
FatI CATG 2 cut(s) 242, 348
FbaI TGATCA 2 cut(s) 169, 322
Fnu4HI GCNGC 5 cut(s) 10, 444, 447, 450, 453
FokI GGATG 1 cut(s) 404
Fsp4HI GCNGC 5 cut(s) 10, 444, 447, 450, 453
GluI GCNGC 5 cut(s) 10, 444, 447, 450, 453
HaeIII GGCC 1 cut(s) 443
HapII CCGG 2 cut(s) 344, 425
Hin1II CATG 2 cut(s) 246, 352
HinfI GANTC 6 cut(s) 38, 77, 95, 331, 353, 380
HpaII CCGG 2 cut(s) 344, 425
HphI GGTGA 4 cut(s) 37, 332, 377, 428
Hpy166II GTNNAC 1 cut(s) 290
Hpy188I TCNGA 2 cut(s) 358, 385
Hpy188III TCNNGA 2 cut(s) 167, 173
Hpy8I GTNNAC 1 cut(s) 290
HpyCH4III ACNGT 2 cut(s) 217, 339
HpyCH4V TGCA 3 cut(s) 111, 159, 455
HpyF10VI GCNNNNNNNGC 2 cut(s) 449, 452
Hsp92II CATG 2 cut(s) 246, 352
Ksp22I TGATCA 2 cut(s) 169, 322
Kzo9I GATC 2 cut(s) 169, 322
LpnPI CCDG 8 cut(s) 8, 90, 204, 357, 361, 388, 398, 438
Lsp1109I GCAGC 3 cut(s) 21, 436, 439
MaeIII GTNAC 2 cut(s) 149, 365
MalI GATC 2 cut(s) 171, 324
MboI GATC 2 cut(s) 169, 322
MboII GAAGA 1 cut(s) 131
MhlI GDGCHC 2 cut(s) 191, 344
MluCI AATT 1 cut(s) 197
MlyI GAGTC 1 cut(s) 325
MmeI TCCRAC 2 cut(s) 68, 381
MnlI CCTC 3 cut(s) 80, 247, 364
MslI CAYNNNNRTG 2 cut(s) 279, 306
MspA1I CMGCKG 1 cut(s) 449
MspI CCGG 2 cut(s) 344, 425
MspR9I CCNGG 1 cut(s) 344
MwoI GCNNNNNNNGC 2 cut(s) 449, 452
NciI CCSGG 1 cut(s) 344
NdeII GATC 2 cut(s) 169, 322
NlaIII CATG 2 cut(s) 246, 352
NmuCI GTSAC 2 cut(s) 149, 365
PfeI GAWTC 5 cut(s) 38, 77, 95, 353, 380
PkrI GCNGC 5 cut(s) 11, 445, 448, 451, 454
PleI GAGTC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 325
PsiI TTATAA 1 cut(s) 212
RseI CAYNNNNRTG 2 cut(s) 279, 306
SatI GCNGC 5 cut(s) 10, 444, 447, 450, 453
Sau3AI GATC 2 cut(s) 169, 322
SchI GAGTC 1 cut(s) 325
ScrFI CCNGG 1 cut(s) 344
SduI GDGCHC 2 cut(s) 191, 344
SetI ASST 3 cut(s) 33, 63, 109
SmiMI CAYNNNNRTG 2 cut(s) 279, 306
Sse9I AATT 1 cut(s) 197
SsiI CCGC 2 cut(s) 444, 447
StyD4I CCNGG 1 cut(s) 342
TaaI ACNGT 2 cut(s) 217, 339
TaqI TCGA 1 cut(s) 75
TasI AATT 1 cut(s) 197
TauI GCSGC 2 cut(s) 446, 449
TfiI GAWTC 5 cut(s) 38, 77, 95, 353, 380
TscAI CASTG 2 cut(s) 94, 342
TseFI GTSAC 2 cut(s) 149, 365
TseI GCWGC 3 cut(s) 9, 449, 452
Tsp45I GTSAC 2 cut(s) 149, 365
TspGWI ACGGA 1 cut(s) 404
TspRI CASTG 2 cut(s) 94, 342
XapI RAATTY 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.