Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002264

Physical Location & Seq

Genomic Coordinates Reverse (-)

1819965 .. 1821162

Gene Structure 1198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28439

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGATCTGCAAAGAGGTGTACCATAAGGCTCCTGGTATGCTTTTTGTTTCAGGGTTCCTGAAGAAAATTATTCACCACTTTCTTGGACTGCTCCGAGTGTTTCGAGGAGAACAAGATACAGCCGCCAGCGCAAGTGGTCAGCACCAGAAGCAGGCTCAGCCGGCGAAGCTTCATGATCCTCGACCGGGAGAACTCGAGGAGATTCTCATCGCTACTGGTAGCAAGGTAGAAGAACGAGACCCTTCTGATGACAGGCATTGTAGGATTTGCGATACAAGTGGTGATCATAGTACTGAAACGTGCCCCAAAAGATCCAAGGCATATGTAGTGCTTTGTGGGATTTGTGATGATGGCCCATGCCAAAATGAGGCTGACCACAAGGAAGAACATTACGAAGAACTCCTTTTTTGTTATATTTGTAACAAGGTTGGTGAGCACTGGACTGAAAATTGCCCTGACAACGATTGCGACTTTGATCCTCCCAATGGCTGGGACCTTACAGAGAATAAACGGATAGATTTGTTCCCTCCGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

178

Amino Acids

20.18

Weight (kDa)

5.21

Isoelectric Point (pI)

44.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002264)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04712 FvH4_2g40191 FvH4_2g40203 FvH4_2g40210 FvH4_2g40220 FvH4_3g18081
rosa_chinensis	RchiOBHm_Chr1g0378061 RchiOBHm_Chr5g0003061 RchiOBHm_Chr5g0030501
rosa_laevigata	RLG00000031096 RLG00000031106 RLG00000031109
rosa_multiflora	Rmu_sc0000280.1_g000001 Rmu_sc0015917.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019880 Rroxscaffold_1G00019910 Rroxscaffold_1G00049800 Rroxscaffold_1G00072540 Rroxscaffold_1G00073090
rosa_rugosa	Rorug04G0396300 Rorug04G0396400 Rorug04G0396500 Rorug04G0396600 Rorug04G0401800 Rorug05G0117400 Rorug05G0334100 Rorug05G0334100
rosa_samantha	Rh5AG028100 Rh5AG028200 Rh5AG210200 Rh5AG396800 Rh5AG396900 Rh5BG028300 Rh5BG209400 Rh5BG408900 Rh5BG409100 Rh5CG027500 Rh5CG030600 Rh5CG030700 Rh5CG433600 Rh5CG433800
rosa_wichuraiana	Rw5G002290 Rw5G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	489
AciI	CCGC	1 cut(s)	123
AclWI	GGATC	3 cut(s)	170, 306, 470
AcuI	CTGAAG	1 cut(s)	80
AfaI	GTAC	2 cut(s)	20, 292
AfiI	CCNNNNNNNGG	5 cut(s)	151, 185, 367, 485, 489
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
Alw21I	GWGCWC	1 cut(s)	438
Alw26I	GTCTC	1 cut(s)	231
AlwI	GGATC	3 cut(s)	170, 306, 470
Ama87I	CYCGRG	1 cut(s)	194
AoxI	GGCC	1 cut(s)	352
AspLEI	GCGC	1 cut(s)	131
AspS9I	GGNCC	2 cut(s)	353, 493
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	3 cut(s)	65, 293, 443
AvaI	CYCGRG	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	493
BaeGI	GKGCMC	1 cut(s)	305
Bbv12I	GWGCWC	1 cut(s)	438
BccI	CCATC	1 cut(s)	344
BciT130I	CCWGG	1 cut(s)	33
BclI	TGATCA	1 cut(s)	283
BcnI	CCSGG	1 cut(s)	186
BcoDI	GTCTC	1 cut(s)	231
BisI	GCNGC	1 cut(s)	123
BlpI	GCTNAGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	124
BmcAI	AGTACT	1 cut(s)	292
Bme1390I	CCNGG	2 cut(s)	33, 186
Bme18I	GGWCC	1 cut(s)	493
BmeT110I	CYCGRG	1 cut(s)	194
BmgT120I	GGNCC	2 cut(s)	353, 493
BmiI	GGNNCC	3 cut(s)	30, 56, 494
BmrFI	CCNGG	2 cut(s)	33, 186
Bpu1102I	GCTNAGC	1 cut(s)	156
BpuMI	CCSGG	1 cut(s)	186
BsaBI	GATNNNNATC	1 cut(s)	206
BsaI	GGTCTC	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	315
Bsc4I	CCNNNNNNNGG	5 cut(s)	151, 185, 367, 485, 489
Bse118I	RCCGGY	1 cut(s)	160
Bse1I	ACTGG	2 cut(s)	220, 443
Bse8I	GATNNNNATC	1 cut(s)	206
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	315
BseJI	GATNNNNATC	1 cut(s)	206
BseLI	CCNNNNNNNGG	5 cut(s)	151, 185, 367, 485, 489
BseMII	CTCAG	1 cut(s)	170
BseNI	ACTGG	2 cut(s)	220, 443
BseRI	GAGGAG	2 cut(s)	120, 212
BseSI	GKGCMC	1 cut(s)	305
BseYI	CCCAGC	1 cut(s)	489
Bsh1285I	CGRYCG	1 cut(s)	185
BshFI	GGCC	1 cut(s)	354
BsiEI	CGRYCG	1 cut(s)	185
BsiHKAI	GWGCWC	1 cut(s)	438
BsiHKCI	CYCGRG	1 cut(s)	194
BsiSI	CCGG	2 cut(s)	161, 185
BslFI	GGGAC	1 cut(s)	506
BslI	CCNNNNNNNGG	5 cut(s)	151, 185, 367, 485, 489
BsmAI	GTCTC	1 cut(s)	231
BsmFI	GGGAC	1 cut(s)	506
BsnI	GGCC	1 cut(s)	354
Bso31I	GGTCTC	1 cut(s)	231
BsoBI	CYCGRG	1 cut(s)	194
Bsp1286I	GDGCHC	2 cut(s)	305, 438
Bsp143I	GATC	5 cut(s)	3, 175, 283, 311, 475
Bsp1720I	GCTNAGC	1 cut(s)	156
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	1 cut(s)	354
BspCNI	CTCAG	1 cut(s)	169
BspHI	TCATGA	1 cut(s)	172
BspLI	GGNNCC	3 cut(s)	30, 56, 494
BspPI	GGATC	3 cut(s)	170, 306, 470
BspTNI	GGTCTC	1 cut(s)	231
BsrFI	RCCGGY	1 cut(s)	160
BsrI	ACTGG	2 cut(s)	220, 443
BssAI	RCCGGY	1 cut(s)	160
BssECI	CCNNGG	1 cut(s)	315
BssMI	GATC	5 cut(s)	3, 175, 283, 311, 475
BssT1I	CCWWGG	1 cut(s)	315
Bst2UI	CCWGG	1 cut(s)	33
BstC8I	GCNNGC	3 cut(s)	127, 153, 162
BstDEI	CTNAG	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	5 cut(s)	6, 178, 286, 314, 478
BstMAI	GTCTC	1 cut(s)	231
BstMBI	GATC	5 cut(s)	3, 175, 283, 311, 475
BstMCI	CGRYCG	1 cut(s)	185
BstMWI	GCNNNNNNNGC	5 cut(s)	128, 148, 157, 161, 166
BstNI	CCWGG	1 cut(s)	33
BstSCI	CCNGG	2 cut(s)	31, 184
BstSLI	GKGCMC	1 cut(s)	305
BstX2I	RGATCY	1 cut(s)	311
BstXI	CCANNNNNNTGG	1 cut(s)	83
BstYI	RGATCY	1 cut(s)	311
BsuRI	GGCC	1 cut(s)	354
BtgZI	GCGATG	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	436
Cac8I	GCNNGC	3 cut(s)	127, 153, 162
CciI	TCATGA	1 cut(s)	172
CfoI	GCGC	1 cut(s)	131
Cfr10I	RCCGGY	1 cut(s)	160
Cfr13I	GGNCC	2 cut(s)	353, 493
Csp6I	GTAC	2 cut(s)	19, 291
CviAII	CATG	2 cut(s)	173, 357
CviJI	RGCY	8 cut(s)	29, 122, 155, 160, 169, 354, 371, 489
CviKI_1	RGCY	8 cut(s)	29, 122, 155, 160, 169, 354, 371, 489
CviQI	GTAC	2 cut(s)	19, 291
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	5 cut(s)	5, 177, 285, 313, 477
DpnII	GATC	5 cut(s)	3, 175, 283, 311, 475
Eco130I	CCWWGG	1 cut(s)	315
Eco31I	GGTCTC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	493
Eco57I	CTGAAG	1 cut(s)	80
Eco88I	CYCGRG	1 cut(s)	194
EcoO109I	RGGNCCY	1 cut(s)	493
EcoRII	CCWGG	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	315
FaeI	CATG	2 cut(s)	176, 360
FaiI	YATR	9 cut(s)	24, 38, 174, 288, 322, 324, 358, 414, 535
FalI	AAGNNNNNCTT	2 cut(s)	387, 419
FaqI	GGGAC	1 cut(s)	506
FatI	CATG	2 cut(s)	172, 356
FauNDI	CATATG	1 cut(s)	322
FbaI	TGATCA	1 cut(s)	283
Fnu4HI	GCNGC	1 cut(s)	123
Fsp4HI	GCNGC	1 cut(s)	123
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	1 cut(s)	123
GsaI	CCCAGC	1 cut(s)	493
HaeIII	GGCC	1 cut(s)	354
HapII	CCGG	2 cut(s)	161, 185
HhaI	GCGC	1 cut(s)	131
Hin1II	CATG	2 cut(s)	176, 360
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	1 cut(s)	202
HpaII	CCGG	2 cut(s)	161, 185
HphI	GGTGA	3 cut(s)	65, 293, 443
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	2 cut(s)	95, 247
Hpy188III	TCNNGA	2 cut(s)	58, 173
Hpy8I	GTNNAC	1 cut(s)	19
HpyAV	CCTTC	1 cut(s)	252
HpyCH4IV	ACGT	1 cut(s)	299
HpyCH4V	TGCA	1 cut(s)	9
HpyF10VI	GCNNNNNNNGC	5 cut(s)	128, 148, 157, 161, 166
HpyF3I	CTNAG	1 cut(s)	156
HpySE526I	ACGT	1 cut(s)	299
Hsp92II	CATG	2 cut(s)	176, 360
HspAI	GCGC	1 cut(s)	129
KroI	GCCGGC	1 cut(s)	160
KroNI	GCCGGC	1 cut(s)	162
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	5 cut(s)	3, 175, 283, 311, 475
LmnI	GCTCC	2 cut(s)	34, 96
MaeII	ACGT	1 cut(s)	299
MaeIII	GTNAC	1 cut(s)	419
MalI	GATC	5 cut(s)	5, 177, 285, 313, 477
MboI	GATC	5 cut(s)	3, 175, 283, 311, 475
MboII	GAAGA	4 cut(s)	73, 242, 395, 407
MflI	RGATCY	1 cut(s)	311
MhlI	GDGCHC	2 cut(s)	305, 438
MluCI	AATT	2 cut(s)	66, 448
MnlI	CCTC	7 cut(s)	7, 98, 189, 190, 361, 489, 537
MroNI	GCCGGC	1 cut(s)	160
MspI	CCGG	2 cut(s)	161, 185
MspR9I	CCNGG	2 cut(s)	33, 186
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	5 cut(s)	128, 148, 157, 161, 166
NaeI	GCCGGC	1 cut(s)	162
NciI	CCSGG	1 cut(s)	186
NdeI	CATATG	1 cut(s)	322
NdeII	GATC	5 cut(s)	3, 175, 283, 311, 475
NgoMIV	GCCGGC	1 cut(s)	160
NlaIII	CATG	2 cut(s)	176, 360
NlaIV	GGNNCC	3 cut(s)	30, 56, 494
PaeR7I	CTCGAG	1 cut(s)	194
PagI	TCATGA	1 cut(s)	172
PdiI	GCCGGC	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	202
PflMI	CCANNNNNTGG	1 cut(s)	489
PkrI	GCNGC	1 cut(s)	124
PpuMI	RGGWCCY	1 cut(s)	493
Psp5II	RGGWCCY	1 cut(s)	493
Psp6I	CCWGG	1 cut(s)	31
PspFI	CCCAGC	1 cut(s)	489
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	3 cut(s)	30, 56, 494
PspPI	GGNCC	2 cut(s)	353, 493
PspPPI	RGGWCCY	1 cut(s)	493
PspXI	VCTCGAGB	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	311
RsaI	GTAC	2 cut(s)	20, 292
RsaNI	GTAC	2 cut(s)	19, 291
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	5 cut(s)	3, 175, 283, 311, 475
Sau96I	GGNCC	2 cut(s)	353, 493
ScaI	AGTACT	1 cut(s)	292
ScrFI	CCNGG	2 cut(s)	33, 186
SduI	GDGCHC	2 cut(s)	305, 438
SetI	ASST	6 cut(s)	18, 171, 228, 302, 429, 498
Sfr274I	CTCGAG	1 cut(s)	194
SinI	GGWCC	1 cut(s)	493
SlaI	CTCGAG	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	2 cut(s)	66, 448
SsiI	CCGC	1 cut(s)	123
StyD4I	CCNGG	2 cut(s)	31, 184
StyI	CCWWGG	1 cut(s)	315
TaiI	ACGT	1 cut(s)	302
TaqI	TCGA	3 cut(s)	103, 181, 195
TasI	AATT	2 cut(s)	66, 448
TatI	WGTACW	1 cut(s)	290
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	1 cut(s)	202
TscAI	CASTG	1 cut(s)	443
TspDTI	ATGAA	1 cut(s)	161
TspGWI	ACGGA	2 cut(s)	519, 526
TspRI	CASTG	1 cut(s)	443
Van91I	CCANNNNNTGG	1 cut(s)	489
VpaK11BI	GGWCC	1 cut(s)	493
XcmI	CCANNNNNNNNNTGG	1 cut(s)	29
XhoI	CTCGAG	1 cut(s)	194
ZrmI	AGTACT	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.