Rh5CG030700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
1969963 .. 1970298
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG030700.1

Sequence Viewer

Length: 336 bp
ATGGAAGTGCAAACAGGTAGCAGGGTAGAAGAACGAGACCCTTCTGATGACAGGCACTGTAGGATTTGCGATACAAGTGGTGATCATAGTACTGAAAAGTGCCCCGAAAGATCCAAGGCATACGTAGTGCTTTGTGGGATTTGTGATGATGGCCCATGCGAAAATGAGGCTGACCACAAGGAAGAACATTACGAAGAACTCCTTTGTTGTTATATTTGTAACAAGGTTGGTGAGCACTGGACTGAAAATTGCCCTGACAACGATTGTGACTTTGATCCTCCCAACGGCTGGGACATTACAGAGAATAAACGGATAGATTTGTTCCCTCCGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.76

Weight (kDa)

4.38

Isoelectric Point (pI)

50.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 288
AclWI GGATC 2 cut(s) 105, 269
AfaI GTAC 1 cut(s) 91
AfiI CCNNNNNNNGG 2 cut(s) 284, 288
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 1 cut(s) 30
AlwI GGATC 2 cut(s) 105, 269
AlwNI CAGNNNCTG 1 cut(s) 57
AoxI GGCC 1 cut(s) 151
AspS9I GGNCC 1 cut(s) 152
AsuHPI GGTGA 2 cut(s) 92, 242
BaeGI GKGCMC 1 cut(s) 104
Bbv12I GWGCWC 1 cut(s) 237
BccI CCATC 1 cut(s) 143
BceAI ACGGC 1 cut(s) 301
BclI TGATCA 1 cut(s) 82
BcoDI GTCTC 1 cut(s) 30
BfmI CTRYAG 1 cut(s) 58
BmcAI AGTACT 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 152
BsaAI YACGTR 1 cut(s) 124
BsaI GGTCTC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 114
Bsc4I CCNNNNNNNGG 2 cut(s) 284, 288
Bse1I ACTGG 1 cut(s) 242
BseDI CCNNGG 1 cut(s) 114
BseLI CCNNNNNNNGG 2 cut(s) 284, 288
BseNI ACTGG 1 cut(s) 242
BseSI GKGCMC 1 cut(s) 104
BseYI CCCAGC 1 cut(s) 288
BshFI GGCC 1 cut(s) 153
BsiHKAI GWGCWC 1 cut(s) 237
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 2 cut(s) 284, 288
BsmAI GTCTC 1 cut(s) 30
BsmFI GGGAC 1 cut(s) 305
BsnI GGCC 1 cut(s) 153
Bso31I GGTCTC 1 cut(s) 30
Bsp1286I GDGCHC 2 cut(s) 104, 237
Bsp143I GATC 3 cut(s) 82, 110, 274
BspANI GGCC 1 cut(s) 153
BspPI GGATC 2 cut(s) 105, 269
BspTNI GGTCTC 1 cut(s) 30
BsrI ACTGG 1 cut(s) 242
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 3 cut(s) 82, 110, 274
BssT1I CCWWGG 1 cut(s) 114
Bst4CI ACNGT 1 cut(s) 59
BstBAI YACGTR 1 cut(s) 124
BstKTI GATC 3 cut(s) 85, 113, 277
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 3 cut(s) 82, 110, 274
BstSFI CTRYAG 1 cut(s) 58
BstSLI GKGCMC 1 cut(s) 104
BstSNI TACGTA 1 cut(s) 124
BstX2I RGATCY 1 cut(s) 110
BstYI RGATCY 1 cut(s) 110
BsuRI GGCC 1 cut(s) 153
BtsIMutI CAGTG 2 cut(s) 55, 235
CaiI CAGNNNCTG 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 152
Csp6I GTAC 1 cut(s) 90
CviAII CATG 1 cut(s) 156
CviJI RGCY 3 cut(s) 153, 170, 288
CviKI_1 RGCY 3 cut(s) 153, 170, 288
CviQI GTAC 1 cut(s) 90
DpnI GATC 3 cut(s) 84, 112, 276
DpnII GATC 3 cut(s) 82, 110, 274
Eco105I TACGTA 1 cut(s) 124
Eco130I CCWWGG 1 cut(s) 114
Eco31I GGTCTC 1 cut(s) 30
EcoT14I CCWWGG 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 1 cut(s) 159
FaiI YATR 5 cut(s) 87, 121, 157, 213, 334
FalI AAGNNNNNCTT 2 cut(s) 186, 218
FaqI GGGAC 1 cut(s) 305
FatI CATG 1 cut(s) 155
FbaI TGATCA 1 cut(s) 82
GsaI CCCAGC 1 cut(s) 292
HaeIII GGCC 1 cut(s) 153
Hin1II CATG 1 cut(s) 159
HphI GGTGA 2 cut(s) 92, 242
Hpy188I TCNGA 1 cut(s) 46
HpyAV CCTTC 1 cut(s) 51
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 1 cut(s) 10
HpySE526I ACGT 1 cut(s) 123
Hsp92II CATG 1 cut(s) 159
Ksp22I TGATCA 1 cut(s) 82
Kzo9I GATC 3 cut(s) 82, 110, 274
LpnPI CCDG 5 cut(s) 7, 37, 223, 267, 274
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 2 cut(s) 218, 266
MalI GATC 3 cut(s) 84, 112, 276
MboI GATC 3 cut(s) 82, 110, 274
MboII GAAGA 3 cut(s) 41, 194, 206
MflI RGATCY 1 cut(s) 110
MhlI GDGCHC 2 cut(s) 104, 237
MluCI AATT 1 cut(s) 247
MnlI CCTC 3 cut(s) 160, 288, 336
NdeII GATC 3 cut(s) 82, 110, 274
NlaIII CATG 1 cut(s) 159
NmuCI GTSAC 1 cut(s) 266
PflMI CCANNNNNTGG 1 cut(s) 288
Ppu21I YACGTR 1 cut(s) 124
PspFI CCCAGC 1 cut(s) 288
PspPI GGNCC 1 cut(s) 152
PstNI CAGNNNCTG 1 cut(s) 57
PsuI RGATCY 1 cut(s) 110
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
Sau3AI GATC 3 cut(s) 82, 110, 274
Sau96I GGNCC 1 cut(s) 152
ScaI AGTACT 1 cut(s) 91
SduI GDGCHC 2 cut(s) 104, 237
SetI ASST 3 cut(s) 19, 126, 228
SfcI CTRYAG 1 cut(s) 58
SnaBI TACGTA 1 cut(s) 124
Sse9I AATT 1 cut(s) 247
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 1 cut(s) 59
TaiI ACGT 1 cut(s) 126
TasI AATT 1 cut(s) 247
TatI WGTACW 1 cut(s) 89
TscAI CASTG 2 cut(s) 62, 242
TseFI GTSAC 1 cut(s) 266
Tsp45I GTSAC 1 cut(s) 266
TspGWI ACGGA 2 cut(s) 318, 325
TspRI CASTG 2 cut(s) 62, 242
Van91I CCANNNNNTGG 1 cut(s) 288
ZrmI AGTACT 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.