Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002264

Physical Location & Seq

Genomic Coordinates Forward (+)

24292995 .. 24293912

Gene Structure 918 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00019880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGACTATCTGGAAAACTATATGCAGCCTCGTGCACCCTAAGGCACCAGCTACGCTTTCGATTTTTGTTTCAGGGTTTGTGAGGAAGATTATCTGCAATTTCCTTGGTCTAGTTCATCGGTTCAGAGGAGAAAGAGATTCAGCCGCCAGGAGTGTTAGCCCAACTGGACAGCAGGACCTGGAACAACTGATGAAACTCTGTGATCCTCCAACAAAAGAATTAGAGGAAATCCTCATCGAGTCCACTAACGCTGCTGAATCACAAACAGGTTGCAAGGTAGAAGAACCAAAGGCTTCCGGTTACACGTATCATTGTAGGATTTGCGATGATAATTGTGATCACAGCACTGAGACGTGCCCTGACAGATCTGGAAAATTTATAACAGTTTGCAGGGTTTGTGACTGTCTCCCATGTAAAAATGAGGCTGACCACAAGGAAGACCATTATGAAGATTTATTGTTTTGTCATCTTTGTAATACGATTGGTGAGCACTTGACTGAAATGTGCCCTGACATGGATTCCGACATGGGTGACGAGGACTGGGGTTCTGACATGGATGACGAGAACAGGGATGAGAAGGGTGATTTTCCGGAGAATATACACAGCGCCGCCAATGCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

23.2

Weight (kDa)

4.66

Isoelectric Point (pI)

46.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002264)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04712 FvH4_2g40191 FvH4_2g40203 FvH4_2g40210 FvH4_2g40220 FvH4_3g18081
rosa_chinensis	RchiOBHm_Chr1g0378061 RchiOBHm_Chr5g0003061 RchiOBHm_Chr5g0030501
rosa_laevigata	RLG00000031096 RLG00000031106 RLG00000031109
rosa_multiflora	Rmu_sc0000280.1_g000001 Rmu_sc0015917.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019880 Rroxscaffold_1G00019910 Rroxscaffold_1G00049800 Rroxscaffold_1G00072540 Rroxscaffold_1G00073090
rosa_rugosa	Rorug04G0396300 Rorug04G0396400 Rorug04G0396500 Rorug04G0396600 Rorug04G0401800 Rorug05G0117400 Rorug05G0334100 Rorug05G0334100
rosa_samantha	Rh5AG028100 Rh5AG028200 Rh5AG210200 Rh5AG396800 Rh5AG396900 Rh5BG028300 Rh5BG209400 Rh5BG408900 Rh5BG409100 Rh5CG027500 Rh5CG030600 Rh5CG030700 Rh5CG433600 Rh5CG433800
rosa_wichuraiana	Rw5G002290 Rw5G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	380
AccB1I	GGYRCC	1 cut(s)	43
AccIII	TCCGGA	1 cut(s)	589
AciI	CCGC	2 cut(s)	144, 609
AclWI	GGATC	1 cut(s)	197
AcsI	RAATTY	1 cut(s)	374
AfiI	CCNNNNNNNGG	1 cut(s)	514
AflIII	ACRYGT	1 cut(s)	303
AjiI	CACGTC	1 cut(s)	354
AjnI	CCWGG	2 cut(s)	146, 177
AluBI	AGCT	1 cut(s)	50
AluI	AGCT	1 cut(s)	50
Alw21I	GWGCWC	2 cut(s)	36, 492
Alw26I	GTCTC	2 cut(s)	344, 410
Alw44I	GTGCAC	1 cut(s)	32
AlwI	GGATC	1 cut(s)	197
AlwNI	CAGNNNCTG	1 cut(s)	178
Aor13HI	TCCGGA	1 cut(s)	589
ApaLI	GTGCAC	1 cut(s)	32
ApeKI	GCWGC	3 cut(s)	24, 251, 617
ApoI	RAATTY	1 cut(s)	374
AspLEI	GCGC	1 cut(s)	608
AspS9I	GGNCC	1 cut(s)	175
AsuHPI	GGTGA	3 cut(s)	497, 542, 593
AvaII	GGWCC	1 cut(s)	175
AxyI	CCTNAGG	1 cut(s)	39
BaeGI	GKGCMC	3 cut(s)	36, 359, 509
BanI	GGYRCC	1 cut(s)	43
BauI	CACGAG	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	444
Bbv12I	GWGCWC	2 cut(s)	36, 492
BbvI	GCAGC	3 cut(s)	36, 238, 604
BciT130I	CCWGG	2 cut(s)	148, 179
BclI	TGATCA	1 cut(s)	337
BcoDI	GTCTC	2 cut(s)	344, 410
BfaI	CTAG	1 cut(s)	110
BfoI	RGCGCY	1 cut(s)	609
BglII	AGATCT	1 cut(s)	365
BisI	GCNGC	5 cut(s)	25, 144, 252, 609, 618
BlsI	GCNGC	5 cut(s)	26, 145, 253, 610, 619
Bme1390I	CCNGG	2 cut(s)	148, 179
Bme18I	GGWCC	1 cut(s)	175
BmgBI	CACGTC	1 cut(s)	354
BmgT120I	GGNCC	1 cut(s)	175
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	2 cut(s)	148, 179
BmrI	ACTGGG	1 cut(s)	550
BmuI	ACTGGG	1 cut(s)	550
BpiI	GAAGAC	1 cut(s)	444
BsaAI	YACGTR	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	103
BsaWI	WCCGGW	2 cut(s)	296, 589
Bsc4I	CCNNNNNNNGG	1 cut(s)	514
Bse1I	ACTGG	2 cut(s)	169, 545
Bse21I	CCTNAGG	1 cut(s)	39
BseAI	TCCGGA	1 cut(s)	589
BseBI	CCWGG	2 cut(s)	148, 179
BseDI	CCNNGG	1 cut(s)	103
BseGI	GGATG	2 cut(s)	562, 577
BseLI	CCNNNNNNNGG	1 cut(s)	514
BseMII	CTCAG	1 cut(s)	339
BseNI	ACTGG	2 cut(s)	169, 545
BseRI	GAGGAG	1 cut(s)	141
BseSI	GKGCMC	3 cut(s)	36, 359, 509
BseXI	GCAGC	3 cut(s)	36, 238, 604
BshNI	GGYRCC	1 cut(s)	43
BsiHKAI	GWGCWC	2 cut(s)	36, 492
BsiSI	CCGG	2 cut(s)	297, 590
BslI	CCNNNNNNNGG	1 cut(s)	514
BsmAI	GTCTC	2 cut(s)	344, 410
BsmBI	CGTCTC	1 cut(s)	344
Bsp1286I	GDGCHC	4 cut(s)	36, 359, 492, 509
Bsp13I	TCCGGA	1 cut(s)	589
Bsp143I	GATC	3 cut(s)	202, 337, 365
BspACI	CCGC	2 cut(s)	144, 609
BspCNI	CTCAG	1 cut(s)	340
BspEI	TCCGGA	1 cut(s)	589
BspLI	GGNNCC	1 cut(s)	45
BspPI	GGATC	1 cut(s)	197
BspT107I	GGYRCC	1 cut(s)	43
BsrI	ACTGG	2 cut(s)	169, 545
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	3 cut(s)	202, 337, 365
BssSI	CACGAG	1 cut(s)	29
BssT1I	CCWWGG	1 cut(s)	103
Bst2BI	CACGAG	1 cut(s)	29
Bst2UI	CCWGG	2 cut(s)	148, 179
Bst4CI	ACNGT	2 cut(s)	385, 404
BstBAI	YACGTR	1 cut(s)	306
BstDEI	CTNAG	2 cut(s)	39, 348
BstF5I	GGATG	2 cut(s)	562, 577
BstH2I	RGCGCY	1 cut(s)	609
BstHHI	GCGC	1 cut(s)	608
BstKTI	GATC	3 cut(s)	205, 340, 368
BstMAI	GTCTC	2 cut(s)	344, 410
BstMBI	GATC	3 cut(s)	202, 337, 365
BstMWI	GCNNNNNNNGC	2 cut(s)	614, 617
BstNI	CCWGG	2 cut(s)	148, 179
BstSCI	CCNGG	2 cut(s)	146, 177
BstSLI	GKGCMC	3 cut(s)	36, 359, 509
BstV1I	GCAGC	3 cut(s)	36, 238, 604
BstV2I	GAAGAC	1 cut(s)	444
BstX2I	RGATCY	1 cut(s)	365
BstYI	RGATCY	1 cut(s)	365
Bsu36I	CCTNAGG	1 cut(s)	39
BtgZI	GCGATG	1 cut(s)	339
BtrI	CACGTC	1 cut(s)	354
BtsCI	GGATG	2 cut(s)	562, 577
BtsIMutI	CAGTG	1 cut(s)	345
CaiI	CAGNNNCTG	1 cut(s)	178
CfoI	GCGC	1 cut(s)	608
Cfr13I	GGNCC	1 cut(s)	175
CviAII	CATG	4 cut(s)	411, 514, 526, 553
CviJI	RGCY	6 cut(s)	27, 50, 143, 159, 293, 425
CviKI_1	RGCY	6 cut(s)	27, 50, 143, 159, 293, 425
DdeI	CTNAG	2 cut(s)	39, 348
DpnI	GATC	3 cut(s)	204, 339, 367
DpnII	GATC	3 cut(s)	202, 337, 365
Eco130I	CCWWGG	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	175
Eco81I	CCTNAGG	1 cut(s)	39
EcoO109I	RGGNCCY	1 cut(s)	175
EcoRII	CCWGG	2 cut(s)	146, 177
EcoT14I	CCWWGG	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	103
Esp3I	CGTCTC	1 cut(s)	344
FaeI	CATG	4 cut(s)	414, 517, 529, 556
FatI	CATG	4 cut(s)	410, 513, 525, 552
FbaI	TGATCA	1 cut(s)	337
Fnu4HI	GCNGC	5 cut(s)	25, 144, 252, 609, 618
FokI	GGATG	2 cut(s)	569, 584
Fsp4HI	GCNGC	5 cut(s)	25, 144, 252, 609, 618
FspBI	CTAG	1 cut(s)	110
GlaI	GCGC	1 cut(s)	607
GluI	GCNGC	5 cut(s)	25, 144, 252, 609, 618
HaeII	RGCGCY	1 cut(s)	609
HapII	CCGG	2 cut(s)	297, 590
HhaI	GCGC	1 cut(s)	608
Hin1II	CATG	4 cut(s)	414, 517, 529, 556
Hin6I	GCGC	1 cut(s)	606
HinP1I	GCGC	1 cut(s)	606
HinfI	GANTC	4 cut(s)	137, 239, 257, 518
HpaII	CCGG	2 cut(s)	297, 590
HphI	GGTGA	3 cut(s)	497, 542, 593
Hpy166II	GTNNAC	2 cut(s)	34, 243
Hpy188I	TCNGA	3 cut(s)	125, 523, 550
Hpy188III	TCNNGA	3 cut(s)	10, 369, 590
Hpy8I	GTNNAC	2 cut(s)	34, 243
HpyAV	CCTTC	1 cut(s)	571
HpyCH4III	ACNGT	2 cut(s)	385, 404
HpyCH4IV	ACGT	2 cut(s)	305, 353
HpyCH4V	TGCA	6 cut(s)	24, 34, 96, 273, 390, 620
HpyF10VI	GCNNNNNNNGC	2 cut(s)	614, 617
HpyF3I	CTNAG	2 cut(s)	39, 348
HpySE526I	ACGT	2 cut(s)	305, 353
Hsp92II	CATG	4 cut(s)	414, 517, 529, 556
HspAI	GCGC	1 cut(s)	606
Kpn2I	TCCGGA	1 cut(s)	589
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	3 cut(s)	202, 337, 365
Lsp1109I	GCAGC	3 cut(s)	36, 238, 604
MaeI	CTAG	1 cut(s)	110
MaeII	ACGT	2 cut(s)	305, 353
MaeIII	GTNAC	3 cut(s)	299, 398, 530
MalI	GATC	3 cut(s)	204, 339, 367
MboI	GATC	3 cut(s)	202, 337, 365
MboII	GAAGA	4 cut(s)	97, 293, 449, 461
MflI	RGATCY	1 cut(s)	365
MhlI	GDGCHC	4 cut(s)	36, 359, 492, 509
MluCI	AATT	4 cut(s)	97, 218, 331, 374
MlyI	GAGTC	1 cut(s)	248
MmeI	TCCRAC	2 cut(s)	233, 546
MnlI	CCTC	8 cut(s)	38, 75, 119, 216, 217, 242, 415, 529
MroI	TCCGGA	1 cut(s)	589
MspI	CCGG	2 cut(s)	297, 590
MspR9I	CCNGG	2 cut(s)	148, 179
MvaI	CCWGG	2 cut(s)	148, 179
MwoI	GCNNNNNNNGC	2 cut(s)	614, 617
NdeII	GATC	3 cut(s)	202, 337, 365
NlaIII	CATG	4 cut(s)	414, 517, 529, 556
NlaIV	GGNNCC	1 cut(s)	45
NmuCI	GTSAC	2 cut(s)	398, 530
PfeI	GAWTC	3 cut(s)	137, 257, 518
PkrI	GCNGC	5 cut(s)	26, 145, 253, 610, 619
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
Ppu21I	YACGTR	1 cut(s)	306
PpuMI	RGGWCCY	1 cut(s)	175
PsiI	TTATAA	1 cut(s)	380
Psp5II	RGGWCCY	1 cut(s)	175
Psp6I	CCWGG	2 cut(s)	146, 177
PspGI	CCWGG	2 cut(s)	146, 177
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	1 cut(s)	175
PspPPI	RGGWCCY	1 cut(s)	175
PstNI	CAGNNNCTG	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	365
SatI	GCNGC	5 cut(s)	25, 144, 252, 609, 618
Sau3AI	GATC	3 cut(s)	202, 337, 365
Sau96I	GGNCC	1 cut(s)	175
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	2 cut(s)	148, 179
SduI	GDGCHC	4 cut(s)	36, 359, 492, 509
SetI	ASST	6 cut(s)	52, 180, 271, 279, 308, 356
SinI	GGWCC	1 cut(s)	175
Sse9I	AATT	4 cut(s)	97, 218, 331, 374
SsiI	CCGC	2 cut(s)	144, 609
SspMI	CTAG	1 cut(s)	110
StyD4I	CCNGG	2 cut(s)	146, 177
StyI	CCWWGG	1 cut(s)	103
TaaI	ACNGT	2 cut(s)	385, 404
TaiI	ACGT	2 cut(s)	308, 356
TaqI	TCGA	2 cut(s)	59, 237
TasI	AATT	4 cut(s)	97, 218, 331, 374
TauI	GCSGC	2 cut(s)	146, 611
TfiI	GAWTC	3 cut(s)	137, 257, 518
TscAI	CASTG	1 cut(s)	352
TseFI	GTSAC	2 cut(s)	398, 530
TseI	GCWGC	3 cut(s)	24, 251, 617
Tsp45I	GTSAC	2 cut(s)	398, 530
TspDTI	ATGAA	3 cut(s)	104, 206, 462
TspRI	CASTG	1 cut(s)	352
VneI	GTGCAC	1 cut(s)	32
VpaK11BI	GGWCC	1 cut(s)	175
XapI	RAATTY	1 cut(s)	374
XspI	CTAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.