Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002264

Physical Location & Seq

Genomic Coordinates Reverse (-)

24233650 .. 24234840

Gene Structure 1191 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG209400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTTAACGCTCCAAGCCCTCAGCGATAACCTAACTCCCCAACTTTCTCTCTTTGACACAGACACAGCCGGAGATCCTGGACCAGAAGAGCCGGAGAAGATCCTTGAGCGCCCTCAGTCTCCTGTGGAACCGCAAACAGGCAGCGACGAAGTAAAACCAAAACTTGTGTTTTGTTTGATCTGTAAAGGGAATGGCGACCACGAAACTATAAATTGTCCGGACAAATCAGAGGGATATGTAACCCTTTGTAGGATTTGTGATGACGGTCCATGTGAAAATGAGGATGATCCAGACCACATGGAAGAACATTATGAATATCTCATGCGTTGTAACTGTTGTGGAGCTATCGGTAAACACTGGGAAGATACCTGCTCTATGAATTCCAGCGACAACGATTGTGACTTTGATCCTCCTTCTTGTCTCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

15.79

Weight (kDa)

4.09

Isoelectric Point (pI)

45.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002264)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04712 FvH4_2g40191 FvH4_2g40203 FvH4_2g40210 FvH4_2g40220 FvH4_3g18081
rosa_chinensis	RchiOBHm_Chr1g0378061 RchiOBHm_Chr5g0003061 RchiOBHm_Chr5g0030501
rosa_laevigata	RLG00000031096 RLG00000031106 RLG00000031109
rosa_multiflora	Rmu_sc0000280.1_g000001 Rmu_sc0015917.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019880 Rroxscaffold_1G00019910 Rroxscaffold_1G00049800 Rroxscaffold_1G00072540 Rroxscaffold_1G00073090
rosa_rugosa	Rorug04G0396300 Rorug04G0396400 Rorug04G0396500 Rorug04G0396600 Rorug04G0401800 Rorug05G0117400 Rorug05G0334100 Rorug05G0334100
rosa_samantha	Rh5AG028100 Rh5AG028200 Rh5AG210200 Rh5AG396800 Rh5AG396900 Rh5BG028300 Rh5BG209400 Rh5BG408900 Rh5BG409100 Rh5CG027500 Rh5CG030600 Rh5CG030700 Rh5CG433600 Rh5CG433800
rosa_wichuraiana	Rw5G002290 Rw5G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	377
AccIII	TCCGGA	1 cut(s)	217
AciI	CCGC	1 cut(s)	131
AclWI	GGATC	4 cut(s)	68, 94, 281, 401
AcsI	RAATTY	1 cut(s)	379
AfiI	CCNNNNNNNGG	2 cut(s)	137, 249
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	1 cut(s)	344
AluI	AGCT	1 cut(s)	344
Alw26I	GTCTC	2 cut(s)	123, 425
AlwI	GGATC	4 cut(s)	68, 94, 281, 401
Aor13HI	TCCGGA	1 cut(s)	217
ApeKI	GCWGC	1 cut(s)	141
ApoI	RAATTY	1 cut(s)	379
AspLEI	GCGC	1 cut(s)	111
AspS9I	GGNCC	2 cut(s)	80, 266
AvaII	GGWCC	2 cut(s)	80, 266
BbvCI	CCTCAGC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	153
BciT130I	CCWGG	1 cut(s)	78
BcoDI	GTCTC	2 cut(s)	123, 425
BfoI	RGCGCY	1 cut(s)	112
BfuAI	ACCTGC	1 cut(s)	377
BisI	GCNGC	1 cut(s)	142
BlsI	GCNGC	1 cut(s)	143
Bme1390I	CCNGG	1 cut(s)	78
Bme18I	GGWCC	2 cut(s)	80, 266
BmgT120I	GGNCC	2 cut(s)	80, 266
BmiI	GGNNCC	1 cut(s)	129
BmrFI	CCNGG	1 cut(s)	78
BmrI	ACTGGG	1 cut(s)	367
BmuI	ACTGGG	1 cut(s)	367
Bpu10I	CCTNAGC	1 cut(s)	20
BpuEI	CTTGAG	1 cut(s)	125
BsaWI	WCCGGW	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 249
Bse1I	ACTGG	1 cut(s)	362
BseAI	TCCGGA	1 cut(s)	217
BseBI	CCWGG	1 cut(s)	78
BseGI	GGATG	1 cut(s)	289
BseLI	CCNNNNNNNGG	2 cut(s)	137, 249
BseMII	CTCAG	2 cut(s)	34, 128
BseNI	ACTGG	1 cut(s)	362
BseXI	GCAGC	1 cut(s)	153
BsiSI	CCGG	3 cut(s)	69, 92, 218
BslI	CCNNNNNNNGG	2 cut(s)	137, 249
BsmAI	GTCTC	2 cut(s)	123, 425
Bsp13I	TCCGGA	1 cut(s)	217
Bsp143I	GATC	5 cut(s)	73, 99, 177, 286, 406
BspACI	CCGC	1 cut(s)	131
BspCNI	CTCAG	2 cut(s)	33, 127
BspEI	TCCGGA	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	129
BspMI	ACCTGC	1 cut(s)	377
BspPI	GGATC	4 cut(s)	68, 94, 281, 401
BspQI	GCTCTTC	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	362
BssMI	GATC	5 cut(s)	73, 99, 177, 286, 406
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	2 cut(s)	266, 335
Bst6I	CTCTTC	1 cut(s)	81
BstDEI	CTNAG	2 cut(s)	20, 114
BstF5I	GGATG	1 cut(s)	289
BstH2I	RGCGCY	1 cut(s)	112
BstHHI	GCGC	1 cut(s)	111
BstKTI	GATC	5 cut(s)	76, 102, 180, 289, 409
BstMAI	GTCTC	2 cut(s)	123, 425
BstMBI	GATC	5 cut(s)	73, 99, 177, 286, 406
BstNI	CCWGG	1 cut(s)	78
BstSCI	CCNGG	1 cut(s)	76
BstV1I	GCAGC	1 cut(s)	153
BstX2I	RGATCY	2 cut(s)	73, 99
BstYI	RGATCY	2 cut(s)	73, 99
BtsCI	GGATG	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	355
BveI	ACCTGC	1 cut(s)	377
CfoI	GCGC	1 cut(s)	111
Cfr13I	GGNCC	2 cut(s)	80, 266
CviAII	CATG	3 cut(s)	270, 298, 322
CviJI	RGCY	4 cut(s)	17, 68, 91, 344
CviKI_1	RGCY	4 cut(s)	17, 68, 91, 344
DdeI	CTNAG	2 cut(s)	20, 114
DpnI	GATC	5 cut(s)	75, 101, 179, 288, 408
DpnII	GATC	5 cut(s)	73, 99, 177, 286, 406
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
Eco47I	GGWCC	2 cut(s)	80, 266
EcoRI	GAATTC	1 cut(s)	379
EcoRII	CCWGG	1 cut(s)	76
FaeI	CATG	3 cut(s)	273, 301, 325
FaiI	YATR	7 cut(s)	209, 237, 271, 299, 312, 323, 377
FatI	CATG	3 cut(s)	269, 297, 321
Fnu4HI	GCNGC	1 cut(s)	142
FokI	GGATG	1 cut(s)	296
Fsp4HI	GCNGC	1 cut(s)	142
GlaI	GCGC	1 cut(s)	110
GluI	GCNGC	1 cut(s)	142
HaeII	RGCGCY	1 cut(s)	112
HapII	CCGG	3 cut(s)	69, 92, 218
HhaI	GCGC	1 cut(s)	111
Hin1II	CATG	3 cut(s)	273, 301, 325
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HpaI	GTTAAC	1 cut(s)	6
HpaII	CCGG	3 cut(s)	69, 92, 218
Hpy166II	GTNNAC	2 cut(s)	6, 353
Hpy188I	TCNGA	1 cut(s)	229
Hpy188III	TCNNGA	2 cut(s)	218, 290
Hpy8I	GTNNAC	2 cut(s)	6, 353
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	1 cut(s)	423
HpyCH4III	ACNGT	2 cut(s)	266, 335
HpyF3I	CTNAG	2 cut(s)	20, 114
Hsp92II	CATG	3 cut(s)	273, 301, 325
HspAI	GCGC	1 cut(s)	109
Kpn2I	TCCGGA	1 cut(s)	217
KspAI	GTTAAC	1 cut(s)	6
Kzo9I	GATC	5 cut(s)	73, 99, 177, 286, 406
LguI	GCTCTTC	1 cut(s)	81
LmnI	GCTCC	2 cut(s)	15, 341
Lsp1109I	GCAGC	1 cut(s)	153
MaeIII	GTNAC	3 cut(s)	238, 329, 398
MalI	GATC	5 cut(s)	75, 101, 179, 288, 408
MboI	GATC	5 cut(s)	73, 99, 177, 286, 406
MboII	GAAGA	4 cut(s)	98, 109, 314, 374
MflI	RGATCY	2 cut(s)	73, 99
MluCI	AATT	2 cut(s)	211, 379
MnlI	CCTC	5 cut(s)	29, 123, 223, 274, 420
MroI	TCCGGA	1 cut(s)	217
MseI	TTAA	1 cut(s)	5
MspI	CCGG	3 cut(s)	69, 92, 218
MspR9I	CCNGG	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	78
NdeII	GATC	5 cut(s)	73, 99, 177, 286, 406
NlaIII	CATG	3 cut(s)	273, 301, 325
NlaIV	GGNNCC	1 cut(s)	129
NmuCI	GTSAC	1 cut(s)	398
PciSI	GCTCTTC	1 cut(s)	81
PfoI	TCCNGGA	1 cut(s)	76
PkrI	GCNGC	1 cut(s)	143
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	129
PspPI	GGNCC	2 cut(s)	80, 266
PsuI	RGATCY	2 cut(s)	73, 99
SapI	GCTCTTC	1 cut(s)	81
SaqAI	TTAA	1 cut(s)	5
SatI	GCNGC	1 cut(s)	142
Sau3AI	GATC	5 cut(s)	73, 99, 177, 286, 406
Sau96I	GGNCC	2 cut(s)	80, 266
ScrFI	CCNGG	1 cut(s)	78
SetI	ASST	3 cut(s)	33, 346, 371
SinI	GGWCC	2 cut(s)	80, 266
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	2 cut(s)	211, 379
SsiI	CCGC	1 cut(s)	131
StyD4I	CCNGG	1 cut(s)	76
TaaI	ACNGT	2 cut(s)	266, 335
TasI	AATT	2 cut(s)	211, 379
Tru1I	TTAA	1 cut(s)	5
Tru9I	TTAA	1 cut(s)	5
TscAI	CASTG	1 cut(s)	362
TseFI	GTSAC	1 cut(s)	398
TseI	GCWGC	1 cut(s)	141
Tsp45I	GTSAC	1 cut(s)	398
TspDTI	ATGAA	2 cut(s)	327, 392
TspRI	CASTG	1 cut(s)	362
VpaK11BI	GGWCC	2 cut(s)	80, 266
XapI	RAATTY	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.