Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002264

Physical Location & Seq

Genomic Coordinates Forward (+)

24329275 .. 24330167

Gene Structure 893 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00019910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGACTATCTGGAAAACTATATGCAACCTCGTGCACTCGAGGGCACCAGCTATGCTTTCGAATTTTGGTTCAGGGTTGGTGAGGAAGATTATCTGCAATTTCCTTGCCCTGGTTCATCTGTTTAGAGGAAATAAAGATGCAGCCGCCATGAGTATTAGCCCAACTGGACAGCAGGACCTGGAACAACTGGTGAAACTCTGTGATCCACCAACAACAGAATTAGAGGAAATCCTCATCGAGTCGACTAACGCTGCTGGTTGCAAGGTAGAAGAACCAAAGGCTTCCGATTACACGTATTATTGTAGGATTTGCGATGAGAATTGTGATCACAGCACTGAGACGTGCCCTGACAGATCTGGGAAATTTATAACAGTTTGTAGGGTTTGTGACTGTCTCCCATGTAAAAATGAGGCTGACCACAAGGAAGACCATTATGAACGGTTCTTTTTTTGTCATCTTTGTAGTACGATTGGTCAGCACTTGACTGAAATGTGCCCTGACATGGATTCCGACATGGGTGACGAGGACTGGGGTTCTGACATGGATGACGAGAACAGGGTTGAGAAGGGTGATTTTCCAGAGAATACACAGAGCGCCGCTAATGCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

203

Amino Acids

22.74

Weight (kDa)

4.6

Isoelectric Point (pI)

45.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002264)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04712 FvH4_2g40191 FvH4_2g40203 FvH4_2g40210 FvH4_2g40220 FvH4_3g18081
rosa_chinensis	RchiOBHm_Chr1g0378061 RchiOBHm_Chr5g0003061 RchiOBHm_Chr5g0030501
rosa_laevigata	RLG00000031096 RLG00000031106 RLG00000031109
rosa_multiflora	Rmu_sc0000280.1_g000001 Rmu_sc0015917.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019880 Rroxscaffold_1G00019910 Rroxscaffold_1G00049800 Rroxscaffold_1G00072540 Rroxscaffold_1G00073090
rosa_rugosa	Rorug04G0396300 Rorug04G0396400 Rorug04G0396500 Rorug04G0396600 Rorug04G0401800 Rorug05G0117400 Rorug05G0334100 Rorug05G0334100
rosa_samantha	Rh5AG028100 Rh5AG028200 Rh5AG210200 Rh5AG396800 Rh5AG396900 Rh5BG028300 Rh5BG209400 Rh5BG408900 Rh5BG409100 Rh5CG027500 Rh5CG030600 Rh5CG030700 Rh5CG433600 Rh5CG433800
rosa_wichuraiana	Rw5G002290 Rw5G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	368
AccB1I	GGYRCC	1 cut(s)	43
AccI	GTMKAC	1 cut(s)	242
AciI	CCGC	2 cut(s)	144, 597
AclWI	GGATC	1 cut(s)	197
AcsI	RAATTY	2 cut(s)	61, 362
AfaI	GTAC	1 cut(s)	466
AfiI	CCNNNNNNNGG	2 cut(s)	109, 502
AflIII	ACRYGT	1 cut(s)	291
AjiI	CACGTC	1 cut(s)	342
AjnI	CCWGG	2 cut(s)	108, 177
AluBI	AGCT	1 cut(s)	50
AluI	AGCT	1 cut(s)	50
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	2 cut(s)	332, 398
Alw44I	GTGCAC	1 cut(s)	32
AlwI	GGATC	1 cut(s)	197
AlwNI	CAGNNNCTG	1 cut(s)	178
Ama87I	CYCGRG	1 cut(s)	37
ApaLI	GTGCAC	1 cut(s)	32
ApeKI	GCWGC	3 cut(s)	140, 251, 605
ApoI	RAATTY	2 cut(s)	61, 362
AspLEI	GCGC	1 cut(s)	596
AspS9I	GGNCC	1 cut(s)	175
AsuHPI	GGTGA	4 cut(s)	91, 202, 530, 581
AsuII	TTCGAA	1 cut(s)	59
AvaI	CYCGRG	1 cut(s)	37
AvaII	GGWCC	1 cut(s)	175
BaeGI	GKGCMC	4 cut(s)	36, 46, 347, 497
BanI	GGYRCC	1 cut(s)	43
BauI	CACGAG	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	432
Bbv12I	GWGCWC	1 cut(s)	36
BbvI	GCAGC	3 cut(s)	152, 238, 592
BciT130I	CCWGG	2 cut(s)	110, 179
BclI	TGATCA	1 cut(s)	325
BcoDI	GTCTC	2 cut(s)	332, 398
BfoI	RGCGCY	1 cut(s)	597
BglII	AGATCT	1 cut(s)	353
BisI	GCNGC	5 cut(s)	141, 144, 252, 597, 606
BlsI	GCNGC	5 cut(s)	142, 145, 253, 598, 607
Bme1390I	CCNGG	2 cut(s)	110, 179
Bme18I	GGWCC	1 cut(s)	175
BmeT110I	CYCGRG	1 cut(s)	37
BmgBI	CACGTC	1 cut(s)	342
BmgT120I	GGNCC	1 cut(s)	175
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	2 cut(s)	110, 179
BmrI	ACTGGG	1 cut(s)	538
BmsI	GCATC	1 cut(s)	127
BmuI	ACTGGG	1 cut(s)	538
BpiI	GAAGAC	1 cut(s)	432
Bpu14I	TTCGAA	1 cut(s)	59
BsaAI	YACGTR	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 502
Bse1I	ACTGG	3 cut(s)	169, 192, 533
BseBI	CCWGG	2 cut(s)	110, 179
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	1 cut(s)	550
BseLI	CCNNNNNNNGG	2 cut(s)	109, 502
BseMII	CTCAG	1 cut(s)	327
BseNI	ACTGG	3 cut(s)	169, 192, 533
BseSI	GKGCMC	4 cut(s)	36, 46, 347, 497
BseXI	GCAGC	3 cut(s)	152, 238, 592
BshNI	GGYRCC	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	36
BsiHKCI	CYCGRG	1 cut(s)	37
BslI	CCNNNNNNNGG	2 cut(s)	109, 502
BsmAI	GTCTC	2 cut(s)	332, 398
BsmBI	CGTCTC	1 cut(s)	332
BsoBI	CYCGRG	1 cut(s)	37
Bsp119I	TTCGAA	1 cut(s)	59
Bsp1286I	GDGCHC	4 cut(s)	36, 46, 347, 497
Bsp143I	GATC	3 cut(s)	202, 325, 353
BspACI	CCGC	2 cut(s)	144, 597
BspCNI	CTCAG	1 cut(s)	328
BspLI	GGNNCC	1 cut(s)	45
BspPI	GGATC	1 cut(s)	197
BspT104I	TTCGAA	1 cut(s)	59
BspT107I	GGYRCC	1 cut(s)	43
BsrI	ACTGG	3 cut(s)	169, 192, 533
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	3 cut(s)	202, 325, 353
BssSI	CACGAG	1 cut(s)	29
Bst2BI	CACGAG	1 cut(s)	29
Bst2UI	CCWGG	2 cut(s)	110, 179
Bst4CI	ACNGT	3 cut(s)	373, 392, 441
BstBAI	YACGTR	1 cut(s)	294
BstBI	TTCGAA	1 cut(s)	59
BstDEI	CTNAG	1 cut(s)	336
BstF5I	GGATG	1 cut(s)	550
BstH2I	RGCGCY	1 cut(s)	597
BstHHI	GCGC	1 cut(s)	596
BstKTI	GATC	3 cut(s)	205, 328, 356
BstMAI	GTCTC	2 cut(s)	332, 398
BstMBI	GATC	3 cut(s)	202, 325, 353
BstMWI	GCNNNNNNNGC	2 cut(s)	602, 605
BstNI	CCWGG	2 cut(s)	110, 179
BstSCI	CCNGG	2 cut(s)	108, 177
BstSLI	GKGCMC	4 cut(s)	36, 46, 347, 497
BstV1I	GCAGC	3 cut(s)	152, 238, 592
BstV2I	GAAGAC	1 cut(s)	432
BstX2I	RGATCY	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	353
BtgZI	GCGATG	1 cut(s)	327
BtrI	CACGTC	1 cut(s)	342
BtsCI	GGATG	1 cut(s)	550
BtsIMutI	CAGTG	1 cut(s)	333
CaiI	CAGNNNCTG	1 cut(s)	178
CfoI	GCGC	1 cut(s)	596
Cfr13I	GGNCC	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	465
CviAII	CATG	5 cut(s)	148, 399, 502, 514, 541
CviJI	RGCY	5 cut(s)	50, 143, 159, 281, 413
CviKI_1	RGCY	5 cut(s)	50, 143, 159, 281, 413
CviQI	GTAC	1 cut(s)	465
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	3 cut(s)	204, 327, 355
DpnII	GATC	3 cut(s)	202, 325, 353
Eco47I	GGWCC	1 cut(s)	175
Eco88I	CYCGRG	1 cut(s)	37
EcoO109I	RGGNCCY	1 cut(s)	175
EcoRII	CCWGG	2 cut(s)	108, 177
Esp3I	CGTCTC	1 cut(s)	332
FaeI	CATG	5 cut(s)	151, 402, 505, 517, 544
FatI	CATG	5 cut(s)	147, 398, 501, 513, 540
FbaI	TGATCA	1 cut(s)	325
FblI	GTMKAC	1 cut(s)	242
Fnu4HI	GCNGC	5 cut(s)	141, 144, 252, 597, 606
FokI	GGATG	1 cut(s)	557
Fsp4HI	GCNGC	5 cut(s)	141, 144, 252, 597, 606
GlaI	GCGC	1 cut(s)	595
GluI	GCNGC	5 cut(s)	141, 144, 252, 597, 606
HaeII	RGCGCY	1 cut(s)	597
HhaI	GCGC	1 cut(s)	596
Hin1II	CATG	5 cut(s)	151, 402, 505, 517, 544
Hin6I	GCGC	1 cut(s)	594
HinP1I	GCGC	1 cut(s)	594
HincII	GTYRAC	1 cut(s)	243
HindII	GTYRAC	1 cut(s)	243
HinfI	GANTC	2 cut(s)	239, 506
HphI	GGTGA	4 cut(s)	91, 202, 530, 581
Hpy166II	GTNNAC	2 cut(s)	34, 243
Hpy188I	TCNGA	3 cut(s)	286, 511, 538
Hpy188III	TCNNGA	2 cut(s)	10, 578
Hpy8I	GTNNAC	2 cut(s)	34, 243
HpyAV	CCTTC	1 cut(s)	559
HpyCH4III	ACNGT	3 cut(s)	373, 392, 441
HpyCH4IV	ACGT	2 cut(s)	293, 341
HpyCH4V	TGCA	6 cut(s)	24, 34, 96, 140, 261, 608
HpyF10VI	GCNNNNNNNGC	2 cut(s)	602, 605
HpyF3I	CTNAG	1 cut(s)	336
HpySE526I	ACGT	2 cut(s)	293, 341
Hsp92II	CATG	5 cut(s)	151, 402, 505, 517, 544
HspAI	GCGC	1 cut(s)	594
Ksp22I	TGATCA	1 cut(s)	325
Kzo9I	GATC	3 cut(s)	202, 325, 353
Lsp1109I	GCAGC	3 cut(s)	152, 238, 592
LweI	GCATC	1 cut(s)	127
MaeII	ACGT	2 cut(s)	293, 341
MaeIII	GTNAC	2 cut(s)	386, 518
MalI	GATC	3 cut(s)	204, 327, 355
MboI	GATC	3 cut(s)	202, 325, 353
MboII	GAAGA	3 cut(s)	97, 281, 437
MflI	RGATCY	1 cut(s)	353
MhlI	GDGCHC	4 cut(s)	36, 46, 347, 497
MluCI	AATT	5 cut(s)	61, 97, 218, 319, 362
MlyI	GAGTC	1 cut(s)	248
MmeI	TCCRAC	1 cut(s)	534
MnlI	CCTC	8 cut(s)	33, 38, 75, 119, 217, 242, 403, 517
MspR9I	CCNGG	2 cut(s)	110, 179
MvaI	CCWGG	2 cut(s)	110, 179
MwoI	GCNNNNNNNGC	2 cut(s)	602, 605
NdeII	GATC	3 cut(s)	202, 325, 353
NlaIII	CATG	5 cut(s)	151, 402, 505, 517, 544
NlaIV	GGNNCC	1 cut(s)	45
NmuCI	GTSAC	2 cut(s)	386, 518
NspV	TTCGAA	1 cut(s)	59
PaeR7I	CTCGAG	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	506
PkrI	GCNGC	5 cut(s)	142, 145, 253, 598, 607
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
Ppu21I	YACGTR	1 cut(s)	294
PpuMI	RGGWCCY	1 cut(s)	175
PsiI	TTATAA	1 cut(s)	368
Psp5II	RGGWCCY	1 cut(s)	175
Psp6I	CCWGG	2 cut(s)	108, 177
PspGI	CCWGG	2 cut(s)	108, 177
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	1 cut(s)	175
PspPPI	RGGWCCY	1 cut(s)	175
PspXI	VCTCGAGB	1 cut(s)	37
PstNI	CAGNNNCTG	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	353
RsaI	GTAC	1 cut(s)	466
RsaNI	GTAC	1 cut(s)	465
SalI	GTCGAC	1 cut(s)	241
SatI	GCNGC	5 cut(s)	141, 144, 252, 597, 606
Sau3AI	GATC	3 cut(s)	202, 325, 353
Sau96I	GGNCC	1 cut(s)	175
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	2 cut(s)	110, 179
SduI	GDGCHC	4 cut(s)	36, 46, 347, 497
SetI	ASST	6 cut(s)	30, 52, 180, 267, 296, 344
SfaNI	GCATC	1 cut(s)	127
Sfr274I	CTCGAG	1 cut(s)	37
SfuI	TTCGAA	1 cut(s)	59
SinI	GGWCC	1 cut(s)	175
SlaI	CTCGAG	1 cut(s)	37
SmlI	CTYRAG	1 cut(s)	37
SmoI	CTYRAG	1 cut(s)	37
Sse9I	AATT	5 cut(s)	61, 97, 218, 319, 362
SsiI	CCGC	2 cut(s)	144, 597
StyD4I	CCNGG	2 cut(s)	108, 177
TaaI	ACNGT	3 cut(s)	373, 392, 441
TaiI	ACGT	2 cut(s)	296, 344
TaqI	TCGA	4 cut(s)	38, 59, 237, 242
TasI	AATT	5 cut(s)	61, 97, 218, 319, 362
TauI	GCSGC	2 cut(s)	146, 599
TfiI	GAWTC	1 cut(s)	506
TscAI	CASTG	1 cut(s)	340
TseFI	GTSAC	2 cut(s)	386, 518
TseI	GCWGC	3 cut(s)	140, 251, 605
Tsp45I	GTSAC	2 cut(s)	386, 518
TspDTI	ATGAA	2 cut(s)	104, 450
TspRI	CASTG	1 cut(s)	340
VneI	GTGCAC	1 cut(s)	32
VpaK11BI	GGWCC	1 cut(s)	175
XapI	RAATTY	2 cut(s)	61, 362
XhoI	CTCGAG	1 cut(s)	37
XmiI	GTMKAC	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.