Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002264

Physical Location & Seq

Genomic Coordinates Forward (+)

1998342 .. 2007832

Gene Structure 9491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031096

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGAAGTGCAAACAGGTAGCAAGGTAGAAGAACGAGACCCTTCTGATGACAGGCATTGTAGGATTTGCGATACATGTGGTGATCATAGTACTGAAACGTGCCCGGAAAGATCCAAGGCATATGTAGTGCTTTGTGGGATTTGTGATGATGACCCATGCCAAAATGAGGCTGACCACAAGGAAGAACATTACGAAGAACTCCTTTTTTGCTATATTTGTAACAAGGTTGGTGAGCACTGGACTGAAAATTGCCCTGACAACGATTGCGACTTTGATCCTCCCAATGGCTGGGATCTTACAGAGAATAAACGGATAGATTTGTTCCCTCTGGATGATCCTGAACTTCACAAAGGGGAAGCTATTTCTCCAGCACTTTTTGCTGCAATTGAAGAATCAAGATTTGCTCTCATTGTTCTCTCACAAAATTATGCATCGTCAACATGGTGCTTGGATGAATTTGTAAGAATTCTTGAATGCATGAAAGCAAGAGAAACGGTGCTGCCAATTTTCTATGATGTTGATCCTTCTGATGTACGAAAGCAAACAGGGAATTTTGGAGAAGCCTTTGCTAATCATGAAGAAAGGTTTAGGGATGACAAAGAGAAAGTGCGAAGGTGGAGATATGCTTTAACTGAAGTGGCAACTTTCCATGGGTGGAATTCAAAGGAATGGCTGGTTGGTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 NB-ARC TIR

Protein Analysis

229

Amino Acids

26.43

Weight (kDa)

4.58

Isoelectric Point (pI)

53.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR_2	PF13676	97 - 176	4.4e-10	TIR domain
TIR	PF01582	101 - 224	3.1e-38	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002264)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04712 FvH4_2g40191 FvH4_2g40203 FvH4_2g40210 FvH4_2g40220 FvH4_3g18081
rosa_chinensis	RchiOBHm_Chr1g0378061 RchiOBHm_Chr5g0003061 RchiOBHm_Chr5g0030501
rosa_laevigata	RLG00000031096 RLG00000031106 RLG00000031109
rosa_multiflora	Rmu_sc0000280.1_g000001 Rmu_sc0015917.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019880 Rroxscaffold_1G00019910 Rroxscaffold_1G00049800 Rroxscaffold_1G00072540 Rroxscaffold_1G00073090
rosa_rugosa	Rorug04G0396300 Rorug04G0396400 Rorug04G0396500 Rorug04G0396600 Rorug04G0401800 Rorug05G0117400 Rorug05G0334100 Rorug05G0334100
rosa_samantha	Rh5AG028100 Rh5AG028200 Rh5AG210200 Rh5AG396800 Rh5AG396900 Rh5BG028300 Rh5BG209400 Rh5BG408900 Rh5BG409100 Rh5CG027500 Rh5CG030600 Rh5CG030700 Rh5CG433600 Rh5CG433800
rosa_wichuraiana	Rw5G002290 Rw5G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	288
AclWI	GGATC	5 cut(s)	105, 269, 300, 329, 515
AcsI	RAATTY	4 cut(s)	455, 465, 550, 658
AcuI	CTGAAG	1 cut(s)	654
AfaI	GTAC	3 cut(s)	91, 534, 682
AfiI	CCNNNNNNNGG	3 cut(s)	166, 284, 288
AflIII	ACRYGT	1 cut(s)	74
AgsI	TTSAA	3 cut(s)	389, 473, 663
AjuI	GAANNNNNNNTTGG	1 cut(s)	660
AluBI	AGCT	1 cut(s)	359
AluI	AGCT	1 cut(s)	359
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	1 cut(s)	30
AlwI	GGATC	5 cut(s)	105, 269, 300, 329, 515
ApeKI	GCWGC	2 cut(s)	380, 499
ApoI	RAATTY	4 cut(s)	455, 465, 550, 658
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	2 cut(s)	92, 242
BaeGI	GKGCMC	1 cut(s)	104
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	2 cut(s)	367, 486
BclI	TGATCA	1 cut(s)	82
BcnI	CCSGG	1 cut(s)	104
BcoDI	GTCTC	1 cut(s)	30
BisI	GCNGC	2 cut(s)	381, 500
BlsI	GCNGC	2 cut(s)	382, 501
BmcAI	AGTACT	1 cut(s)	91
Bme1390I	CCNGG	1 cut(s)	104
BmrFI	CCNGG	1 cut(s)	104
BmsI	GCATC	1 cut(s)	440
BpmI	CTGGAG	1 cut(s)	351
BpuMI	CCSGG	1 cut(s)	104
BsaBI	GATNNNNATC	1 cut(s)	519
BsaI	GGTCTC	1 cut(s)	30
BsaJI	CCNNGG	2 cut(s)	114, 649
Bsc4I	CCNNNNNNNGG	3 cut(s)	166, 284, 288
Bse1I	ACTGG	1 cut(s)	242
Bse8I	GATNNNNATC	1 cut(s)	519
BseDI	CCNNGG	2 cut(s)	114, 649
BseGI	GGATG	3 cut(s)	337, 457, 598
BseJI	GATNNNNATC	1 cut(s)	519
BseLI	CCNNNNNNNGG	3 cut(s)	166, 284, 288
BseNI	ACTGG	1 cut(s)	242
BseSI	GKGCMC	1 cut(s)	104
BseXI	GCAGC	2 cut(s)	367, 486
BseYI	CCCAGC	1 cut(s)	288
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	1 cut(s)	104
BslI	CCNNNNNNNGG	3 cut(s)	166, 284, 288
BsmAI	GTCTC	1 cut(s)	30
BsmI	GAATGC	1 cut(s)	479
Bso31I	GGTCTC	1 cut(s)	30
Bsp1286I	GDGCHC	2 cut(s)	104, 237
Bsp143I	GATC	6 cut(s)	82, 110, 274, 292, 334, 520
Bsp19I	CCATGG	1 cut(s)	649
BspHI	TCATGA	1 cut(s)	574
BspPI	GGATC	5 cut(s)	105, 269, 300, 329, 515
BspTNI	GGTCTC	1 cut(s)	30
BsrI	ACTGG	1 cut(s)	242
BssECI	CCNNGG	2 cut(s)	114, 649
BssMI	GATC	6 cut(s)	82, 110, 274, 292, 334, 520
BssT1I	CCWWGG	2 cut(s)	114, 649
Bst4CI	ACNGT	1 cut(s)	496
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstDEI	CTNAG	1 cut(s)	684
BstDSI	CCRYGG	1 cut(s)	649
BstF5I	GGATG	3 cut(s)	337, 457, 598
BstKTI	GATC	6 cut(s)	85, 113, 277, 295, 337, 523
BstMAI	GTCTC	1 cut(s)	30
BstMBI	GATC	6 cut(s)	82, 110, 274, 292, 334, 520
BstMWI	GCNNNNNNNGC	1 cut(s)	377
BstNSI	RCATGY	1 cut(s)	78
BstSCI	CCNGG	1 cut(s)	102
BstSLI	GKGCMC	1 cut(s)	104
BstV1I	GCAGC	2 cut(s)	367, 486
BstX2I	RGATCY	2 cut(s)	110, 292
BstYI	RGATCY	2 cut(s)	110, 292
BtgI	CCRYGG	1 cut(s)	649
BtsCI	GGATG	3 cut(s)	337, 457, 598
BtsIMutI	CAGTG	1 cut(s)	235
CciI	TCATGA	1 cut(s)	574
Csp6I	GTAC	3 cut(s)	90, 533, 681
CviAII	CATG	6 cut(s)	75, 156, 441, 478, 575, 650
CviJI	RGCY	5 cut(s)	170, 288, 359, 563, 673
CviKI_1	RGCY	5 cut(s)	170, 288, 359, 563, 673
CviQI	GTAC	3 cut(s)	90, 533, 681
DdeI	CTNAG	1 cut(s)	684
DpnI	GATC	6 cut(s)	84, 112, 276, 294, 336, 522
DpnII	GATC	6 cut(s)	82, 110, 274, 292, 334, 520
Eco130I	CCWWGG	2 cut(s)	114, 649
Eco31I	GGTCTC	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	654
EcoRI	GAATTC	2 cut(s)	465, 658
EcoT14I	CCWWGG	2 cut(s)	114, 649
EcoT22I	ATGCAT	2 cut(s)	433, 479
ErhI	CCWWGG	2 cut(s)	114, 649
FaeI	CATG	6 cut(s)	78, 159, 444, 481, 578, 653
FalI	AAGNNNNNCTT	2 cut(s)	186, 218
FatI	CATG	6 cut(s)	74, 155, 440, 477, 574, 649
FauNDI	CATATG	1 cut(s)	121
FbaI	TGATCA	1 cut(s)	82
Fnu4HI	GCNGC	2 cut(s)	381, 500
FokI	GGATG	3 cut(s)	344, 464, 605
Fsp4HI	GCNGC	2 cut(s)	381, 500
GluI	GCNGC	2 cut(s)	381, 500
GsaI	CCCAGC	1 cut(s)	292
GsuI	CTGGAG	1 cut(s)	351
HapII	CCGG	1 cut(s)	104
Hin1II	CATG	6 cut(s)	78, 159, 444, 481, 578, 653
HincII	GTYRAC	1 cut(s)	438
HindII	GTYRAC	1 cut(s)	438
HinfI	GANTC	1 cut(s)	392
HpaII	CCGG	1 cut(s)	104
HphI	GGTGA	2 cut(s)	92, 242
Hpy166II	GTNNAC	1 cut(s)	438
Hpy188I	TCNGA	2 cut(s)	46, 529
Hpy188III	TCNNGA	5 cut(s)	329, 338, 396, 470, 575
Hpy8I	GTNNAC	1 cut(s)	438
HpyAV	CCTTC	3 cut(s)	51, 534, 606
HpyCH4III	ACNGT	1 cut(s)	496
HpyCH4IV	ACGT	1 cut(s)	98
HpyCH4V	TGCA	4 cut(s)	10, 383, 431, 477
HpyF10VI	GCNNNNNNNGC	1 cut(s)	377
HpyF3I	CTNAG	1 cut(s)	684
HpySE526I	ACGT	1 cut(s)	98
Hsp92II	CATG	6 cut(s)	78, 159, 444, 481, 578, 653
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	6 cut(s)	82, 110, 274, 292, 334, 520
Lsp1109I	GCAGC	2 cut(s)	367, 486
LweI	GCATC	1 cut(s)	440
MaeII	ACGT	1 cut(s)	98
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	6 cut(s)	84, 112, 276, 294, 336, 522
MboI	GATC	6 cut(s)	82, 110, 274, 292, 334, 520
MboII	GAAGA	5 cut(s)	41, 194, 206, 401, 590
MfeI	CAATTG	1 cut(s)	384
MflI	RGATCY	2 cut(s)	110, 292
MhlI	GDGCHC	2 cut(s)	104, 237
MluCI	AATT	8 cut(s)	247, 384, 424, 455, 465, 504, 550, 658
MnlI	CCTC	3 cut(s)	160, 288, 336
Mph1103I	ATGCAT	2 cut(s)	433, 479
MseI	TTAA	1 cut(s)	629
MspI	CCGG	1 cut(s)	104
MspR9I	CCNGG	1 cut(s)	104
MunI	CAATTG	1 cut(s)	384
Mva1269I	GAATGC	1 cut(s)	479
MwoI	GCNNNNNNNGC	1 cut(s)	377
NciI	CCSGG	1 cut(s)	104
NcoI	CCATGG	1 cut(s)	649
NdeI	CATATG	1 cut(s)	121
NdeII	GATC	6 cut(s)	82, 110, 274, 292, 334, 520
NlaIII	CATG	6 cut(s)	78, 159, 444, 481, 578, 653
NsiI	ATGCAT	2 cut(s)	433, 479
NspI	RCATGY	1 cut(s)	78
PagI	TCATGA	1 cut(s)	574
PciI	ACATGT	1 cut(s)	74
PctI	GAATGC	1 cut(s)	479
PfeI	GAWTC	1 cut(s)	392
PflMI	CCANNNNNTGG	1 cut(s)	288
PkrI	GCNGC	2 cut(s)	382, 501
PscI	ACATGT	1 cut(s)	74
PspFI	CCCAGC	1 cut(s)	288
PsuI	RGATCY	2 cut(s)	110, 292
RsaI	GTAC	3 cut(s)	91, 534, 682
RsaNI	GTAC	3 cut(s)	90, 533, 681
SaqAI	TTAA	1 cut(s)	629
SatI	GCNGC	2 cut(s)	381, 500
Sau3AI	GATC	6 cut(s)	82, 110, 274, 292, 334, 520
ScaI	AGTACT	1 cut(s)	91
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	2 cut(s)	104, 237
SetI	ASST	7 cut(s)	19, 27, 101, 228, 361, 587, 617
SfaNI	GCATC	1 cut(s)	440
Sse9I	AATT	8 cut(s)	247, 384, 424, 455, 465, 504, 550, 658
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	2 cut(s)	114, 649
TaaI	ACNGT	1 cut(s)	496
TaiI	ACGT	1 cut(s)	101
TasI	AATT	8 cut(s)	247, 384, 424, 455, 465, 504, 550, 658
TatI	WGTACW	1 cut(s)	89
TfiI	GAWTC	1 cut(s)	392
Tru1I	TTAA	1 cut(s)	629
Tru9I	TTAA	1 cut(s)	629
TscAI	CASTG	1 cut(s)	242
TseI	GCWGC	2 cut(s)	380, 499
TspDTI	ATGAA	3 cut(s)	468, 494, 591
TspGWI	ACGGA	1 cut(s)	325
TspRI	CASTG	1 cut(s)	242
Van91I	CCANNNNNTGG	1 cut(s)	288
XapI	RAATTY	4 cut(s)	455, 465, 550, 658
XceI	RCATGY	1 cut(s)	78
ZrmI	AGTACT	1 cut(s)	91
Zsp2I	ATGCAT	2 cut(s)	433, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.