Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002264

Physical Location & Seq

Genomic Coordinates Forward (+)

28698957 .. 28700887

Gene Structure 1931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g40220.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGAGCACTTATCCGATCGATCCGATCCCAACAAGTCGACTGACTGGCTATACTGATTTTCCTTTTCCATCTCCTTTGCTTCGTCAAAATTGTTACAGCAAAGAGTCTCCATGGCACCACCTAGCCTCCAGGGCCCTATTCTGGAACCAGCACCCTCGCCTTGGTCACTTGGTGGCTCGTGCTTCCGCATTCTCTCTGGGACTCGTCTATGGAAGCATTAAGCTCAAGGTCCTCAAGGCTAAGGCTAAATATGGCTGCATCAAAGGCTCATCACTGAAAAGAGCTTCAGTGGATTATGAGAACCTTGCTTTGAAGCTGCAAGGTAGTGATTTTGAATTGAGAAATATGAACTCAGTACTCTATATGATGGTTTATTTGCTGGCCTTGCCTATTGTAACAGCAACTGAGCTCTCTCAAACAGATACAGCCGCCATGATTAGCAGCCCAACTGAACTGGTGAAGCTCTGTGATCCTCCAACAAAAGAAAGAAAGGTGGAAATCCTCATCGAACCCAATAACACGGCTGAATCGCAAACAGGTTGCAAAATAGAAGAACCAAATGCTTCCAAATACACTTACTGTGACATCTGCAAAAATCGTGATCACGACTTGGAGATGTGCCCTAACAGATTTGGGAAAGTTATAACAGTTTGTAGCGTCTGTGGTCATCTCCCATGTAAATATGAGGCTGACGACCACAAGGAACACCATTATGTATGTTTACTATATTGTCATCTTTGTGATGAGATTGGTGATCACTTGACTGAACTGTGCCCGGACATGGAATCCGACTTTGGTGACGAGGACTGGGATTCTAACACAGATGATGATAACTGGGATAATCATGGTATCTGCCGGAGAATACACAGACGGCCGCCGCCGCTGCATAGAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 map00190 map01100 map04714

Pfam Domains

Protein Families

ATP-synt_E

Protein Analysis

299

Amino Acids

33.89

Weight (kDa)

5.95

Isoelectric Point (pI)

44.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002264)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04712 FvH4_2g40191 FvH4_2g40203 FvH4_2g40210 FvH4_2g40220 FvH4_3g18081
rosa_chinensis	RchiOBHm_Chr1g0378061 RchiOBHm_Chr5g0003061 RchiOBHm_Chr5g0030501
rosa_laevigata	RLG00000031096 RLG00000031106 RLG00000031109
rosa_multiflora	Rmu_sc0000280.1_g000001 Rmu_sc0015917.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019880 Rroxscaffold_1G00019910 Rroxscaffold_1G00049800 Rroxscaffold_1G00072540 Rroxscaffold_1G00073090
rosa_rugosa	Rorug04G0396300 Rorug04G0396400 Rorug04G0396500 Rorug04G0396600 Rorug04G0401800 Rorug05G0117400 Rorug05G0334100 Rorug05G0334100
rosa_samantha	Rh5AG028100 Rh5AG028200 Rh5AG210200 Rh5AG396800 Rh5AG396900 Rh5BG028300 Rh5BG209400 Rh5BG408900 Rh5BG409100 Rh5CG027500 Rh5CG030600 Rh5CG030700 Rh5CG433600 Rh5CG433800
rosa_wichuraiana	Rw5G002290 Rw5G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	644
AccB1I	GGYRCC	1 cut(s)	114
AccI	GTMKAC	1 cut(s)	37
AciI	CCGC	5 cut(s)	186, 429, 875, 878, 881
AclWI	GGATC	3 cut(s)	14, 19, 464
AcoI	YGGCCR	1 cut(s)	872
AcuI	CTGAAG	1 cut(s)	270
AdeI	CACNNNGTG	1 cut(s)	172
AfaI	GTAC	1 cut(s)	357
AfiI	CCNNNNNNNGG	3 cut(s)	141, 161, 781
AgsI	TTSAA	2 cut(s)	313, 335
AjnI	CCWGG	1 cut(s)	128
AjuI	GAANNNNNNNTTGG	2 cut(s)	777, 809
AluBI	AGCT	5 cut(s)	223, 284, 316, 409, 463
AluI	AGCT	5 cut(s)	223, 284, 316, 409, 463
Alw21I	GWGCWC	2 cut(s)	8, 411
Alw26I	GTCTC	1 cut(s)	111
AlwI	GGATC	3 cut(s)	14, 19, 464
AlwNI	CAGNNNCTG	1 cut(s)	404
AoxI	GGCC	3 cut(s)	132, 381, 872
ApaI	GGGCCC	1 cut(s)	136
ApeKI	GCWGC	4 cut(s)	255, 316, 441, 883
AspS9I	GGNCC	3 cut(s)	132, 133, 229
AsuC2I	CCSGG	1 cut(s)	776
AsuHPI	GGTGA	3 cut(s)	469, 764, 809
AvaII	GGWCC	1 cut(s)	229
BaeGI	GKGCMC	3 cut(s)	136, 623, 776
BanI	GGYRCC	1 cut(s)	114
BanII	GRGCYC	2 cut(s)	136, 411
BauI	CACGAG	1 cut(s)	177
Bbv12I	GWGCWC	2 cut(s)	8, 411
BbvI	GCAGC	4 cut(s)	242, 303, 453, 870
BccI	CCATC	2 cut(s)	76, 361
BceAI	ACGGC	2 cut(s)	537, 887
BciT130I	CCWGG	1 cut(s)	130
BclI	TGATCA	2 cut(s)	601, 754
BcnI	CCSGG	1 cut(s)	776
BcoDI	GTCTC	1 cut(s)	111
BfaI	CTAG	1 cut(s)	122
BglI	GCCNNNNNGGC	1 cut(s)	131
BisI	GCNGC	8 cut(s)	256, 317, 429, 442, 875, 878, 881, 884
BlsI	GCNGC	8 cut(s)	257, 318, 430, 443, 876, 879, 882, 885
BmcAI	AGTACT	1 cut(s)	357
Bme1390I	CCNGG	2 cut(s)	130, 776
Bme18I	GGWCC	1 cut(s)	229
BmgT120I	GGNCC	3 cut(s)	132, 133, 229
BmiI	GGNNCC	3 cut(s)	116, 134, 146
BmrFI	CCNGG	2 cut(s)	130, 776
BmrI	ACTGGG	2 cut(s)	817, 844
BmsI	GCATC	1 cut(s)	267
BmuI	ACTGGG	2 cut(s)	817, 844
BpmI	CTGGAG	1 cut(s)	112
Bpu10I	CCTNAGC	1 cut(s)	240
BpuEI	CTTGAG	2 cut(s)	209, 218
BpuMI	CCSGG	1 cut(s)	776
Bsa29I	ATCGAT	1 cut(s)	18
BsaJI	CCNNGG	3 cut(s)	110, 129, 160
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	3 cut(s)	141, 161, 781
Bse1I	ACTGG	4 cut(s)	49, 459, 812, 839
BseBI	CCWGG	1 cut(s)	130
BseCI	ATCGAT	1 cut(s)	18
BseDI	CCNNGG	3 cut(s)	110, 129, 160
BseLI	CCNNNNNNNGG	3 cut(s)	141, 161, 781
BseMII	CTCAG	2 cut(s)	366, 396
BseNI	ACTGG	4 cut(s)	49, 459, 812, 839
BseSI	GKGCMC	3 cut(s)	136, 623, 776
BseX3I	CGGCCG	1 cut(s)	872
BseXI	GCAGC	4 cut(s)	242, 303, 453, 870
Bsh1285I	CGRYCG	2 cut(s)	18, 875
BshFI	GGCC	3 cut(s)	134, 383, 874
BshNI	GGYRCC	1 cut(s)	114
BshVI	ATCGAT	1 cut(s)	18
BsiEI	CGRYCG	2 cut(s)	18, 875
BsiHKAI	GWGCWC	2 cut(s)	8, 411
BsiSI	CCGG	2 cut(s)	776, 856
BslFI	GGGAC	1 cut(s)	213
BslI	CCNNNNNNNGG	3 cut(s)	141, 161, 781
BsmAI	GTCTC	1 cut(s)	111
BsmFI	GGGAC	1 cut(s)	213
BsmI	GAATGC	1 cut(s)	188
BsnI	GGCC	3 cut(s)	134, 383, 874
Bsp120I	GGGCCC	1 cut(s)	132
Bsp1286I	GDGCHC	5 cut(s)	8, 136, 411, 623, 776
Bsp143I	GATC	6 cut(s)	15, 19, 24, 469, 601, 754
Bsp19I	CCATGG	1 cut(s)	110
BspACI	CCGC	5 cut(s)	186, 429, 875, 878, 881
BspANI	GGCC	3 cut(s)	134, 383, 874
BspCNI	CTCAG	2 cut(s)	365, 397
BspDI	ATCGAT	1 cut(s)	18
BspLI	GGNNCC	3 cut(s)	116, 134, 146
BspPI	GGATC	3 cut(s)	14, 19, 464
BspT107I	GGYRCC	1 cut(s)	114
BsrI	ACTGG	4 cut(s)	49, 459, 812, 839
BssECI	CCNNGG	3 cut(s)	110, 129, 160
BssMI	GATC	6 cut(s)	15, 19, 24, 469, 601, 754
BssSI	CACGAG	1 cut(s)	177
BssT1I	CCWWGG	2 cut(s)	110, 160
Bst2BI	CACGAG	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	130
Bst4CI	ACNGT	3 cut(s)	581, 649, 771
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	3 cut(s)	240, 352, 405
BstDSI	CCRYGG	1 cut(s)	110
BstKTI	GATC	6 cut(s)	18, 22, 27, 472, 604, 757
BstMAI	GTCTC	1 cut(s)	111
BstMBI	GATC	6 cut(s)	15, 19, 24, 469, 601, 754
BstMCI	CGRYCG	2 cut(s)	18, 875
BstMWI	GCNNNNNNNGC	5 cut(s)	131, 264, 385, 880, 883
BstNI	CCWGG	1 cut(s)	130
BstSCI	CCNGG	2 cut(s)	128, 774
BstSLI	GKGCMC	3 cut(s)	136, 623, 776
BstV1I	GCAGC	4 cut(s)	242, 303, 453, 870
BstZI	CGGCCG	1 cut(s)	872
Bsu15I	ATCGAT	1 cut(s)	18
BsuRI	GGCC	3 cut(s)	134, 383, 874
BsuTUI	ATCGAT	1 cut(s)	18
BtgI	CCRYGG	1 cut(s)	110
BtsIMutI	CAGTG	2 cut(s)	272, 294
Cac8I	GCNNGC	1 cut(s)	381
CaiI	CAGNNNCTG	1 cut(s)	404
Cfr13I	GGNCC	3 cut(s)	132, 133, 229
ClaI	ATCGAT	1 cut(s)	18
CseI	GACGC	1 cut(s)	646
Csp6I	GTAC	1 cut(s)	356
CviAII	CATG	5 cut(s)	111, 433, 675, 781, 845
CviQI	GTAC	1 cut(s)	356
DdeI	CTNAG	3 cut(s)	240, 352, 405
DpnI	GATC	6 cut(s)	17, 21, 26, 471, 603, 756
DpnII	GATC	6 cut(s)	15, 19, 24, 469, 601, 754
DraIII	CACNNNGTG	1 cut(s)	172
EaeI	YGGCCR	1 cut(s)	872
EagI	CGGCCG	1 cut(s)	872
Ecl136II	GAGCTC	1 cut(s)	409
EclXI	CGGCCG	1 cut(s)	872
Eco130I	CCWWGG	2 cut(s)	110, 160
Eco24I	GRGCYC	2 cut(s)	136, 411
Eco47I	GGWCC	1 cut(s)	229
Eco52I	CGGCCG	1 cut(s)	872
Eco53kI	GAGCTC	1 cut(s)	409
Eco57I	CTGAAG	1 cut(s)	270
EcoICRI	GAGCTC	1 cut(s)	409
EcoO109I	RGGNCCY	3 cut(s)	132, 133, 229
EcoRII	CCWGG	1 cut(s)	128
EcoT14I	CCWWGG	2 cut(s)	110, 160
EcoT38I	GRGCYC	2 cut(s)	136, 411
ErhI	CCWWGG	2 cut(s)	110, 160
FaeI	CATG	5 cut(s)	114, 436, 678, 784, 848
FaqI	GGGAC	1 cut(s)	213
FatI	CATG	5 cut(s)	110, 432, 674, 780, 844
FbaI	TGATCA	2 cut(s)	601, 754
FblI	GTMKAC	1 cut(s)	37
Fnu4HI	GCNGC	8 cut(s)	256, 317, 429, 442, 875, 878, 881, 884
FriOI	GRGCYC	2 cut(s)	136, 411
Fsp4HI	GCNGC	8 cut(s)	256, 317, 429, 442, 875, 878, 881, 884
FspBI	CTAG	1 cut(s)	122
GluI	GCNGC	8 cut(s)	256, 317, 429, 442, 875, 878, 881, 884
GsuI	CTGGAG	1 cut(s)	112
HaeIII	GGCC	3 cut(s)	134, 383, 874
HapII	CCGG	2 cut(s)	776, 856
HgaI	GACGC	1 cut(s)	646
Hin1II	CATG	5 cut(s)	114, 436, 678, 784, 848
HincII	GTYRAC	1 cut(s)	38
HindII	GTYRAC	1 cut(s)	38
HinfI	GANTC	5 cut(s)	104, 201, 527, 785, 812
HpaII	CCGG	2 cut(s)	776, 856
HphI	GGTGA	3 cut(s)	469, 764, 809
Hpy166II	GTNNAC	2 cut(s)	38, 722
Hpy188I	TCNGA	3 cut(s)	15, 24, 790
Hpy188III	TCNNGA	3 cut(s)	142, 599, 605
Hpy8I	GTNNAC	2 cut(s)	38, 722
HpyCH4III	ACNGT	3 cut(s)	581, 649, 771
HpyCH4V	TGCA	5 cut(s)	258, 319, 543, 591, 886
HpyF10VI	GCNNNNNNNGC	5 cut(s)	131, 264, 385, 880, 883
HpyF3I	CTNAG	3 cut(s)	240, 352, 405
Hsp92II	CATG	5 cut(s)	114, 436, 678, 784, 848
Ksp22I	TGATCA	2 cut(s)	601, 754
Kzo9I	GATC	6 cut(s)	15, 19, 24, 469, 601, 754
Lsp1109I	GCAGC	4 cut(s)	242, 303, 453, 870
LweI	GCATC	1 cut(s)	267
MaeI	CTAG	1 cut(s)	122
MaeIII	GTNAC	5 cut(s)	92, 164, 394, 581, 797
MalI	GATC	6 cut(s)	17, 21, 26, 471, 603, 756
MboI	GATC	6 cut(s)	15, 19, 24, 469, 601, 754
MboII	GAAGA	1 cut(s)	563
MhlI	GDGCHC	5 cut(s)	8, 136, 411, 623, 776
MluCI	AATT	2 cut(s)	88, 335
MlyI	GAGTC	2 cut(s)	113, 195
MmeI	TCCRAC	2 cut(s)	500, 813
MnlI	CCTC	7 cut(s)	136, 165, 242, 483, 512, 679, 796
MseI	TTAA	1 cut(s)	219
MslI	CAYNNNNRTG	2 cut(s)	711, 738
MspA1I	CMGCKG	1 cut(s)	883
MspI	CCGG	2 cut(s)	776, 856
MspR9I	CCNGG	2 cut(s)	130, 776
Mva1269I	GAATGC	1 cut(s)	188
MvaI	CCWGG	1 cut(s)	130
MwoI	GCNNNNNNNGC	5 cut(s)	131, 264, 385, 880, 883
NciI	CCSGG	1 cut(s)	776
NcoI	CCATGG	1 cut(s)	110
NdeII	GATC	6 cut(s)	15, 19, 24, 469, 601, 754
NlaIII	CATG	5 cut(s)	114, 436, 678, 784, 848
NlaIV	GGNNCC	3 cut(s)	116, 134, 146
NmuCI	GTSAC	3 cut(s)	164, 581, 797
PctI	GAATGC	1 cut(s)	188
PfeI	GAWTC	3 cut(s)	527, 785, 812
PkrI	GCNGC	8 cut(s)	257, 318, 430, 443, 876, 879, 882, 885
Ple19I	CGATCG	1 cut(s)	18
PleI	GAGTC	2 cut(s)	112, 195
PpsI	GAGTC	2 cut(s)	112, 195
PpuMI	RGGWCCY	1 cut(s)	229
PsiI	TTATAA	1 cut(s)	644
Psp124BI	GAGCTC	1 cut(s)	411
Psp5II	RGGWCCY	1 cut(s)	229
Psp6I	CCWGG	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	128
PspN4I	GGNNCC	3 cut(s)	116, 134, 146
PspOMI	GGGCCC	1 cut(s)	132
PspPI	GGNCC	3 cut(s)	132, 133, 229
PspPPI	RGGWCCY	1 cut(s)	229
PstNI	CAGNNNCTG	1 cut(s)	404
PvuI	CGATCG	1 cut(s)	18
RsaI	GTAC	1 cut(s)	357
RsaNI	GTAC	1 cut(s)	356
RseI	CAYNNNNRTG	2 cut(s)	711, 738
SacI	GAGCTC	1 cut(s)	411
SalI	GTCGAC	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	8 cut(s)	256, 317, 429, 442, 875, 878, 881, 884
Sau3AI	GATC	6 cut(s)	15, 19, 24, 469, 601, 754
Sau96I	GGNCC	3 cut(s)	132, 133, 229
ScaI	AGTACT	1 cut(s)	357
SchI	GAGTC	2 cut(s)	113, 195
ScrFI	CCNGG	2 cut(s)	130, 776
SduI	GDGCHC	5 cut(s)	8, 136, 411, 623, 776
SfaNI	GCATC	1 cut(s)	267
SinI	GGWCC	1 cut(s)	229
SmiMI	CAYNNNNRTG	2 cut(s)	711, 738
SmlI	CTYRAG	2 cut(s)	224, 233
SmoI	CTYRAG	2 cut(s)	224, 233
Sse9I	AATT	2 cut(s)	88, 335
SsiI	CCGC	5 cut(s)	186, 429, 875, 878, 881
SspMI	CTAG	1 cut(s)	122
SstI	GAGCTC	1 cut(s)	411
StyD4I	CCNGG	2 cut(s)	128, 774
StyI	CCWWGG	2 cut(s)	110, 160
TaaI	ACNGT	3 cut(s)	581, 649, 771
TaqI	TCGA	3 cut(s)	18, 37, 507
TasI	AATT	2 cut(s)	88, 335
TatI	WGTACW	1 cut(s)	355
TauI	GCSGC	4 cut(s)	431, 877, 880, 883
TfiI	GAWTC	3 cut(s)	527, 785, 812
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TscAI	CASTG	2 cut(s)	279, 294
TseFI	GTSAC	3 cut(s)	164, 581, 797
TseI	GCWGC	4 cut(s)	255, 316, 441, 883
Tsp45I	GTSAC	3 cut(s)	164, 581, 797
TspDTI	ATGAA	1 cut(s)	362
TspRI	CASTG	2 cut(s)	279, 294
VpaK11BI	GGWCC	1 cut(s)	229
XmiI	GTMKAC	1 cut(s)	37
XspI	CTAG	1 cut(s)	122
ZrmI	AGTACT	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.