Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002264

Physical Location & Seq

Genomic Coordinates Forward (+)

2119318 .. 2120167

Gene Structure 850 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031106

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGCTTCATGATCATCGACCGGGAGAACTCGAGGAGATTCTCATCGCTACTGGTAGCAGGGTAGAAGAACGAGACCCTTCTGATGACAGGCATTGTAGGATTTGCGATACAAGTGGTGATCATAGTACTGAAACGTGCCCCGAAAGATCCAAGGCATATGTAGTGCTTTGTGGGATTTGTGATGATGGCCCATGCGAAAACGAGGCTGACCACAAGGAAGAACATTACGAAGAACTCCTTTTTTGTTATATTTGTAACAAGGTTGGTGAGCACTGGACTGAAAATTGCCCTGACAACGATTGTGACTTTGATCCTCCCAACGGCTGGGACATTACAGAGAATAAACGGATAGATTTGTTCCCTCCGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

124

Amino Acids

14.15

Weight (kDa)

4.4

Isoelectric Point (pI)

53.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002264)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04712 FvH4_2g40191 FvH4_2g40203 FvH4_2g40210 FvH4_2g40220 FvH4_3g18081
rosa_chinensis	RchiOBHm_Chr1g0378061 RchiOBHm_Chr5g0003061 RchiOBHm_Chr5g0030501
rosa_laevigata	RLG00000031096 RLG00000031106 RLG00000031109
rosa_multiflora	Rmu_sc0000280.1_g000001 Rmu_sc0015917.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019880 Rroxscaffold_1G00019910 Rroxscaffold_1G00049800 Rroxscaffold_1G00072540 Rroxscaffold_1G00073090
rosa_rugosa	Rorug04G0396300 Rorug04G0396400 Rorug04G0396500 Rorug04G0396600 Rorug04G0401800 Rorug05G0117400 Rorug05G0334100 Rorug05G0334100
rosa_samantha	Rh5AG028100 Rh5AG028200 Rh5AG210200 Rh5AG396800 Rh5AG396900 Rh5BG028300 Rh5BG209400 Rh5BG408900 Rh5BG409100 Rh5CG027500 Rh5CG030600 Rh5CG030700 Rh5CG433600 Rh5CG433800
rosa_wichuraiana	Rw5G002290 Rw5G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	324
AclWI	GGATC	2 cut(s)	141, 305
AfaI	GTAC	1 cut(s)	127
AfiI	CCNNNNNNNGG	2 cut(s)	320, 324
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	1 cut(s)	66
AlwI	GGATC	2 cut(s)	141, 305
Ama87I	CYCGRG	1 cut(s)	29
AoxI	GGCC	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	188
AsuC2I	CCSGG	1 cut(s)	21
AsuHPI	GGTGA	2 cut(s)	128, 278
AvaI	CYCGRG	1 cut(s)	29
BaeGI	GKGCMC	1 cut(s)	140
Bbv12I	GWGCWC	1 cut(s)	273
BccI	CCATC	1 cut(s)	179
BceAI	ACGGC	1 cut(s)	337
BclI	TGATCA	2 cut(s)	10, 118
BcnI	CCSGG	1 cut(s)	21
BcoDI	GTCTC	1 cut(s)	66
BmcAI	AGTACT	1 cut(s)	127
Bme1390I	CCNGG	1 cut(s)	21
BmeT110I	CYCGRG	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	188
BmrFI	CCNGG	1 cut(s)	21
BpuMI	CCSGG	1 cut(s)	21
BsaBI	GATNNNNATC	1 cut(s)	41
BsaI	GGTCTC	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	2 cut(s)	320, 324
Bse1I	ACTGG	2 cut(s)	55, 278
Bse8I	GATNNNNATC	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	150
BseJI	GATNNNNATC	1 cut(s)	41
BseLI	CCNNNNNNNGG	2 cut(s)	320, 324
BseNI	ACTGG	2 cut(s)	55, 278
BseRI	GAGGAG	1 cut(s)	47
BseSI	GKGCMC	1 cut(s)	140
BseYI	CCCAGC	1 cut(s)	324
Bsh1285I	CGRYCG	1 cut(s)	20
BshFI	GGCC	1 cut(s)	189
BsiEI	CGRYCG	1 cut(s)	20
BsiHKAI	GWGCWC	1 cut(s)	273
BsiHKCI	CYCGRG	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	20
BslFI	GGGAC	1 cut(s)	341
BslI	CCNNNNNNNGG	2 cut(s)	320, 324
BsmAI	GTCTC	1 cut(s)	66
BsmFI	GGGAC	1 cut(s)	341
BsnI	GGCC	1 cut(s)	189
Bso31I	GGTCTC	1 cut(s)	66
BsoBI	CYCGRG	1 cut(s)	29
Bsp1286I	GDGCHC	2 cut(s)	140, 273
Bsp143I	GATC	4 cut(s)	10, 118, 146, 310
BspANI	GGCC	1 cut(s)	189
BspHI	TCATGA	1 cut(s)	7
BspPI	GGATC	2 cut(s)	141, 305
BspTNI	GGTCTC	1 cut(s)	66
BsrI	ACTGG	2 cut(s)	55, 278
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	4 cut(s)	10, 118, 146, 310
BssT1I	CCWWGG	1 cut(s)	150
BstKTI	GATC	4 cut(s)	13, 121, 149, 313
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	4 cut(s)	10, 118, 146, 310
BstMCI	CGRYCG	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	19
BstSLI	GKGCMC	1 cut(s)	140
BstX2I	RGATCY	1 cut(s)	146
BstYI	RGATCY	1 cut(s)	146
BsuRI	GGCC	1 cut(s)	189
BtgZI	GCGATG	1 cut(s)	28
BtsIMutI	CAGTG	1 cut(s)	271
CciI	TCATGA	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	188
Csp6I	GTAC	1 cut(s)	126
CviAII	CATG	2 cut(s)	8, 192
CviJI	RGCY	3 cut(s)	189, 206, 324
CviKI_1	RGCY	3 cut(s)	189, 206, 324
CviQI	GTAC	1 cut(s)	126
DpnI	GATC	4 cut(s)	12, 120, 148, 312
DpnII	GATC	4 cut(s)	10, 118, 146, 310
Eco130I	CCWWGG	1 cut(s)	150
Eco31I	GGTCTC	1 cut(s)	66
Eco88I	CYCGRG	1 cut(s)	29
EcoT14I	CCWWGG	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	2 cut(s)	11, 195
FaiI	YATR	7 cut(s)	9, 123, 157, 159, 193, 249, 370
FalI	AAGNNNNNCTT	2 cut(s)	222, 254
FaqI	GGGAC	1 cut(s)	341
FatI	CATG	2 cut(s)	7, 191
FauNDI	CATATG	1 cut(s)	157
FbaI	TGATCA	2 cut(s)	10, 118
GsaI	CCCAGC	1 cut(s)	328
HaeIII	GGCC	1 cut(s)	189
HapII	CCGG	1 cut(s)	20
Hin1II	CATG	2 cut(s)	11, 195
HinfI	GANTC	1 cut(s)	37
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	2 cut(s)	128, 278
Hpy188I	TCNGA	1 cut(s)	82
Hpy188III	TCNNGA	1 cut(s)	8
HpyAV	CCTTC	1 cut(s)	87
HpyCH4IV	ACGT	1 cut(s)	134
HpySE526I	ACGT	1 cut(s)	134
Hsp92II	CATG	2 cut(s)	11, 195
Ksp22I	TGATCA	2 cut(s)	10, 118
Kzo9I	GATC	4 cut(s)	10, 118, 146, 310
LpnPI	CCDG	7 cut(s)	33, 36, 43, 73, 259, 303, 310
MaeII	ACGT	1 cut(s)	134
MaeIII	GTNAC	2 cut(s)	254, 302
MalI	GATC	4 cut(s)	12, 120, 148, 312
MboI	GATC	4 cut(s)	10, 118, 146, 310
MboII	GAAGA	3 cut(s)	77, 230, 242
MflI	RGATCY	1 cut(s)	146
MhlI	GDGCHC	2 cut(s)	140, 273
MluCI	AATT	1 cut(s)	283
MnlI	CCTC	4 cut(s)	25, 196, 324, 372
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	21
NciI	CCSGG	1 cut(s)	21
NdeI	CATATG	1 cut(s)	157
NdeII	GATC	4 cut(s)	10, 118, 146, 310
NlaIII	CATG	2 cut(s)	11, 195
NmuCI	GTSAC	1 cut(s)	302
PaeR7I	CTCGAG	1 cut(s)	29
PagI	TCATGA	1 cut(s)	7
PfeI	GAWTC	1 cut(s)	37
PflMI	CCANNNNNTGG	1 cut(s)	324
PspFI	CCCAGC	1 cut(s)	324
PspPI	GGNCC	1 cut(s)	188
PspXI	VCTCGAGB	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	146
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
Sau3AI	GATC	4 cut(s)	10, 118, 146, 310
Sau96I	GGNCC	1 cut(s)	188
ScaI	AGTACT	1 cut(s)	127
ScrFI	CCNGG	1 cut(s)	21
SduI	GDGCHC	2 cut(s)	140, 273
SetI	ASST	2 cut(s)	137, 264
Sfr274I	CTCGAG	1 cut(s)	29
SlaI	CTCGAG	1 cut(s)	29
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Sse9I	AATT	1 cut(s)	283
StyD4I	CCNGG	1 cut(s)	19
StyI	CCWWGG	1 cut(s)	150
TaiI	ACGT	1 cut(s)	137
TaqI	TCGA	2 cut(s)	16, 30
TasI	AATT	1 cut(s)	283
TatI	WGTACW	1 cut(s)	125
TfiI	GAWTC	1 cut(s)	37
TscAI	CASTG	1 cut(s)	278
TseFI	GTSAC	1 cut(s)	302
Tsp45I	GTSAC	1 cut(s)	302
TspGWI	ACGGA	2 cut(s)	354, 361
TspRI	CASTG	1 cut(s)	278
Van91I	CCANNNNNTGG	1 cut(s)	324
XhoI	CTCGAG	1 cut(s)	29
ZrmI	AGTACT	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.