Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000280.1

Orthogroup ID

OG0002264

Physical Location & Seq

Genomic Coordinates Reverse (-)

2026 .. 6610

Gene Structure 4585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000280.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

atgttgggagctgagcatttgggaacaacaggagggagaagaacttggacaacaacttcgatttcagctgttacttgtaagaggtcgtttctgcccctactcttttccacaattttggccctgccattcagtcgttctagaatctgcgtagtgtatggatttgttgcgtggcttctagagaaagcacagtggaaagagagagagactccatcgagtgcagccactagccagacacaaacggttcattctacattcggttttgttctcggatacagacgcagcgtgaagaaacccctgaggttgtttttgtgttctgtgtttggtagagagagagaaattagatccagagatagagagagacggagaaggagagacagcgaaagagaaccagagaggaggcccatcaggatttcgtcaaggttgaccaggttctatgcaaagaagtattttgattgttttcttgccactgttcctgtttctgttcgattgaaggctggcatcggacgaatatatcgatcttcatcgttaatactggtggagaaagattctgaacagattacaattgttgcccaagggcgggtgattgaagcagaggatatatactgttcgtatttgtttttgtgcccagttatctctcaaggaatgagcttttcctctggaaagggatttctggtatctggtatgattacgatttttacatcaggattcctatggaagatgatctggaattttgttggtcttttcggcttctttcgaggaaaagaagacacagctggagatcctggaccagaagagctggagaagatccttgagcgccctcaatctcctgtggaaccgcaaagaggcagcgacgaagtaaaaccaaaacgtgtgttttgtttgatctgtaaagggaatggcgaccacgaaactataaattgcccggacaaatcagagggatatgtaaccctttgtaggatttgtgatgacggtccatgtgaaaatgaggatgatccagaccacaaggaagaacattatgaatatctcatgctttgtaactgttgtggagctatcggtagtcactgggaagatacctgctctatgaattccagtgataatgattgcgacttttatcctcgttcttggctccaacgcggccaataccaccttagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

384

Amino Acids

43.88

Weight (kDa)

8.5

Isoelectric Point (pI)

56.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002264)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04712 FvH4_2g40191 FvH4_2g40203 FvH4_2g40210 FvH4_2g40220 FvH4_3g18081
rosa_chinensis	RchiOBHm_Chr1g0378061 RchiOBHm_Chr5g0003061 RchiOBHm_Chr5g0030501
rosa_laevigata	RLG00000031096 RLG00000031106 RLG00000031109
rosa_multiflora	Rmu_sc0000280.1_g000001 Rmu_sc0015917.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019880 Rroxscaffold_1G00019910 Rroxscaffold_1G00049800 Rroxscaffold_1G00072540 Rroxscaffold_1G00073090
rosa_rugosa	Rorug04G0396300 Rorug04G0396400 Rorug04G0396500 Rorug04G0396600 Rorug04G0401800 Rorug05G0117400 Rorug05G0334100 Rorug05G0334100
rosa_samantha	Rh5AG028100 Rh5AG028200 Rh5AG210200 Rh5AG396800 Rh5AG396900 Rh5BG028300 Rh5BG209400 Rh5BG408900 Rh5BG409100 Rh5CG027500 Rh5CG030600 Rh5CG030700 Rh5CG433600 Rh5CG433800
rosa_wichuraiana	Rw5G002290 Rw5G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1082
AccII	CGCG	1 cut(s)	1134
AciI	CCGC	3 cut(s)	577, 836, 1134
AclWI	GGATC	4 cut(s)	336, 773, 799, 986
AcoI	YGGCCR	1 cut(s)	1135
AcsI	RAATTY	2 cut(s)	727, 1084
AfiI	CCNNNNNNNGG	4 cut(s)	576, 577, 842, 954
AflIII	ACRYGT	1 cut(s)	868
AgsI	TTSAA	2 cut(s)	490, 587
AjnI	CCWGG	2 cut(s)	425, 781
AluBI	AGCT	7 cut(s)	11, 68, 648, 773, 796, 1049, 1152
AluI	AGCT	7 cut(s)	11, 68, 648, 773, 796, 1049, 1152
Alw26I	GTCTC	3 cut(s)	197, 352, 366
AlwI	GGATC	4 cut(s)	336, 773, 799, 986
AoxI	GGCC	3 cut(s)	117, 398, 1135
ApeKI	GCWGC	3 cut(s)	218, 279, 846
ApoI	RAATTY	2 cut(s)	727, 1084
ArsI	GACNNNNNNTTYG	2 cut(s)	40, 72
AspLEI	GCGC	1 cut(s)	816
AspS9I	GGNCC	4 cut(s)	118, 399, 785, 971
AsuC2I	CCSGG	1 cut(s)	923
AsuHPI	GGTGA	1 cut(s)	592
AvaII	GGWCC	2 cut(s)	785, 971
AxyI	CCTNAGG	1 cut(s)	296
BaeGI	GKGCMC	1 cut(s)	626
BbsI	GAAGAC	1 cut(s)	771
BbvI	GCAGC	3 cut(s)	230, 291, 858
BccI	CCATC	2 cut(s)	217, 410
BciT130I	CCWGG	2 cut(s)	427, 783
BciVI	GTATCC	1 cut(s)	263
BcnI	CCSGG	1 cut(s)	923
BcoDI	GTCTC	3 cut(s)	197, 352, 366
BfaI	CTAG	4 cut(s)	138, 176, 225, 1153
BfoI	RGCGCY	1 cut(s)	817
BfuAI	ACCTGC	1 cut(s)	1082
BfuI	GTATCC	1 cut(s)	263
BisI	GCNGC	4 cut(s)	219, 280, 847, 1135
BlpI	GCTNAGC	1 cut(s)	12
BlsI	GCNGC	4 cut(s)	220, 281, 848, 1136
Bme1390I	CCNGG	3 cut(s)	427, 783, 923
Bme18I	GGWCC	2 cut(s)	785, 971
BmgT120I	GGNCC	4 cut(s)	118, 399, 785, 971
BmiI	GGNNCC	2 cut(s)	834, 1127
BmrFI	CCNGG	3 cut(s)	427, 783, 923
BmrI	ACTGGG	2 cut(s)	620, 1072
BmsI	GCATC	1 cut(s)	507
BmuI	ACTGGG	2 cut(s)	620, 1072
BpiI	GAAGAC	1 cut(s)	771
BplI	GAGNNNNNCTC	2 cut(s)	190, 222
BpmI	CTGGAG	2 cut(s)	795, 818
Bpu10I	CCTNAGC	1 cut(s)	1148
Bpu1102I	GCTNAGC	1 cut(s)	12
BpuEI	CTTGAG	2 cut(s)	621, 830
BpuMI	CCSGG	1 cut(s)	923
Bsa29I	ATCGAT	1 cut(s)	514
BsaBI	GATNNNNATC	1 cut(s)	520
BsaJI	CCNNGG	1 cut(s)	571
Bsc4I	CCNNNNNNNGG	4 cut(s)	576, 577, 842, 954
Bse1I	ACTGG	4 cut(s)	537, 626, 1067, 1089
Bse21I	CCTNAGG	1 cut(s)	296
Bse8I	GATNNNNATC	1 cut(s)	520
BseBI	CCWGG	2 cut(s)	427, 783
BseCI	ATCGAT	1 cut(s)	514
BseDI	CCNNGG	1 cut(s)	571
BseGI	GGATG	1 cut(s)	994
BseJI	GATNNNNATC	1 cut(s)	520
BseLI	CCNNNNNNNGG	4 cut(s)	576, 577, 842, 954
BseMII	CTCAG	1 cut(s)	287
BseNI	ACTGG	4 cut(s)	537, 626, 1067, 1089
BseRI	GAGGAG	1 cut(s)	409
BseSI	GKGCMC	1 cut(s)	626
BseXI	GCAGC	3 cut(s)	230, 291, 858
BsgI	GTGCAG	1 cut(s)	237
Bsh1236I	CGCG	1 cut(s)	1134
BshFI	GGCC	3 cut(s)	119, 400, 1137
BshVI	ATCGAT	1 cut(s)	514
BsiSI	CCGG	1 cut(s)	923
BslI	CCNNNNNNNGG	4 cut(s)	576, 577, 842, 954
BsmAI	GTCTC	3 cut(s)	197, 352, 366
BsmBI	CGTCTC	1 cut(s)	352
BsnI	GGCC	3 cut(s)	119, 400, 1137
Bsp1286I	GDGCHC	1 cut(s)	626
Bsp143I	GATC	7 cut(s)	341, 515, 720, 778, 804, 882, 991
Bsp1720I	GCTNAGC	1 cut(s)	12
BspACI	CCGC	3 cut(s)	577, 836, 1134
BspANI	GGCC	3 cut(s)	119, 400, 1137
BspCNI	CTCAG	2 cut(s)	4, 288
BspDI	ATCGAT	1 cut(s)	514
BspFNI	CGCG	1 cut(s)	1134
BspLI	GGNNCC	2 cut(s)	834, 1127
BspMI	ACCTGC	1 cut(s)	1082
BspPI	GGATC	4 cut(s)	336, 773, 799, 986
BspQI	GCTCTTC	1 cut(s)	786
BsrI	ACTGG	4 cut(s)	537, 626, 1067, 1089
BssECI	CCNNGG	1 cut(s)	571
BssMI	GATC	7 cut(s)	341, 515, 720, 778, 804, 882, 991
BssT1I	CCWWGG	1 cut(s)	571
Bst2UI	CCWGG	2 cut(s)	427, 783
Bst4CI	ACNGT	6 cut(s)	189, 241, 469, 605, 971, 1040
Bst6I	CTCTTC	1 cut(s)	786
BstC8I	GCNNGC	1 cut(s)	496
BstDEI	CTNAG	3 cut(s)	12, 296, 1148
BstF5I	GGATG	1 cut(s)	994
BstFNI	CGCG	1 cut(s)	1134
BstH2I	RGCGCY	1 cut(s)	817
BstHHI	GCGC	1 cut(s)	816
BstKTI	GATC	7 cut(s)	344, 518, 723, 781, 807, 885, 994
BstMAI	GTCTC	3 cut(s)	197, 352, 366
BstMBI	GATC	7 cut(s)	341, 515, 720, 778, 804, 882, 991
BstNI	CCWGG	2 cut(s)	427, 783
BstSCI	CCNGG	3 cut(s)	425, 781, 921
BstSLI	GKGCMC	1 cut(s)	626
BstUI	CGCG	1 cut(s)	1134
BstV1I	GCAGC	3 cut(s)	230, 291, 858
BstV2I	GAAGAC	1 cut(s)	771
BstX2I	RGATCY	3 cut(s)	341, 778, 804
BstXI	CCANNNNNNTGG	1 cut(s)	115
BstYI	RGATCY	3 cut(s)	341, 778, 804
Bsu15I	ATCGAT	1 cut(s)	514
Bsu36I	CCTNAGG	1 cut(s)	296
BsuI	GTATCC	1 cut(s)	263
BsuRI	GGCC	3 cut(s)	119, 400, 1137
BsuTUI	ATCGAT	1 cut(s)	514
BtsCI	GGATG	1 cut(s)	994
BtsIMutI	CAGTG	4 cut(s)	194, 465, 1060, 1096
BveI	ACCTGC	1 cut(s)	1082
Cac8I	GCNNGC	1 cut(s)	496
CfoI	GCGC	1 cut(s)	816
Cfr13I	GGNCC	4 cut(s)	118, 399, 785, 971
ClaI	ATCGAT	1 cut(s)	514
CseI	GACGC	1 cut(s)	285
CsiI	ACCWGGT	1 cut(s)	425
CviAII	CATG	2 cut(s)	975, 1027
DdeI	CTNAG	3 cut(s)	12, 296, 1148
DpnI	GATC	7 cut(s)	343, 517, 722, 780, 806, 884, 993
DpnII	GATC	7 cut(s)	341, 515, 720, 778, 804, 882, 991
EaeI	YGGCCR	1 cut(s)	1135
Eam1104I	CTCTTC	1 cut(s)	786
EarI	CTCTTC	1 cut(s)	786
Eco130I	CCWWGG	1 cut(s)	571
Eco47I	GGWCC	2 cut(s)	785, 971
Eco81I	CCTNAGG	1 cut(s)	296
EcoRI	GAATTC	1 cut(s)	1084
EcoRII	CCWGG	2 cut(s)	425, 781
EcoT14I	CCWWGG	1 cut(s)	571
ErhI	CCWWGG	1 cut(s)	571
Esp3I	CGTCTC	1 cut(s)	352
FaeI	CATG	2 cut(s)	978, 1030
FatI	CATG	2 cut(s)	974, 1026
FauI	CCCGC	1 cut(s)	570
Fnu4HI	GCNGC	4 cut(s)	219, 280, 847, 1135
FokI	GGATG	1 cut(s)	1001
Fsp4HI	GCNGC	4 cut(s)	219, 280, 847, 1135
FspBI	CTAG	4 cut(s)	138, 176, 225, 1153
GlaI	GCGC	1 cut(s)	815
GluI	GCNGC	4 cut(s)	219, 280, 847, 1135
GsuI	CTGGAG	2 cut(s)	795, 818
HaeII	RGCGCY	1 cut(s)	817
HaeIII	GGCC	3 cut(s)	119, 400, 1137
HapII	CCGG	1 cut(s)	923
HgaI	GACGC	1 cut(s)	285
HhaI	GCGC	1 cut(s)	816
Hin1II	CATG	2 cut(s)	978, 1030
Hin6I	GCGC	1 cut(s)	814
HinP1I	GCGC	1 cut(s)	814
HincII	GTYRAC	1 cut(s)	423
HindII	GTYRAC	1 cut(s)	423
HinfI	GANTC	4 cut(s)	141, 205, 545, 705
HpaII	CCGG	1 cut(s)	923
HphI	GGTGA	1 cut(s)	592
Hpy166II	GTNNAC	1 cut(s)	423
Hpy188I	TCNGA	4 cut(s)	269, 503, 550, 934
Hpy188III	TCNNGA	8 cut(s)	138, 176, 345, 406, 657, 702, 724, 995
Hpy8I	GTNNAC	1 cut(s)	423
Hpy99I	CGWCG	1 cut(s)	854
HpyAV	CCTTC	2 cut(s)	360, 484
HpyCH4III	ACNGT	6 cut(s)	189, 241, 469, 605, 971, 1040
HpyCH4IV	ACGT	1 cut(s)	868
HpyCH4V	TGCA	2 cut(s)	218, 437
HpyF3I	CTNAG	3 cut(s)	12, 296, 1148
HpySE526I	ACGT	1 cut(s)	868
Hsp92II	CATG	2 cut(s)	978, 1030
HspAI	GCGC	1 cut(s)	814
Kzo9I	GATC	7 cut(s)	341, 515, 720, 778, 804, 882, 991
LguI	GCTCTTC	1 cut(s)	786
LmnI	GCTCC	3 cut(s)	8, 1046, 1131
Lsp1109I	GCAGC	3 cut(s)	230, 291, 858
LweI	GCATC	1 cut(s)	507
MabI	ACCWGGT	1 cut(s)	425
MaeI	CTAG	4 cut(s)	138, 176, 225, 1153
MaeII	ACGT	1 cut(s)	868
MaeIII	GTNAC	4 cut(s)	70, 943, 1034, 1058
MalI	GATC	7 cut(s)	343, 517, 722, 780, 806, 884, 993
MboI	GATC	7 cut(s)	341, 515, 720, 778, 804, 882, 991
MboII	GAAGA	9 cut(s)	51, 298, 510, 727, 776, 803, 814, 1019, 1079
MfeI	CAATTG	1 cut(s)	561
MflI	RGATCY	3 cut(s)	341, 778, 804
MhlI	GDGCHC	1 cut(s)	626
MluCI	AATT	6 cut(s)	111, 336, 561, 727, 916, 1084
MlyI	GAGTC	1 cut(s)	199
MmeI	TCCRAC	1 cut(s)	1153
MseI	TTAA	1 cut(s)	527
MspA1I	CMGCKG	2 cut(s)	68, 773
MspI	CCGG	1 cut(s)	923
MspR9I	CCNGG	3 cut(s)	427, 783, 923
MunI	CAATTG	1 cut(s)	561
MvaI	CCWGG	2 cut(s)	427, 783
MvnI	CGCG	1 cut(s)	1134
NciI	CCSGG	1 cut(s)	923
NdeII	GATC	7 cut(s)	341, 515, 720, 778, 804, 882, 991
NlaIII	CATG	2 cut(s)	978, 1030
NlaIV	GGNNCC	2 cut(s)	834, 1127
NmuCI	GTSAC	1 cut(s)	1058
PciSI	GCTCTTC	1 cut(s)	786
PcsI	WCGNNNNNNNCGW	1 cut(s)	511
PfeI	GAWTC	3 cut(s)	141, 545, 705
PfoI	TCCNGGA	1 cut(s)	781
PkrI	GCNGC	4 cut(s)	220, 281, 848, 1136
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
Psp6I	CCWGG	2 cut(s)	425, 781
PspGI	CCWGG	2 cut(s)	425, 781
PspN4I	GGNNCC	2 cut(s)	834, 1127
PspPI	GGNCC	4 cut(s)	118, 399, 785, 971
PsuI	RGATCY	3 cut(s)	341, 778, 804
PvuII	CAGCTG	2 cut(s)	68, 773
SapI	GCTCTTC	1 cut(s)	786
SaqAI	TTAA	1 cut(s)	527
SatI	GCNGC	4 cut(s)	219, 280, 847, 1135
Sau3AI	GATC	7 cut(s)	341, 515, 720, 778, 804, 882, 991
Sau96I	GGNCC	4 cut(s)	118, 399, 785, 971
SchI	GAGTC	1 cut(s)	199
ScrFI	CCNGG	3 cut(s)	427, 783, 923
SduI	GDGCHC	1 cut(s)	626
SexAI	ACCWGGT	1 cut(s)	425
SfaNI	GCATC	1 cut(s)	507
SinI	GGWCC	2 cut(s)	785, 971
SmlI	CTYRAG	2 cut(s)	636, 809
SmoI	CTYRAG	2 cut(s)	636, 809
Sse9I	AATT	6 cut(s)	111, 336, 561, 727, 916, 1084
SsiI	CCGC	3 cut(s)	577, 836, 1134
SspMI	CTAG	4 cut(s)	138, 176, 225, 1153
StyD4I	CCNGG	3 cut(s)	425, 781, 921
StyI	CCWWGG	1 cut(s)	571
TaaI	ACNGT	6 cut(s)	189, 241, 469, 605, 971, 1040
TaiI	ACGT	1 cut(s)	871
TaqI	TCGA	5 cut(s)	59, 212, 484, 514, 754
TasI	AATT	6 cut(s)	111, 336, 561, 727, 916, 1084
TauI	GCSGC	1 cut(s)	1137
TfiI	GAWTC	3 cut(s)	141, 545, 705
Tru1I	TTAA	1 cut(s)	527
Tru9I	TTAA	1 cut(s)	527
TscAI	CASTG	4 cut(s)	194, 472, 1067, 1096
TseFI	GTSAC	1 cut(s)	1058
TseI	GCWGC	3 cut(s)	218, 279, 846
Tsp45I	GTSAC	1 cut(s)	1058
TspDTI	ATGAA	4 cut(s)	233, 510, 1032, 1097
TspGWI	ACGGA	1 cut(s)	376
TspRI	CASTG	4 cut(s)	194, 472, 1067, 1096
VpaK11BI	GGWCC	2 cut(s)	785, 971
XapI	RAATTY	2 cut(s)	727, 1084
XbaI	TCTAGA	2 cut(s)	137, 175
XspI	CTAG	4 cut(s)	138, 176, 225, 1153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.