Rw5G002290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0002264
Physical Location & Seq
Reverse (-)
1938132 .. 1938576
445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G002290.1

Sequence Viewer

Length: 240 bp
ATGATCTGCAAAGAGGTGTACCATAAGGCTCCTGGTATGCTTTTTGTTTCAGGGTTCCTGAAGAAAATTATTCACCACTTTCTTGGACTGCTCCGAGTGTTTCGAGGAGAACAAGATACAGCCGCCAGCGCAAGTGGTCAGCACCAGAAGCAGGCTCAGCCGGCGAAGCTTCATGATCCTCGACCGGGAGAACTCGAGGAGATTCTCATCGCTACTGGATTTTGTTTTTCAATTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

8.82

Weight (kDa)

7.87

Isoelectric Point (pI)

38.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 123
AclWI GGATC 1 cut(s) 170
AcuI CTGAAG 1 cut(s) 80
AfaI GTAC 1 cut(s) 20
AfiI CCNNNNNNNGG 2 cut(s) 151, 185
AgsI TTSAA 2 cut(s) 231, 236
AjnI CCWGG 1 cut(s) 31
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
AlwI GGATC 1 cut(s) 170
Ama87I CYCGRG 1 cut(s) 194
AspLEI GCGC 1 cut(s) 131
AsuC2I CCSGG 1 cut(s) 186
AsuHPI GGTGA 1 cut(s) 65
AvaI CYCGRG 1 cut(s) 194
BciT130I CCWGG 1 cut(s) 33
BcnI CCSGG 1 cut(s) 186
BisI GCNGC 1 cut(s) 123
BlpI GCTNAGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 124
Bme1390I CCNGG 2 cut(s) 33, 186
BmeT110I CYCGRG 1 cut(s) 194
BmiI GGNNCC 2 cut(s) 30, 56
BmrFI CCNGG 2 cut(s) 33, 186
Bpu1102I GCTNAGC 1 cut(s) 156
BpuMI CCSGG 1 cut(s) 186
BsaBI GATNNNNATC 1 cut(s) 206
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 185
Bse118I RCCGGY 1 cut(s) 160
Bse1I ACTGG 1 cut(s) 220
Bse8I GATNNNNATC 1 cut(s) 206
BseBI CCWGG 1 cut(s) 33
BseJI GATNNNNATC 1 cut(s) 206
BseLI CCNNNNNNNGG 2 cut(s) 151, 185
BseMII CTCAG 1 cut(s) 170
BseNI ACTGG 1 cut(s) 220
BseRI GAGGAG 2 cut(s) 120, 212
Bsh1285I CGRYCG 1 cut(s) 185
BsiEI CGRYCG 1 cut(s) 185
BsiHKCI CYCGRG 1 cut(s) 194
BsiSI CCGG 2 cut(s) 161, 185
BslI CCNNNNNNNGG 2 cut(s) 151, 185
BsoBI CYCGRG 1 cut(s) 194
Bsp143I GATC 2 cut(s) 3, 175
Bsp1720I GCTNAGC 1 cut(s) 156
BspACI CCGC 1 cut(s) 123
BspCNI CTCAG 1 cut(s) 169
BspHI TCATGA 1 cut(s) 172
BspLI GGNNCC 2 cut(s) 30, 56
BspPI GGATC 1 cut(s) 170
BsrFI RCCGGY 1 cut(s) 160
BsrI ACTGG 1 cut(s) 220
BssAI RCCGGY 1 cut(s) 160
BssMI GATC 2 cut(s) 3, 175
Bst2UI CCWGG 1 cut(s) 33
BstC8I GCNNGC 3 cut(s) 127, 153, 162
BstDEI CTNAG 1 cut(s) 156
BstHHI GCGC 1 cut(s) 131
BstKTI GATC 2 cut(s) 6, 178
BstMBI GATC 2 cut(s) 3, 175
BstMCI CGRYCG 1 cut(s) 185
BstMWI GCNNNNNNNGC 5 cut(s) 128, 148, 157, 161, 166
BstNI CCWGG 1 cut(s) 33
BstSCI CCNGG 2 cut(s) 31, 184
BstXI CCANNNNNNTGG 1 cut(s) 83
BtgZI GCGATG 1 cut(s) 193
Cac8I GCNNGC 3 cut(s) 127, 153, 162
CciI TCATGA 1 cut(s) 172
CfoI GCGC 1 cut(s) 131
Cfr10I RCCGGY 1 cut(s) 160
Csp6I GTAC 1 cut(s) 19
CviAII CATG 1 cut(s) 173
CviJI RGCY 5 cut(s) 29, 122, 155, 160, 169
CviKI_1 RGCY 5 cut(s) 29, 122, 155, 160, 169
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 1 cut(s) 156
DpnI GATC 2 cut(s) 5, 177
DpnII GATC 2 cut(s) 3, 175
Eco57I CTGAAG 1 cut(s) 80
Eco88I CYCGRG 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 31
FaeI CATG 1 cut(s) 176
FaiI YATR 3 cut(s) 24, 38, 174
FatI CATG 1 cut(s) 172
Fnu4HI GCNGC 1 cut(s) 123
Fsp4HI GCNGC 1 cut(s) 123
GlaI GCGC 1 cut(s) 130
GluI GCNGC 1 cut(s) 123
HapII CCGG 2 cut(s) 161, 185
HhaI GCGC 1 cut(s) 131
Hin1II CATG 1 cut(s) 176
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 1 cut(s) 202
HpaII CCGG 2 cut(s) 161, 185
HphI GGTGA 1 cut(s) 65
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 1 cut(s) 95
Hpy188III TCNNGA 2 cut(s) 58, 173
Hpy8I GTNNAC 1 cut(s) 19
HpyCH4V TGCA 1 cut(s) 9
HpyF10VI GCNNNNNNNGC 5 cut(s) 128, 148, 157, 161, 166
HpyF3I CTNAG 1 cut(s) 156
Hsp92II CATG 1 cut(s) 176
HspAI GCGC 1 cut(s) 129
KroI GCCGGC 1 cut(s) 160
KroNI GCCGGC 1 cut(s) 162
Kzo9I GATC 2 cut(s) 3, 175
LmnI GCTCC 2 cut(s) 34, 96
MalI GATC 2 cut(s) 5, 177
MboI GATC 2 cut(s) 3, 175
MboII GAAGA 1 cut(s) 73
MfeI CAATTG 1 cut(s) 231
MluCI AATT 2 cut(s) 66, 231
MnlI CCTC 4 cut(s) 7, 98, 189, 190
MroNI GCCGGC 1 cut(s) 160
MspI CCGG 2 cut(s) 161, 185
MspR9I CCNGG 2 cut(s) 33, 186
MunI CAATTG 1 cut(s) 231
MvaI CCWGG 1 cut(s) 33
MwoI GCNNNNNNNGC 5 cut(s) 128, 148, 157, 161, 166
NaeI GCCGGC 1 cut(s) 162
NciI CCSGG 1 cut(s) 186
NdeII GATC 2 cut(s) 3, 175
NgoMIV GCCGGC 1 cut(s) 160
NlaIII CATG 1 cut(s) 176
NlaIV GGNNCC 2 cut(s) 30, 56
PaeR7I CTCGAG 1 cut(s) 194
PagI TCATGA 1 cut(s) 172
PdiI GCCGGC 1 cut(s) 162
PfeI GAWTC 1 cut(s) 202
PkrI GCNGC 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 31
PspGI CCWGG 1 cut(s) 31
PspN4I GGNNCC 2 cut(s) 30, 56
PspXI VCTCGAGB 1 cut(s) 194
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 2 cut(s) 3, 175
ScrFI CCNGG 2 cut(s) 33, 186
SetI ASST 2 cut(s) 18, 171
Sfr274I CTCGAG 1 cut(s) 194
SlaI CTCGAG 1 cut(s) 194
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 2 cut(s) 66, 231
SsiI CCGC 1 cut(s) 123
StyD4I CCNGG 2 cut(s) 31, 184
TaqI TCGA 3 cut(s) 103, 181, 195
TasI AATT 2 cut(s) 66, 231
TauI GCSGC 1 cut(s) 125
TfiI GAWTC 1 cut(s) 202
TspDTI ATGAA 1 cut(s) 161
XcmI CCANNNNNNNNNTGG 1 cut(s) 29
XhoI CTCGAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.