Rroxscaffold_1G00049800

UDP-arabinose 4-epimerase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
70139346 .. 70142729
3384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00049800.1

Sequence Viewer

Length: 1038 bp
ATGGCATTCACGCTTGAAGACGACGACGACCGCCCTCCCTCGACCTCACCGCCCTCTCTCTCGGCCACCGGTTCGACTACCGCGACCGCGCCGTCTCCCTTCTCTCTCTCCTCCGCGCGCTCTCTCTCCCCCCCCCCTCTCTCTCTCTCTCTCTCCTCCGCGACGATGATTTGGCCTTTGCCGAGTCCTGCTCCATTCTGCGGCCCAACTCCACCGCCGGTGAGTTGTTTCCGATTCTCTCTCTCCGGCGAGATTCCGAGGAGCATCGCCAACCCGACTCACCTTCGGCTCGTACAATCGGTTTTCCGATTAGGTTCGACGAGCTTCGACGCTGGACCACAACCTGTTGGAATGAACACTGCAGAGGTTATAGCCAATTGCACGGCGCTAGCCTTGATTCAAGGATTCCGGAGGAAGATGATCTGGAATTTTGTTGGTCTTTTCGGCTTCTTTCGAGGAAAAGAAGACACAGCCGGAGATCCTGGACCAGAAGAGCCGGAGAAGATCCTTGAGCGCCCTCAATCTCCTGTGGAACCGCAAACAGGCAGCGACGAAGTAAAACCAAAACTTGTGTTTTGTTTGATCTGTAAAGAGAATGGCGACCACGAAACTATAAATTGCCCGGACAAATCAAAGGGATATGAAACCCTTTGTAGGATTTGTGATGACGGTCGATGTGAAAATAAGGATGATCCAGACCACAAGGAAGAACATTATGAATATCTCAAGCTTTGTGGCTATTGTGGAGCTATCGGATCAGATCCTGAGGGAAGATTAGGAGAGGCTGATCGCCCTAAGCTACACGAGCGGGCCCGAATATCTGGAGCTTGTTTTGATGCAGCTCGAGGAATTATTTCTGGACTGAAGGTCAGAGGAATAGATTATGCGACACCTGATGGCACTTGCGTGAGGGACTATATTGATGTCACTGACCTGGTTGATGCTCATGTAAAAGCTCTTGCCAACGCACAGCCAAGTAAAGTTGGCCTCTACAATGTGGGAGCTGGAAAAGGTTGGGAAATCCACCTTCTTTCTTAA

Protein Analysis

345

Amino Acids

37.17

Weight (kDa)

5.27

Isoelectric Point (pI)

45.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 91
AccBSI CCGCTC 1 cut(s) 808
AccII CGCG 5 cut(s) 83, 89, 116, 118, 161
AccIII TCCGGA 1 cut(s) 408
AclWI GGATC 5 cut(s) 473, 499, 686, 755, 763
AcoI YGGCCR 1 cut(s) 63
AcsI RAATTY 1 cut(s) 427
AcuI CTGAAG 1 cut(s) 884
AfaI GTAC 1 cut(s) 294
AfiI CCNNNNNNNGG 3 cut(s) 200, 542, 654
AgeI ACCGGT 1 cut(s) 68
AgsI TTSAA 2 cut(s) 17, 401
AhdI GACNNNNNGTC 1 cut(s) 866
AjnI CCWGG 2 cut(s) 481, 933
AleI CACNNNNGTG 1 cut(s) 905
AluBI AGCT 8 cut(s) 324, 730, 749, 799, 827, 842, 956, 1004
AluI AGCT 8 cut(s) 324, 730, 749, 799, 827, 842, 956, 1004
Alw26I GTCTC 1 cut(s) 99
AlwI GGATC 5 cut(s) 473, 499, 686, 755, 763
AlwNI CAGNNNCTG 1 cut(s) 764
Ama87I CYCGRG 1 cut(s) 843
Aor13HI TCCGGA 1 cut(s) 408
AoxI GGCC 5 cut(s) 63, 173, 202, 810, 985
ApaI GGGCCC 1 cut(s) 814
ApeKI GCWGC 2 cut(s) 546, 839
ApoI RAATTY 1 cut(s) 427
AsiGI ACCGGT 1 cut(s) 68
Asp700I GAANNNNTTC 1 cut(s) 853
AspLEI GCGC 5 cut(s) 91, 118, 120, 388, 516
AspS9I GGNCC 5 cut(s) 203, 335, 485, 810, 811
AsuC2I CCSGG 1 cut(s) 623
AsuHPI GGTGA 3 cut(s) 39, 232, 272
AsuNHI GCTAGC 1 cut(s) 388
AvaI CYCGRG 1 cut(s) 843
AvaII GGWCC 2 cut(s) 335, 485
AxyI CCTNAGG 1 cut(s) 765
BaeGI GKGCMC 1 cut(s) 814
BanII GRGCYC 1 cut(s) 814
BauI CACGAG 1 cut(s) 803
BbsI GAAGAC 2 cut(s) 24, 471
BbvI GCAGC 2 cut(s) 558, 851
BccI CCATC 1 cut(s) 890
BceAI ACGGC 2 cut(s) 76, 399
BciT130I CCWGG 2 cut(s) 483, 935
BcnI CCSGG 1 cut(s) 623
BcoDI GTCTC 1 cut(s) 99
BfaI CTAG 1 cut(s) 389
BfmI CTRYAG 1 cut(s) 360
BfoI RGCGCY 2 cut(s) 389, 517
BisI GCNGC 3 cut(s) 202, 547, 840
BlsI GCNGC 3 cut(s) 203, 548, 841
Bme1390I CCNGG 3 cut(s) 483, 623, 935
Bme18I GGWCC 2 cut(s) 335, 485
BmeRI GACNNNNNGTC 1 cut(s) 866
BmeT110I CYCGRG 1 cut(s) 843
BmgT120I GGNCC 5 cut(s) 203, 335, 485, 810, 811
BmiI GGNNCC 2 cut(s) 534, 812
BmrFI CCNGG 3 cut(s) 483, 623, 935
BmsI GCATC 3 cut(s) 273, 826, 931
BmtI GCTAGC 1 cut(s) 392
BpiI GAAGAC 2 cut(s) 24, 471
BplI GAGNNNNNCTC 2 cut(s) 175, 207
BpmI CTGGAG 1 cut(s) 843
Bpu10I CCTNAGC 1 cut(s) 795
BpuEI CTTGAG 2 cut(s) 530, 710
BpuMI CCSGG 1 cut(s) 623
BsaJI CCNNGG 1 cut(s) 257
BsaWI WCCGGW 2 cut(s) 68, 408
Bsc4I CCNNNNNNNGG 3 cut(s) 200, 542, 654
Bse118I RCCGGY 2 cut(s) 68, 217
Bse21I CCTNAGG 1 cut(s) 765
BseAI TCCGGA 1 cut(s) 408
BseBI CCWGG 2 cut(s) 483, 935
BseDI CCNNGG 1 cut(s) 257
BseGI GGATG 1 cut(s) 694
BseLI CCNNNNNNNGG 3 cut(s) 200, 542, 654
BseMII CTCAG 1 cut(s) 756
BsePI GCGCGC 1 cut(s) 116
BseRI GAGGAG 3 cut(s) 100, 145, 274
BseSI GKGCMC 1 cut(s) 814
BseXI GCAGC 2 cut(s) 558, 851
Bsh1236I CGCG 5 cut(s) 83, 89, 116, 118, 161
Bsh1285I CGRYCG 3 cut(s) 31, 87, 673
BshFI GGCC 5 cut(s) 65, 175, 204, 812, 987
BshTI ACCGGT 1 cut(s) 68
BsiEI CGRYCG 3 cut(s) 31, 87, 673
BsiHKCI CYCGRG 1 cut(s) 843
BsiSI CCGG 7 cut(s) 69, 218, 246, 409, 474, 497, 623
BslFI GGGAC 1 cut(s) 926
BslI CCNNNNNNNGG 3 cut(s) 200, 542, 654
BsmAI GTCTC 1 cut(s) 99
BsmBI CGTCTC 1 cut(s) 99
BsmFI GGGAC 1 cut(s) 926
BsmI GAATGC 1 cut(s) 5
BsnI GGCC 5 cut(s) 65, 175, 204, 812, 987
BsoBI CYCGRG 1 cut(s) 843
Bsp120I GGGCCC 1 cut(s) 810
Bsp1286I GDGCHC 1 cut(s) 814
Bsp13I TCCGGA 1 cut(s) 408
Bsp143I GATC 8 cut(s) 420, 478, 504, 582, 691, 755, 760, 787
BspANI GGCC 5 cut(s) 65, 175, 204, 812, 987
BspCNI CTCAG 1 cut(s) 757
BspEI TCCGGA 1 cut(s) 408
BspFNI CGCG 5 cut(s) 83, 89, 116, 118, 161
BspLI GGNNCC 2 cut(s) 534, 812
BspMAI CTGCAG 1 cut(s) 364
BspOI GCTAGC 1 cut(s) 392
BspPI GGATC 5 cut(s) 473, 499, 686, 755, 763
BspQI GCTCTTC 1 cut(s) 486
BsrBI CCGCTC 1 cut(s) 808
BsrFI RCCGGY 2 cut(s) 68, 217
BssAI RCCGGY 2 cut(s) 68, 217
BssECI CCNNGG 1 cut(s) 257
BssHII GCGCGC 1 cut(s) 116
BssMI GATC 8 cut(s) 420, 478, 504, 582, 691, 755, 760, 787
BssSI CACGAG 1 cut(s) 803
Bst2BI CACGAG 1 cut(s) 803
Bst2UI CCWGG 2 cut(s) 483, 935
Bst4CI ACNGT 1 cut(s) 671
Bst6I CTCTTC 1 cut(s) 486
BstC8I GCNNGC 3 cut(s) 118, 390, 810
BstDEI CTNAG 2 cut(s) 765, 795
BstF5I GGATG 1 cut(s) 694
BstFNI CGCG 5 cut(s) 83, 89, 116, 118, 161
BstH2I RGCGCY 2 cut(s) 389, 517
BstHHI GCGC 5 cut(s) 91, 118, 120, 388, 516
BstKTI GATC 8 cut(s) 423, 481, 507, 585, 694, 758, 763, 790
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 8 cut(s) 420, 478, 504, 582, 691, 755, 760, 787
BstMCI CGRYCG 3 cut(s) 31, 87, 673
BstMWI GCNNNNNNNGC 1 cut(s) 805
BstNI CCWGG 2 cut(s) 483, 935
BstSCI CCNGG 3 cut(s) 481, 621, 933
BstSFI CTRYAG 1 cut(s) 360
BstSLI GKGCMC 1 cut(s) 814
BstUI CGCG 5 cut(s) 83, 89, 116, 118, 161
BstV1I GCAGC 2 cut(s) 558, 851
BstV2I GAAGAC 2 cut(s) 24, 471
BstX2I RGATCY 3 cut(s) 478, 504, 760
BstYI RGATCY 3 cut(s) 478, 504, 760
Bsu36I CCTNAGG 1 cut(s) 765
BsuRI GGCC 5 cut(s) 65, 175, 204, 812, 987
BtgZI GCGATG 1 cut(s) 250
BtsCI GGATG 1 cut(s) 694
BtsI GCAGTG 1 cut(s) 357
BtsIMutI CAGTG 2 cut(s) 357, 927
Cac8I GCNNGC 3 cut(s) 118, 390, 810
CaiI CAGNNNCTG 1 cut(s) 764
CfoI GCGC 5 cut(s) 91, 118, 120, 388, 516
Cfr10I RCCGGY 2 cut(s) 68, 217
Cfr13I GGNCC 5 cut(s) 203, 335, 485, 810, 811
CseI GACGC 1 cut(s) 338
CsiI ACCWGGT 1 cut(s) 933
Csp6I GTAC 1 cut(s) 293
CspAI ACCGGT 1 cut(s) 68
CspCI CAANNNNNGTGG 2 cut(s) 715, 750
CviAII CATG 1 cut(s) 947
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 2 cut(s) 765, 795
DpnI GATC 8 cut(s) 422, 480, 506, 584, 693, 757, 762, 789
DpnII GATC 8 cut(s) 420, 478, 504, 582, 691, 755, 760, 787
DrdI GACNNNNNNGTC 1 cut(s) 91
DriI GACNNNNNGTC 1 cut(s) 866
DseDI GACNNNNNNGTC 1 cut(s) 91
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 486
Eam1105I GACNNNNNGTC 1 cut(s) 866
EarI CTCTTC 1 cut(s) 486
Eco24I GRGCYC 1 cut(s) 814
Eco47I GGWCC 2 cut(s) 335, 485
Eco57I CTGAAG 1 cut(s) 884
Eco81I CCTNAGG 1 cut(s) 765
Eco88I CYCGRG 1 cut(s) 843
EcoRII CCWGG 2 cut(s) 481, 933
EcoT38I GRGCYC 1 cut(s) 814
Esp3I CGTCTC 1 cut(s) 99
FaeI CATG 1 cut(s) 950
FaiI YATR 7 cut(s) 371, 614, 642, 717, 885, 918, 948
FaqI GGGAC 1 cut(s) 926
FatI CATG 1 cut(s) 946
FauI CCCGC 1 cut(s) 801
Fnu4HI GCNGC 3 cut(s) 202, 547, 840
FokI GGATG 1 cut(s) 701
FriOI GRGCYC 1 cut(s) 814
Fsp4HI GCNGC 3 cut(s) 202, 547, 840
FspBI CTAG 1 cut(s) 389
GlaI GCGC 5 cut(s) 90, 117, 119, 387, 515
GluI GCNGC 3 cut(s) 202, 547, 840
GsuI CTGGAG 1 cut(s) 843
HaeII RGCGCY 2 cut(s) 389, 517
HaeIII GGCC 5 cut(s) 65, 175, 204, 812, 987
HapII CCGG 7 cut(s) 69, 218, 246, 409, 474, 497, 623
HgaI GACGC 1 cut(s) 338
HhaI GCGC 5 cut(s) 91, 118, 120, 388, 516
Hin1II CATG 1 cut(s) 950
Hin6I GCGC 5 cut(s) 89, 116, 118, 386, 514
HinP1I GCGC 5 cut(s) 89, 116, 118, 386, 514
HindIII AAGCTT 1 cut(s) 728
HinfI GANTC 6 cut(s) 184, 234, 253, 277, 397, 405
HpaII CCGG 7 cut(s) 69, 218, 246, 409, 474, 497, 623
HphI GGTGA 3 cut(s) 39, 232, 272
Hpy188I TCNGA 6 cut(s) 233, 258, 308, 755, 760, 872
Hpy188III TCNNGA 6 cut(s) 409, 424, 695, 764, 822, 858
Hpy99I CGWCG 6 cut(s) 26, 29, 166, 322, 332, 554
HpyAV CCTTC 4 cut(s) 109, 293, 859, 1037
HpyCH4III ACNGT 1 cut(s) 671
HpyCH4V TGCA 3 cut(s) 362, 381, 839
HpyF10VI GCNNNNNNNGC 1 cut(s) 805
HpyF3I CTNAG 2 cut(s) 765, 795
Hsp92II CATG 1 cut(s) 950
HspAI GCGC 5 cut(s) 89, 116, 118, 386, 514
Kpn2I TCCGGA 1 cut(s) 408
Kzo9I GATC 8 cut(s) 420, 478, 504, 582, 691, 755, 760, 787
LguI GCTCTTC 1 cut(s) 486
LmnI GCTCC 5 cut(s) 196, 261, 746, 824, 1001
Lsp1109I GCAGC 2 cut(s) 558, 851
LweI GCATC 3 cut(s) 273, 826, 931
MabI ACCWGGT 1 cut(s) 933
MaeI CTAG 1 cut(s) 389
MaeIII GTNAC 1 cut(s) 925
MalI GATC 8 cut(s) 422, 480, 506, 584, 693, 757, 762, 789
MbiI CCGCTC 1 cut(s) 808
MboI GATC 8 cut(s) 420, 478, 504, 582, 691, 755, 760, 787
MboII GAAGA 7 cut(s) 29, 427, 476, 503, 514, 719, 783
MfeI CAATTG 1 cut(s) 376
MflI RGATCY 3 cut(s) 478, 504, 760
MhlI GDGCHC 1 cut(s) 814
MluCI AATT 4 cut(s) 376, 427, 616, 849
MlyI GAGTC 2 cut(s) 193, 271
MmeI TCCRAC 1 cut(s) 328
MroI TCCGGA 1 cut(s) 408
MroXI GAANNNNTTC 1 cut(s) 853
MseI TTAA 1 cut(s) 1036
MslI CAYNNNNRTG 1 cut(s) 905
MspI CCGG 7 cut(s) 69, 218, 246, 409, 474, 497, 623
MspR9I CCNGG 3 cut(s) 483, 623, 935
MunI CAATTG 1 cut(s) 376
Mva1269I GAATGC 1 cut(s) 5
MvaI CCWGG 2 cut(s) 483, 935
MvnI CGCG 5 cut(s) 83, 89, 116, 118, 161
MwoI GCNNNNNNNGC 1 cut(s) 805
NciI CCSGG 1 cut(s) 623
NdeII GATC 8 cut(s) 420, 478, 504, 582, 691, 755, 760, 787
NheI GCTAGC 1 cut(s) 388
NlaIII CATG 1 cut(s) 950
NlaIV GGNNCC 2 cut(s) 534, 812
NmeAIII GCCGAG 2 cut(s) 41, 207
NmuCI GTSAC 1 cut(s) 925
OliI CACNNNNGTG 1 cut(s) 905
PaeR7I CTCGAG 1 cut(s) 843
PauI GCGCGC 1 cut(s) 116
PciSI GCTCTTC 1 cut(s) 486
PcsI WCGNNNNNNNCGW 1 cut(s) 80
PctI GAATGC 1 cut(s) 5
PdmI GAANNNNTTC 1 cut(s) 853
PfeI GAWTC 4 cut(s) 234, 253, 397, 405
PfoI TCCNGGA 1 cut(s) 481
PinAI ACCGGT 1 cut(s) 68
PkrI GCNGC 3 cut(s) 203, 548, 841
PleI GAGTC 2 cut(s) 192, 271
PpsI GAGTC 2 cut(s) 192, 271
Psp6I CCWGG 2 cut(s) 481, 933
PspGI CCWGG 2 cut(s) 481, 933
PspN4I GGNNCC 2 cut(s) 534, 812
PspOMI GGGCCC 1 cut(s) 810
PspPI GGNCC 5 cut(s) 203, 335, 485, 810, 811
PspXI VCTCGAGB 1 cut(s) 843
PstI CTGCAG 1 cut(s) 364
PstNI CAGNNNCTG 1 cut(s) 764
PsuI RGATCY 3 cut(s) 478, 504, 760
PteI GCGCGC 1 cut(s) 116
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
RseI CAYNNNNRTG 1 cut(s) 905
SapI GCTCTTC 1 cut(s) 486
SaqAI TTAA 1 cut(s) 1036
SatI GCNGC 3 cut(s) 202, 547, 840
Sau3AI GATC 8 cut(s) 420, 478, 504, 582, 691, 755, 760, 787
Sau96I GGNCC 5 cut(s) 203, 335, 485, 810, 811
SchI GAGTC 2 cut(s) 193, 271
ScrFI CCNGG 3 cut(s) 483, 623, 935
SduI GDGCHC 1 cut(s) 814
SexAI ACCWGGT 1 cut(s) 933
SfaNI GCATC 3 cut(s) 273, 826, 931
SfcI CTRYAG 1 cut(s) 360
Sfr274I CTCGAG 1 cut(s) 843
SgrAI CRCCGGYG 1 cut(s) 217
SinI GGWCC 2 cut(s) 335, 485
SlaI CTCGAG 1 cut(s) 843
SmiMI CAYNNNNRTG 1 cut(s) 905
SmlI CTYRAG 3 cut(s) 509, 725, 843
SmoI CTYRAG 3 cut(s) 509, 725, 843
Sse9I AATT 4 cut(s) 376, 427, 616, 849
SspMI CTAG 1 cut(s) 389
StyD4I CCNGG 3 cut(s) 481, 621, 933
TaaI ACNGT 1 cut(s) 671
TaqI TCGA 7 cut(s) 41, 74, 317, 327, 454, 673, 844
TasI AATT 4 cut(s) 376, 427, 616, 849
TauI GCSGC 1 cut(s) 204
TfiI GAWTC 4 cut(s) 234, 253, 397, 405
Tru1I TTAA 1 cut(s) 1036
Tru9I TTAA 1 cut(s) 1036
TscAI CASTG 2 cut(s) 364, 934
TseFI GTSAC 1 cut(s) 925
TseI GCWGC 2 cut(s) 546, 839
Tsp45I GTSAC 1 cut(s) 925
TspDTI ATGAA 3 cut(s) 368, 657, 732
TspRI CASTG 2 cut(s) 364, 934
VpaK11BI GGWCC 2 cut(s) 335, 485
XapI RAATTY 1 cut(s) 427
XhoI CTCGAG 1 cut(s) 843
XmnI GAANNNNTTC 1 cut(s) 853
XspI CTAG 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.