Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002264

Physical Location & Seq

Genomic Coordinates Reverse (-)

68738041 .. 68738899

Gene Structure 859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG396800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGTTATTATTCTCTTCTTTACGCCAAACCTTAAGTCCTAACCTAAAGCACCAAATTTCTCTCCTTTACACAGATGCAGCCGCTATGAGTATTAGCCCAACTGGACAGCAGGACCTGGAACAACTGGTGAAACTCTGTGATCCACCAACAACAGAATTAGAGGAAATCCTCATCCAGTCCACTAACGCTGCTGGTTGCAAGGTAGAAGAACCAAAGGCTTCCGATTACACGTATTATTGTAGGATTTGCGATGAGAATTGTGATCACAGCACTGAGACGTGCCCTGACAGATCTGGAAAATTTATAACAGTTTGTAGGGTTTGTGACTGTCTCCCATGTAAAAATGAGGCTGACCACAAGGAAGACCATTATGAACGGTTCTTTTTTTGTCATCTTTGTAGTACGATTGGTCAGCACTTGACTGAAATGTGCCCTGACATGGATTCCGACATGGGTGACGAGGAATGGGGTTCTGACATGGATGACGAGAACAGGGAGAAGGGTGATTTTCCGGAGAATACACACAGCGCCGCCAATGCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

20.39

Weight (kDa)

4.43

Isoelectric Point (pI)

50.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002264)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04712 FvH4_2g40191 FvH4_2g40203 FvH4_2g40210 FvH4_2g40220 FvH4_3g18081
rosa_chinensis	RchiOBHm_Chr1g0378061 RchiOBHm_Chr5g0003061 RchiOBHm_Chr5g0030501
rosa_laevigata	RLG00000031096 RLG00000031106 RLG00000031109
rosa_multiflora	Rmu_sc0000280.1_g000001 Rmu_sc0015917.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019880 Rroxscaffold_1G00019910 Rroxscaffold_1G00049800 Rroxscaffold_1G00072540 Rroxscaffold_1G00073090
rosa_rugosa	Rorug04G0396300 Rorug04G0396400 Rorug04G0396500 Rorug04G0396600 Rorug04G0401800 Rorug05G0117400 Rorug05G0334100 Rorug05G0334100
rosa_samantha	Rh5AG028100 Rh5AG028200 Rh5AG210200 Rh5AG396800 Rh5AG396900 Rh5BG028300 Rh5BG209400 Rh5BG408900 Rh5BG409100 Rh5CG027500 Rh5CG030600 Rh5CG030700 Rh5CG433600 Rh5CG433800
rosa_wichuraiana	Rw5G002290 Rw5G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	305
AccIII	TCCGGA	1 cut(s)	511
AciI	CCGC	2 cut(s)	81, 531
AclWI	GGATC	1 cut(s)	134
AcsI	RAATTY	2 cut(s)	54, 299
AfaI	GTAC	1 cut(s)	403
AfiI	CCNNNNNNNGG	1 cut(s)	439
AflII	CTTAAG	1 cut(s)	31
AflIII	ACRYGT	1 cut(s)	228
AjiI	CACGTC	1 cut(s)	279
AjnI	CCWGG	1 cut(s)	114
Alw26I	GTCTC	2 cut(s)	269, 335
AlwI	GGATC	1 cut(s)	134
AlwNI	CAGNNNCTG	1 cut(s)	115
Aor13HI	TCCGGA	1 cut(s)	511
ApeKI	GCWGC	3 cut(s)	77, 188, 539
ApoI	RAATTY	2 cut(s)	54, 299
ArsI	GACNNNNNNTTYG	2 cut(s)	19, 51
AspLEI	GCGC	1 cut(s)	530
AspS9I	GGNCC	1 cut(s)	112
AsuHPI	GGTGA	3 cut(s)	139, 467, 515
AvaII	GGWCC	1 cut(s)	112
BaeGI	GKGCMC	2 cut(s)	284, 434
BbsI	GAAGAC	1 cut(s)	369
BbvI	GCAGC	3 cut(s)	89, 175, 526
BciT130I	CCWGG	1 cut(s)	116
BclI	TGATCA	1 cut(s)	262
BcoDI	GTCTC	2 cut(s)	269, 335
BfoI	RGCGCY	1 cut(s)	531
BfrI	CTTAAG	1 cut(s)	31
BglII	AGATCT	1 cut(s)	290
BisI	GCNGC	5 cut(s)	78, 81, 189, 531, 540
BlsI	GCNGC	5 cut(s)	79, 82, 190, 532, 541
Bme1390I	CCNGG	1 cut(s)	116
Bme18I	GGWCC	1 cut(s)	112
BmgBI	CACGTC	1 cut(s)	279
BmgT120I	GGNCC	1 cut(s)	112
BmrFI	CCNGG	1 cut(s)	116
BmsI	GCATC	1 cut(s)	64
BpiI	GAAGAC	1 cut(s)	369
BsaAI	YACGTR	1 cut(s)	231
BsaWI	WCCGGW	1 cut(s)	511
Bsc4I	CCNNNNNNNGG	1 cut(s)	439
Bse1I	ACTGG	3 cut(s)	106, 129, 175
BseAI	TCCGGA	1 cut(s)	511
BseBI	CCWGG	1 cut(s)	116
BseGI	GGATG	2 cut(s)	171, 487
BseLI	CCNNNNNNNGG	1 cut(s)	439
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	3 cut(s)	106, 129, 175
BseSI	GKGCMC	2 cut(s)	284, 434
BseXI	GCAGC	3 cut(s)	89, 175, 526
BsiSI	CCGG	1 cut(s)	512
BslI	CCNNNNNNNGG	1 cut(s)	439
BsmAI	GTCTC	2 cut(s)	269, 335
BsmBI	CGTCTC	1 cut(s)	269
Bsp1286I	GDGCHC	2 cut(s)	284, 434
Bsp13I	TCCGGA	1 cut(s)	511
Bsp143I	GATC	3 cut(s)	139, 262, 290
BspACI	CCGC	2 cut(s)	81, 531
BspCNI	CTCAG	1 cut(s)	265
BspEI	TCCGGA	1 cut(s)	511
BspPI	GGATC	1 cut(s)	134
BspTI	CTTAAG	1 cut(s)	31
BsrI	ACTGG	3 cut(s)	106, 129, 175
BssMI	GATC	3 cut(s)	139, 262, 290
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	3 cut(s)	310, 329, 378
Bst6I	CTCTTC	1 cut(s)	19
BstAFI	CTTAAG	1 cut(s)	31
BstBAI	YACGTR	1 cut(s)	231
BstDEI	CTNAG	1 cut(s)	273
BstF5I	GGATG	2 cut(s)	171, 487
BstH2I	RGCGCY	1 cut(s)	531
BstHHI	GCGC	1 cut(s)	530
BstKTI	GATC	3 cut(s)	142, 265, 293
BstMAI	GTCTC	2 cut(s)	269, 335
BstMBI	GATC	3 cut(s)	139, 262, 290
BstMWI	GCNNNNNNNGC	2 cut(s)	536, 539
BstNI	CCWGG	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	114
BstSLI	GKGCMC	2 cut(s)	284, 434
BstV1I	GCAGC	3 cut(s)	89, 175, 526
BstV2I	GAAGAC	1 cut(s)	369
BstX2I	RGATCY	1 cut(s)	290
BstYI	RGATCY	1 cut(s)	290
BtgZI	GCGATG	1 cut(s)	264
BtrI	CACGTC	1 cut(s)	279
BtsCI	GGATG	2 cut(s)	171, 487
BtsIMutI	CAGTG	1 cut(s)	270
CaiI	CAGNNNCTG	1 cut(s)	115
CfoI	GCGC	1 cut(s)	530
Cfr13I	GGNCC	1 cut(s)	112
Csp6I	GTAC	1 cut(s)	402
CviAII	CATG	4 cut(s)	336, 439, 451, 478
CviJI	RGCY	4 cut(s)	80, 96, 218, 350
CviKI_1	RGCY	4 cut(s)	80, 96, 218, 350
CviQI	GTAC	1 cut(s)	402
DdeI	CTNAG	1 cut(s)	273
DpnI	GATC	3 cut(s)	141, 264, 292
DpnII	GATC	3 cut(s)	139, 262, 290
Eam1104I	CTCTTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	112
EcoO109I	RGGNCCY	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	114
Esp3I	CGTCTC	1 cut(s)	269
FaeI	CATG	4 cut(s)	339, 442, 454, 481
FaiI	YATR	8 cut(s)	86, 305, 337, 372, 440, 452, 479, 544
FatI	CATG	4 cut(s)	335, 438, 450, 477
FbaI	TGATCA	1 cut(s)	262
Fnu4HI	GCNGC	5 cut(s)	78, 81, 189, 531, 540
FokI	GGATG	2 cut(s)	158, 494
Fsp4HI	GCNGC	5 cut(s)	78, 81, 189, 531, 540
GlaI	GCGC	1 cut(s)	529
GluI	GCNGC	5 cut(s)	78, 81, 189, 531, 540
HaeII	RGCGCY	1 cut(s)	531
HapII	CCGG	1 cut(s)	512
HhaI	GCGC	1 cut(s)	530
Hin1II	CATG	4 cut(s)	339, 442, 454, 481
Hin6I	GCGC	1 cut(s)	528
HinP1I	GCGC	1 cut(s)	528
HinfI	GANTC	1 cut(s)	443
HpaII	CCGG	1 cut(s)	512
HphI	GGTGA	3 cut(s)	139, 467, 515
Hpy166II	GTNNAC	1 cut(s)	180
Hpy188I	TCNGA	3 cut(s)	223, 448, 475
Hpy188III	TCNNGA	2 cut(s)	294, 512
Hpy8I	GTNNAC	1 cut(s)	180
HpyAV	CCTTC	1 cut(s)	493
HpyCH4III	ACNGT	3 cut(s)	310, 329, 378
HpyCH4IV	ACGT	2 cut(s)	230, 278
HpyCH4V	TGCA	3 cut(s)	77, 198, 542
HpyF10VI	GCNNNNNNNGC	2 cut(s)	536, 539
HpyF3I	CTNAG	1 cut(s)	273
HpySE526I	ACGT	2 cut(s)	230, 278
Hsp92II	CATG	4 cut(s)	339, 442, 454, 481
HspAI	GCGC	1 cut(s)	528
Kpn2I	TCCGGA	1 cut(s)	511
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	3 cut(s)	139, 262, 290
Lsp1109I	GCAGC	3 cut(s)	89, 175, 526
LweI	GCATC	1 cut(s)	64
MaeII	ACGT	2 cut(s)	230, 278
MaeIII	GTNAC	2 cut(s)	323, 455
MalI	GATC	3 cut(s)	141, 264, 292
MboI	GATC	3 cut(s)	139, 262, 290
MboII	GAAGA	3 cut(s)	6, 218, 374
MflI	RGATCY	1 cut(s)	290
MhlI	GDGCHC	2 cut(s)	284, 434
MluCI	AATT	4 cut(s)	54, 155, 256, 299
MmeI	TCCRAC	1 cut(s)	471
MnlI	CCTC	4 cut(s)	154, 179, 340, 454
MroI	TCCGGA	1 cut(s)	511
MseI	TTAA	1 cut(s)	32
MspCI	CTTAAG	1 cut(s)	31
MspI	CCGG	1 cut(s)	512
MspR9I	CCNGG	1 cut(s)	116
MvaI	CCWGG	1 cut(s)	116
MwoI	GCNNNNNNNGC	2 cut(s)	536, 539
NdeII	GATC	3 cut(s)	139, 262, 290
NlaIII	CATG	4 cut(s)	339, 442, 454, 481
NmuCI	GTSAC	2 cut(s)	323, 455
PfeI	GAWTC	1 cut(s)	443
PkrI	GCNGC	5 cut(s)	79, 82, 190, 532, 541
Ppu21I	YACGTR	1 cut(s)	231
PpuMI	RGGWCCY	1 cut(s)	112
PsiI	TTATAA	1 cut(s)	305
Psp5II	RGGWCCY	1 cut(s)	112
Psp6I	CCWGG	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	114
PspPI	GGNCC	1 cut(s)	112
PspPPI	RGGWCCY	1 cut(s)	112
PstNI	CAGNNNCTG	1 cut(s)	115
PsuI	RGATCY	1 cut(s)	290
RsaI	GTAC	1 cut(s)	403
RsaNI	GTAC	1 cut(s)	402
SaqAI	TTAA	1 cut(s)	32
SatI	GCNGC	5 cut(s)	78, 81, 189, 531, 540
Sau3AI	GATC	3 cut(s)	139, 262, 290
Sau96I	GGNCC	1 cut(s)	112
ScrFI	CCNGG	1 cut(s)	116
SduI	GDGCHC	2 cut(s)	284, 434
SetI	ASST	6 cut(s)	32, 45, 117, 204, 233, 281
SfaNI	GCATC	1 cut(s)	64
SinI	GGWCC	1 cut(s)	112
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
Sse9I	AATT	4 cut(s)	54, 155, 256, 299
SsiI	CCGC	2 cut(s)	81, 531
StyD4I	CCNGG	1 cut(s)	114
TaaI	ACNGT	3 cut(s)	310, 329, 378
TaiI	ACGT	2 cut(s)	233, 281
TasI	AATT	4 cut(s)	54, 155, 256, 299
TauI	GCSGC	2 cut(s)	83, 533
TfiI	GAWTC	1 cut(s)	443
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TscAI	CASTG	1 cut(s)	277
TseFI	GTSAC	2 cut(s)	323, 455
TseI	GCWGC	3 cut(s)	77, 188, 539
Tsp45I	GTSAC	2 cut(s)	323, 455
TspDTI	ATGAA	1 cut(s)	387
TspRI	CASTG	1 cut(s)	277
Vha464I	CTTAAG	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	112
XapI	RAATTY	2 cut(s)	54, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.