Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002264

Physical Location & Seq

Genomic Coordinates Reverse (-)

66353907 .. 66354586

Gene Structure 680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG409100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGAGTATTAGCCCAACTGGACAGCAGGACCTGGAACAACTGATGAAACTCTGTGATCCTCCAACAAAAGAATTAGCGGAAATCCTCATCGAGTCCACTAACGCTGCTGAATCACAAACAGGTTGCAAGGTAGAAGAACCAAAGGCTTCCGGTTACACGTATCATTGTAGGATTTGCGATGATAATTGTGATCACAGCACTGAGACGTGCCCTGACAGATCTGGAAAATTTATAACAGTTTGTAGGGTTTGTGACTGTCTCCCATGTAAAAATGAGGCTGACCACAAGGAAGACCATTACGAAGATTTATTGTTTTGTCATCTTTGTAATACGATTGGTGAGCACTTGACTGAAATGTGCCCTGACATGGATTCCGACATGGGTGACGAGGACTGGGGTTCTGACATGGATGACGAGAACAGGGATGAGAAGGGTGATTTTCCGGAGAATACACACAGCGCCGCCAATGCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

17.65

Weight (kDa)

4.26

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002264)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04712 FvH4_2g40191 FvH4_2g40203 FvH4_2g40210 FvH4_2g40220 FvH4_3g18081
rosa_chinensis	RchiOBHm_Chr1g0378061 RchiOBHm_Chr5g0003061 RchiOBHm_Chr5g0030501
rosa_laevigata	RLG00000031096 RLG00000031106 RLG00000031109
rosa_multiflora	Rmu_sc0000280.1_g000001 Rmu_sc0015917.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019880 Rroxscaffold_1G00019910 Rroxscaffold_1G00049800 Rroxscaffold_1G00072540 Rroxscaffold_1G00073090
rosa_rugosa	Rorug04G0396300 Rorug04G0396400 Rorug04G0396500 Rorug04G0396600 Rorug04G0401800 Rorug05G0117400 Rorug05G0334100 Rorug05G0334100
rosa_samantha	Rh5AG028100 Rh5AG028200 Rh5AG210200 Rh5AG396800 Rh5AG396900 Rh5BG028300 Rh5BG209400 Rh5BG408900 Rh5BG409100 Rh5CG027500 Rh5CG030600 Rh5CG030700 Rh5CG433600 Rh5CG433800
rosa_wichuraiana	Rw5G002290 Rw5G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	233
AccIII	TCCGGA	1 cut(s)	442
AciI	CCGC	2 cut(s)	77, 462
AclWI	GGATC	1 cut(s)	50
AcsI	RAATTY	1 cut(s)	227
AfiI	CCNNNNNNNGG	1 cut(s)	367
AflIII	ACRYGT	1 cut(s)	156
AjiI	CACGTC	1 cut(s)	207
AjnI	CCWGG	1 cut(s)	30
Alw21I	GWGCWC	1 cut(s)	345
Alw26I	GTCTC	2 cut(s)	197, 263
AlwI	GGATC	1 cut(s)	50
AlwNI	CAGNNNCTG	1 cut(s)	31
Aor13HI	TCCGGA	1 cut(s)	442
ApeKI	GCWGC	2 cut(s)	104, 470
ApoI	RAATTY	1 cut(s)	227
AspLEI	GCGC	1 cut(s)	461
AspS9I	GGNCC	1 cut(s)	28
AsuHPI	GGTGA	3 cut(s)	350, 395, 446
AvaII	GGWCC	1 cut(s)	28
BaeGI	GKGCMC	2 cut(s)	212, 362
BbsI	GAAGAC	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	345
BbvI	GCAGC	2 cut(s)	91, 457
BciT130I	CCWGG	1 cut(s)	32
BclI	TGATCA	1 cut(s)	190
BcoDI	GTCTC	2 cut(s)	197, 263
BfoI	RGCGCY	1 cut(s)	462
BglII	AGATCT	1 cut(s)	218
BisI	GCNGC	3 cut(s)	105, 462, 471
BlsI	GCNGC	3 cut(s)	106, 463, 472
Bme1390I	CCNGG	1 cut(s)	32
Bme18I	GGWCC	1 cut(s)	28
BmgBI	CACGTC	1 cut(s)	207
BmgT120I	GGNCC	1 cut(s)	28
BmrFI	CCNGG	1 cut(s)	32
BmrI	ACTGGG	1 cut(s)	403
BmuI	ACTGGG	1 cut(s)	403
BpiI	GAAGAC	1 cut(s)	297
BsaAI	YACGTR	1 cut(s)	159
BsaWI	WCCGGW	2 cut(s)	149, 442
Bsc4I	CCNNNNNNNGG	1 cut(s)	367
Bse1I	ACTGG	2 cut(s)	22, 398
BseAI	TCCGGA	1 cut(s)	442
BseBI	CCWGG	1 cut(s)	32
BseGI	GGATG	2 cut(s)	415, 430
BseLI	CCNNNNNNNGG	1 cut(s)	367
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	2 cut(s)	22, 398
BseSI	GKGCMC	2 cut(s)	212, 362
BseXI	GCAGC	2 cut(s)	91, 457
BsiHKAI	GWGCWC	1 cut(s)	345
BsiSI	CCGG	2 cut(s)	150, 443
BslI	CCNNNNNNNGG	1 cut(s)	367
BsmAI	GTCTC	2 cut(s)	197, 263
BsmBI	CGTCTC	1 cut(s)	197
Bsp1286I	GDGCHC	3 cut(s)	212, 345, 362
Bsp13I	TCCGGA	1 cut(s)	442
Bsp143I	GATC	3 cut(s)	55, 190, 218
BspACI	CCGC	2 cut(s)	77, 462
BspCNI	CTCAG	1 cut(s)	193
BspEI	TCCGGA	1 cut(s)	442
BspPI	GGATC	1 cut(s)	50
BsrI	ACTGG	2 cut(s)	22, 398
BssMI	GATC	3 cut(s)	55, 190, 218
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	2 cut(s)	238, 257
BstBAI	YACGTR	1 cut(s)	159
BstDEI	CTNAG	1 cut(s)	201
BstF5I	GGATG	2 cut(s)	415, 430
BstH2I	RGCGCY	1 cut(s)	462
BstHHI	GCGC	1 cut(s)	461
BstKTI	GATC	3 cut(s)	58, 193, 221
BstMAI	GTCTC	2 cut(s)	197, 263
BstMBI	GATC	3 cut(s)	55, 190, 218
BstMWI	GCNNNNNNNGC	2 cut(s)	467, 470
BstNI	CCWGG	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	30
BstSLI	GKGCMC	2 cut(s)	212, 362
BstV1I	GCAGC	2 cut(s)	91, 457
BstV2I	GAAGAC	1 cut(s)	297
BstX2I	RGATCY	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	218
BtgZI	GCGATG	1 cut(s)	192
BtrI	CACGTC	1 cut(s)	207
BtsCI	GGATG	2 cut(s)	415, 430
BtsIMutI	CAGTG	1 cut(s)	198
CaiI	CAGNNNCTG	1 cut(s)	31
CfoI	GCGC	1 cut(s)	461
Cfr13I	GGNCC	1 cut(s)	28
CviAII	CATG	4 cut(s)	264, 367, 379, 406
CviJI	RGCY	3 cut(s)	12, 146, 278
CviKI_1	RGCY	3 cut(s)	12, 146, 278
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	3 cut(s)	57, 192, 220
DpnII	GATC	3 cut(s)	55, 190, 218
Eco47I	GGWCC	1 cut(s)	28
EcoO109I	RGGNCCY	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	30
Esp3I	CGTCTC	1 cut(s)	197
FaeI	CATG	4 cut(s)	267, 370, 382, 409
FaiI	YATR	6 cut(s)	233, 265, 368, 380, 407, 475
FatI	CATG	4 cut(s)	263, 366, 378, 405
FbaI	TGATCA	1 cut(s)	190
Fnu4HI	GCNGC	3 cut(s)	105, 462, 471
FokI	GGATG	2 cut(s)	422, 437
Fsp4HI	GCNGC	3 cut(s)	105, 462, 471
GlaI	GCGC	1 cut(s)	460
GluI	GCNGC	3 cut(s)	105, 462, 471
HaeII	RGCGCY	1 cut(s)	462
HapII	CCGG	2 cut(s)	150, 443
HhaI	GCGC	1 cut(s)	461
Hin1II	CATG	4 cut(s)	267, 370, 382, 409
Hin6I	GCGC	1 cut(s)	459
HinP1I	GCGC	1 cut(s)	459
HinfI	GANTC	3 cut(s)	92, 110, 371
HpaII	CCGG	2 cut(s)	150, 443
HphI	GGTGA	3 cut(s)	350, 395, 446
Hpy166II	GTNNAC	1 cut(s)	96
Hpy188I	TCNGA	2 cut(s)	376, 403
Hpy188III	TCNNGA	2 cut(s)	222, 443
Hpy8I	GTNNAC	1 cut(s)	96
HpyAV	CCTTC	1 cut(s)	424
HpyCH4III	ACNGT	2 cut(s)	238, 257
HpyCH4IV	ACGT	2 cut(s)	158, 206
HpyCH4V	TGCA	2 cut(s)	126, 473
HpyF10VI	GCNNNNNNNGC	2 cut(s)	467, 470
HpyF3I	CTNAG	1 cut(s)	201
HpySE526I	ACGT	2 cut(s)	158, 206
Hsp92II	CATG	4 cut(s)	267, 370, 382, 409
HspAI	GCGC	1 cut(s)	459
Kpn2I	TCCGGA	1 cut(s)	442
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	3 cut(s)	55, 190, 218
Lsp1109I	GCAGC	2 cut(s)	91, 457
MaeII	ACGT	2 cut(s)	158, 206
MaeIII	GTNAC	3 cut(s)	152, 251, 383
MalI	GATC	3 cut(s)	57, 192, 220
MboI	GATC	3 cut(s)	55, 190, 218
MboII	GAAGA	3 cut(s)	146, 302, 314
MflI	RGATCY	1 cut(s)	218
MhlI	GDGCHC	3 cut(s)	212, 345, 362
MluCI	AATT	3 cut(s)	71, 184, 227
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	2 cut(s)	86, 399
MnlI	CCTC	4 cut(s)	69, 95, 268, 382
MroI	TCCGGA	1 cut(s)	442
MspI	CCGG	2 cut(s)	150, 443
MspR9I	CCNGG	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	2 cut(s)	467, 470
NdeII	GATC	3 cut(s)	55, 190, 218
NlaIII	CATG	4 cut(s)	267, 370, 382, 409
NmuCI	GTSAC	2 cut(s)	251, 383
PfeI	GAWTC	2 cut(s)	110, 371
PkrI	GCNGC	3 cut(s)	106, 463, 472
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
Ppu21I	YACGTR	1 cut(s)	159
PpuMI	RGGWCCY	1 cut(s)	28
PsiI	TTATAA	1 cut(s)	233
Psp5II	RGGWCCY	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspPI	GGNCC	1 cut(s)	28
PspPPI	RGGWCCY	1 cut(s)	28
PstNI	CAGNNNCTG	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	218
SatI	GCNGC	3 cut(s)	105, 462, 471
Sau3AI	GATC	3 cut(s)	55, 190, 218
Sau96I	GGNCC	1 cut(s)	28
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	32
SduI	GDGCHC	3 cut(s)	212, 345, 362
SetI	ASST	5 cut(s)	33, 124, 132, 161, 209
SinI	GGWCC	1 cut(s)	28
Sse9I	AATT	3 cut(s)	71, 184, 227
SsiI	CCGC	2 cut(s)	77, 462
StyD4I	CCNGG	1 cut(s)	30
TaaI	ACNGT	2 cut(s)	238, 257
TaiI	ACGT	2 cut(s)	161, 209
TaqI	TCGA	1 cut(s)	90
TasI	AATT	3 cut(s)	71, 184, 227
TauI	GCSGC	1 cut(s)	464
TfiI	GAWTC	2 cut(s)	110, 371
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	2 cut(s)	251, 383
TseI	GCWGC	2 cut(s)	104, 470
Tsp45I	GTSAC	2 cut(s)	251, 383
TspDTI	ATGAA	1 cut(s)	59
TspRI	CASTG	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	28
XapI	RAATTY	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.