Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002264

Physical Location & Seq

Genomic Coordinates Reverse (-)

25033594 .. 25034418

Gene Structure 825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G019200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGTACAACCTCGTGCACCCTGTGATTTCCGGTATGATTACGATTTTTACATCAGGATTCCGGAGGAAGATGATCTGGAATTTTGTTGGTCTTTTCGGCTTCTTTCGAGGAAAAGAAGACACAGCCGGAGATCCTGGACCAGAAGAGCCGGAGAAGATCCTTGAGCGCCCTCAGTCTCCTGTGGAACCGCAAACAGGCAGCGACGAAGTAAAACCAAAACTTGTGTTTTGTTTGATCTGTAAAGGGAATGGCGACCACGAAACTATAAATTGTCCGGACAAATCAGAGGGATATGTAACCCTTTGTAGGATTTGTGATGACGGTCCATGTGAAAATGAGGATGATCCAGACCACATGGAAGAACATTATGAATATCTCATGCGTTGTAACTGTTGTGGAGCTATCGGTAAACACTGGGAAGACACCTGCTCTATGAATTCCAGCGACAACGATTGCGACTTTGATCCTCCTTCTTGTCTCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

161

Amino Acids

18.17

Weight (kDa)

4.5

Isoelectric Point (pI)

45.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002264)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04712 FvH4_2g40191 FvH4_2g40203 FvH4_2g40210 FvH4_2g40220 FvH4_3g18081
rosa_chinensis	RchiOBHm_Chr1g0378061 RchiOBHm_Chr5g0003061 RchiOBHm_Chr5g0030501
rosa_laevigata	RLG00000031096 RLG00000031106 RLG00000031109
rosa_multiflora	Rmu_sc0000280.1_g000001 Rmu_sc0015917.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019880 Rroxscaffold_1G00019910 Rroxscaffold_1G00049800 Rroxscaffold_1G00072540 Rroxscaffold_1G00073090
rosa_rugosa	Rorug04G0396300 Rorug04G0396400 Rorug04G0396500 Rorug04G0396600 Rorug04G0401800 Rorug05G0117400 Rorug05G0334100 Rorug05G0334100
rosa_samantha	Rh5AG028100 Rh5AG028200 Rh5AG210200 Rh5AG396800 Rh5AG396900 Rh5BG028300 Rh5BG209400 Rh5BG408900 Rh5BG409100 Rh5CG027500 Rh5CG030600 Rh5CG030700 Rh5CG433600 Rh5CG433800
rosa_wichuraiana	Rw5G002290 Rw5G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	434
Acc36I	ACCTGC	1 cut(s)	434
AccIII	TCCGGA	2 cut(s)	60, 274
AciI	CCGC	1 cut(s)	188
AclWI	GGATC	4 cut(s)	125, 151, 338, 458
AcsI	RAATTY	2 cut(s)	79, 436
AdeI	CACNNNGTG	1 cut(s)	22
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	194, 306
AjnI	CCWGG	1 cut(s)	133
AluBI	AGCT	1 cut(s)	401
AluI	AGCT	1 cut(s)	401
Alw21I	GWGCWC	1 cut(s)	18
Alw26I	GTCTC	2 cut(s)	180, 482
Alw44I	GTGCAC	1 cut(s)	14
AlwI	GGATC	4 cut(s)	125, 151, 338, 458
Aor13HI	TCCGGA	2 cut(s)	60, 274
ApaLI	GTGCAC	1 cut(s)	14
ApeKI	GCWGC	1 cut(s)	198
ApoI	RAATTY	2 cut(s)	79, 436
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	2 cut(s)	137, 323
AvaII	GGWCC	2 cut(s)	137, 323
BaeGI	GKGCMC	1 cut(s)	18
BauI	CACGAG	1 cut(s)	11
BbsI	GAAGAC	2 cut(s)	123, 426
Bbv12I	GWGCWC	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	210
BciT130I	CCWGG	1 cut(s)	135
BcoDI	GTCTC	2 cut(s)	180, 482
BfoI	RGCGCY	1 cut(s)	169
BfuAI	ACCTGC	1 cut(s)	434
BisI	GCNGC	1 cut(s)	199
BlsI	GCNGC	1 cut(s)	200
Bme1390I	CCNGG	1 cut(s)	135
Bme18I	GGWCC	2 cut(s)	137, 323
BmgT120I	GGNCC	2 cut(s)	137, 323
BmiI	GGNNCC	1 cut(s)	186
BmrFI	CCNGG	1 cut(s)	135
BmrI	ACTGGG	1 cut(s)	424
BmuI	ACTGGG	1 cut(s)	424
BpiI	GAAGAC	2 cut(s)	123, 426
BpuEI	CTTGAG	1 cut(s)	182
BsaWI	WCCGGW	3 cut(s)	29, 60, 274
Bsc4I	CCNNNNNNNGG	2 cut(s)	194, 306
Bse1I	ACTGG	1 cut(s)	419
BseAI	TCCGGA	2 cut(s)	60, 274
BseBI	CCWGG	1 cut(s)	135
BseGI	GGATG	1 cut(s)	346
BseLI	CCNNNNNNNGG	2 cut(s)	194, 306
BseMII	CTCAG	1 cut(s)	185
BseNI	ACTGG	1 cut(s)	419
BseSI	GKGCMC	1 cut(s)	18
BseXI	GCAGC	1 cut(s)	210
BsiHKAI	GWGCWC	1 cut(s)	18
BsiSI	CCGG	5 cut(s)	30, 61, 126, 149, 275
BslI	CCNNNNNNNGG	2 cut(s)	194, 306
BsmAI	GTCTC	2 cut(s)	180, 482
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp13I	TCCGGA	2 cut(s)	60, 274
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	6 cut(s)	72, 130, 156, 234, 343, 463
BspACI	CCGC	1 cut(s)	188
BspCNI	CTCAG	1 cut(s)	184
BspEI	TCCGGA	2 cut(s)	60, 274
BspLI	GGNNCC	1 cut(s)	186
BspMI	ACCTGC	1 cut(s)	434
BspPI	GGATC	4 cut(s)	125, 151, 338, 458
BspQI	GCTCTTC	1 cut(s)	138
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	419
BssMI	GATC	6 cut(s)	72, 130, 156, 234, 343, 463
BssSI	CACGAG	1 cut(s)	11
Bst2BI	CACGAG	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	135
Bst4CI	ACNGT	2 cut(s)	323, 392
Bst6I	CTCTTC	1 cut(s)	138
BstAUI	TGTACA	1 cut(s)	3
BstDEI	CTNAG	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	346
BstH2I	RGCGCY	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	6 cut(s)	75, 133, 159, 237, 346, 466
BstMAI	GTCTC	2 cut(s)	180, 482
BstMBI	GATC	6 cut(s)	72, 130, 156, 234, 343, 463
BstNI	CCWGG	1 cut(s)	135
BstSCI	CCNGG	1 cut(s)	133
BstSLI	GKGCMC	1 cut(s)	18
BstV1I	GCAGC	1 cut(s)	210
BstV2I	GAAGAC	2 cut(s)	123, 426
BstX2I	RGATCY	2 cut(s)	130, 156
BstYI	RGATCY	2 cut(s)	130, 156
BtsCI	GGATG	1 cut(s)	346
BtsIMutI	CAGTG	1 cut(s)	412
BveI	ACCTGC	1 cut(s)	434
CfoI	GCGC	1 cut(s)	168
Cfr13I	GGNCC	2 cut(s)	137, 323
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	3 cut(s)	327, 355, 379
CviJI	RGCY	4 cut(s)	99, 125, 148, 401
CviKI_1	RGCY	4 cut(s)	99, 125, 148, 401
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	6 cut(s)	74, 132, 158, 236, 345, 465
DpnII	GATC	6 cut(s)	72, 130, 156, 234, 343, 463
DraIII	CACNNNGTG	1 cut(s)	22
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
Eco47I	GGWCC	2 cut(s)	137, 323
EcoRI	GAATTC	1 cut(s)	436
EcoRII	CCWGG	1 cut(s)	133
FaeI	CATG	3 cut(s)	330, 358, 382
FaiI	YATR	8 cut(s)	35, 266, 294, 328, 356, 369, 380, 434
FatI	CATG	3 cut(s)	326, 354, 378
Fnu4HI	GCNGC	1 cut(s)	199
FokI	GGATG	1 cut(s)	353
Fsp4HI	GCNGC	1 cut(s)	199
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	1 cut(s)	199
HaeII	RGCGCY	1 cut(s)	169
HapII	CCGG	5 cut(s)	30, 61, 126, 149, 275
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	3 cut(s)	330, 358, 382
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HinfI	GANTC	1 cut(s)	57
HpaII	CCGG	5 cut(s)	30, 61, 126, 149, 275
Hpy166II	GTNNAC	2 cut(s)	16, 410
Hpy188I	TCNGA	1 cut(s)	286
Hpy188III	TCNNGA	5 cut(s)	54, 61, 76, 275, 347
Hpy8I	GTNNAC	2 cut(s)	16, 410
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	1 cut(s)	480
HpyCH4III	ACNGT	2 cut(s)	323, 392
HpyCH4V	TGCA	1 cut(s)	16
HpyF3I	CTNAG	1 cut(s)	171
Hsp92II	CATG	3 cut(s)	330, 358, 382
HspAI	GCGC	1 cut(s)	166
Kpn2I	TCCGGA	2 cut(s)	60, 274
Kzo9I	GATC	6 cut(s)	72, 130, 156, 234, 343, 463
LguI	GCTCTTC	1 cut(s)	138
LmnI	GCTCC	1 cut(s)	398
Lsp1109I	GCAGC	1 cut(s)	210
MaeIII	GTNAC	2 cut(s)	295, 386
MalI	GATC	6 cut(s)	74, 132, 158, 236, 345, 465
MboI	GATC	6 cut(s)	72, 130, 156, 234, 343, 463
MboII	GAAGA	6 cut(s)	79, 128, 155, 166, 371, 431
MflI	RGATCY	2 cut(s)	130, 156
MhlI	GDGCHC	1 cut(s)	18
MluCI	AATT	3 cut(s)	79, 268, 436
MnlI	CCTC	7 cut(s)	20, 57, 101, 180, 280, 331, 477
MroI	TCCGGA	2 cut(s)	60, 274
MspI	CCGG	5 cut(s)	30, 61, 126, 149, 275
MspR9I	CCNGG	1 cut(s)	135
MvaI	CCWGG	1 cut(s)	135
NdeII	GATC	6 cut(s)	72, 130, 156, 234, 343, 463
NlaIII	CATG	3 cut(s)	330, 358, 382
NlaIV	GGNNCC	1 cut(s)	186
PaqCI	CACCTGC	1 cut(s)	434
PciSI	GCTCTTC	1 cut(s)	138
PfeI	GAWTC	1 cut(s)	57
PfoI	TCCNGGA	1 cut(s)	133
PkrI	GCNGC	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	133
PspN4I	GGNNCC	1 cut(s)	186
PspPI	GGNCC	2 cut(s)	137, 323
PsuI	RGATCY	2 cut(s)	130, 156
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SapI	GCTCTTC	1 cut(s)	138
SatI	GCNGC	1 cut(s)	199
Sau3AI	GATC	6 cut(s)	72, 130, 156, 234, 343, 463
Sau96I	GGNCC	2 cut(s)	137, 323
ScrFI	CCNGG	1 cut(s)	135
SduI	GDGCHC	1 cut(s)	18
SetI	ASST	3 cut(s)	12, 403, 428
SinI	GGWCC	2 cut(s)	137, 323
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	3 cut(s)	79, 268, 436
SsiI	CCGC	1 cut(s)	188
StyD4I	CCNGG	1 cut(s)	133
TaaI	ACNGT	2 cut(s)	323, 392
TaqI	TCGA	1 cut(s)	106
TasI	AATT	3 cut(s)	79, 268, 436
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	1 cut(s)	57
TscAI	CASTG	1 cut(s)	419
TseI	GCWGC	1 cut(s)	198
TspDTI	ATGAA	2 cut(s)	384, 449
TspRI	CASTG	1 cut(s)	419
VneI	GTGCAC	1 cut(s)	14
VpaK11BI	GGWCC	2 cut(s)	137, 323
XapI	RAATTY	2 cut(s)	79, 436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.