Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002264

Physical Location & Seq

Genomic Coordinates Forward (+)

2173000 .. 2174596

Gene Structure 1597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031109

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGATTATTTCAAAATTTACAGAAACAGATACAGCCGCCAGCTCAAGTGGTCAGCACCAGAAGCAGGCTCAGCCGGCGAAGCTTCATGATCCTCGACCGGGAGAACTCGAGGAGATTCTCATCGCTACTGGTAGCAAGGTAGAAGAACGAGACCCTTCTGATGACAGGCATTCTAGGATTTGCGATACAAGTGGTGATCATAGTACTGAAACGTGCCCCGAAAGATCCAAGGCATATGTAGTGCTTTGTGGGATTTGTGATGATGACCCATGCCAAAATGAGGCTGACCACAAGGAAGAACATTACGAAGAACTCTTTTTTTGTTATATTTGTAACAAGGTTGGTGAGCACTGGACTGAAAATTGCCCTGACAACGATTGCGACTTTGATCCTCCCAATTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

15.11

Weight (kDa)

4.49

Isoelectric Point (pI)

46.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002264)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04712 FvH4_2g40191 FvH4_2g40203 FvH4_2g40210 FvH4_2g40220 FvH4_3g18081
rosa_chinensis	RchiOBHm_Chr1g0378061 RchiOBHm_Chr5g0003061 RchiOBHm_Chr5g0030501
rosa_laevigata	RLG00000031096 RLG00000031106 RLG00000031109
rosa_multiflora	Rmu_sc0000280.1_g000001 Rmu_sc0015917.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019880 Rroxscaffold_1G00019910 Rroxscaffold_1G00049800 Rroxscaffold_1G00072540 Rroxscaffold_1G00073090
rosa_rugosa	Rorug04G0396300 Rorug04G0396400 Rorug04G0396500 Rorug04G0396600 Rorug04G0401800 Rorug05G0117400 Rorug05G0334100 Rorug05G0334100
rosa_samantha	Rh5AG028100 Rh5AG028200 Rh5AG210200 Rh5AG396800 Rh5AG396900 Rh5BG028300 Rh5BG209400 Rh5BG408900 Rh5BG409100 Rh5CG027500 Rh5CG030600 Rh5CG030700 Rh5CG433600 Rh5CG433800
rosa_wichuraiana	Rw5G002290 Rw5G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	36
AclWI	GGATC	3 cut(s)	83, 219, 383
AcsI	RAATTY	1 cut(s)	14
AfaI	GTAC	1 cut(s)	205
AfiI	CCNNNNNNNGG	3 cut(s)	64, 98, 280
AgsI	TTSAA	1 cut(s)	12
AluBI	AGCT	2 cut(s)	42, 82
AluI	AGCT	2 cut(s)	42, 82
Alw21I	GWGCWC	1 cut(s)	351
Alw26I	GTCTC	1 cut(s)	144
AlwI	GGATC	3 cut(s)	83, 219, 383
Ama87I	CYCGRG	1 cut(s)	107
ApoI	RAATTY	1 cut(s)	14
AsuC2I	CCSGG	1 cut(s)	99
AsuHPI	GGTGA	2 cut(s)	206, 356
AvaI	CYCGRG	1 cut(s)	107
BaeGI	GKGCMC	1 cut(s)	218
Bbv12I	GWGCWC	1 cut(s)	351
BclI	TGATCA	1 cut(s)	196
BcnI	CCSGG	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	144
BfaI	CTAG	1 cut(s)	174
BisI	GCNGC	1 cut(s)	36
BlpI	GCTNAGC	1 cut(s)	69
BlsI	GCNGC	1 cut(s)	37
BmcAI	AGTACT	1 cut(s)	205
Bme1390I	CCNGG	1 cut(s)	99
BmeT110I	CYCGRG	1 cut(s)	107
BmrFI	CCNGG	1 cut(s)	99
Bpu1102I	GCTNAGC	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	28
BpuMI	CCSGG	1 cut(s)	99
BsaBI	GATNNNNATC	1 cut(s)	119
BsaI	GGTCTC	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 98, 280
Bse118I	RCCGGY	1 cut(s)	73
Bse1I	ACTGG	2 cut(s)	133, 356
Bse8I	GATNNNNATC	1 cut(s)	119
BseDI	CCNNGG	1 cut(s)	228
BseJI	GATNNNNATC	1 cut(s)	119
BseLI	CCNNNNNNNGG	3 cut(s)	64, 98, 280
BseMII	CTCAG	1 cut(s)	83
BseNI	ACTGG	2 cut(s)	133, 356
BseRI	GAGGAG	1 cut(s)	125
BseSI	GKGCMC	1 cut(s)	218
Bsh1285I	CGRYCG	1 cut(s)	98
BsiEI	CGRYCG	1 cut(s)	98
BsiHKAI	GWGCWC	1 cut(s)	351
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	2 cut(s)	74, 98
BslI	CCNNNNNNNGG	3 cut(s)	64, 98, 280
BsmAI	GTCTC	1 cut(s)	144
BsmI	GAATGC	1 cut(s)	169
Bso31I	GGTCTC	1 cut(s)	144
BsoBI	CYCGRG	1 cut(s)	107
Bsp1286I	GDGCHC	2 cut(s)	218, 351
Bsp143I	GATC	4 cut(s)	88, 196, 224, 388
Bsp1720I	GCTNAGC	1 cut(s)	69
BspACI	CCGC	1 cut(s)	36
BspCNI	CTCAG	1 cut(s)	82
BspHI	TCATGA	1 cut(s)	85
BspPI	GGATC	3 cut(s)	83, 219, 383
BspTNI	GGTCTC	1 cut(s)	144
BsrFI	RCCGGY	1 cut(s)	73
BsrI	ACTGG	2 cut(s)	133, 356
BssAI	RCCGGY	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	4 cut(s)	88, 196, 224, 388
BssT1I	CCWWGG	1 cut(s)	228
BstC8I	GCNNGC	3 cut(s)	40, 66, 75
BstDEI	CTNAG	1 cut(s)	69
BstKTI	GATC	4 cut(s)	91, 199, 227, 391
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	4 cut(s)	88, 196, 224, 388
BstMCI	CGRYCG	1 cut(s)	98
BstMWI	GCNNNNNNNGC	4 cut(s)	61, 70, 74, 79
BstSCI	CCNGG	1 cut(s)	97
BstSLI	GKGCMC	1 cut(s)	218
BstX2I	RGATCY	1 cut(s)	224
BstYI	RGATCY	1 cut(s)	224
BtgZI	GCGATG	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	349
Cac8I	GCNNGC	3 cut(s)	40, 66, 75
CciI	TCATGA	1 cut(s)	85
Cfr10I	RCCGGY	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	204
CviAII	CATG	2 cut(s)	86, 270
CviJI	RGCY	6 cut(s)	35, 42, 68, 73, 82, 284
CviKI_1	RGCY	6 cut(s)	35, 42, 68, 73, 82, 284
CviQI	GTAC	1 cut(s)	204
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	4 cut(s)	90, 198, 226, 390
DpnII	GATC	4 cut(s)	88, 196, 224, 388
Eco130I	CCWWGG	1 cut(s)	228
Eco31I	GGTCTC	1 cut(s)	144
Eco88I	CYCGRG	1 cut(s)	107
EcoT14I	CCWWGG	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	2 cut(s)	89, 273
FaiI	YATR	6 cut(s)	87, 201, 235, 237, 271, 327
FatI	CATG	2 cut(s)	85, 269
FauNDI	CATATG	1 cut(s)	235
FbaI	TGATCA	1 cut(s)	196
Fnu4HI	GCNGC	1 cut(s)	36
Fsp4HI	GCNGC	1 cut(s)	36
FspBI	CTAG	1 cut(s)	174
GluI	GCNGC	1 cut(s)	36
HapII	CCGG	2 cut(s)	74, 98
Hin1II	CATG	2 cut(s)	89, 273
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	1 cut(s)	115
HpaII	CCGG	2 cut(s)	74, 98
HphI	GGTGA	2 cut(s)	206, 356
Hpy188I	TCNGA	1 cut(s)	160
Hpy188III	TCNNGA	1 cut(s)	86
HpyAV	CCTTC	1 cut(s)	165
HpyCH4IV	ACGT	1 cut(s)	212
HpyF10VI	GCNNNNNNNGC	4 cut(s)	61, 70, 74, 79
HpyF3I	CTNAG	1 cut(s)	69
HpySE526I	ACGT	1 cut(s)	212
Hsp92II	CATG	2 cut(s)	89, 273
KroI	GCCGGC	1 cut(s)	73
KroNI	GCCGGC	1 cut(s)	75
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	4 cut(s)	88, 196, 224, 388
LpnPI	CCDG	9 cut(s)	50, 52, 71, 87, 111, 114, 151, 337, 381
MaeI	CTAG	1 cut(s)	174
MaeII	ACGT	1 cut(s)	212
MaeIII	GTNAC	1 cut(s)	332
MalI	GATC	4 cut(s)	90, 198, 226, 390
MboI	GATC	4 cut(s)	88, 196, 224, 388
MboII	GAAGA	3 cut(s)	155, 308, 320
MfeI	CAATTG	1 cut(s)	397
MflI	RGATCY	1 cut(s)	224
MhlI	GDGCHC	2 cut(s)	218, 351
MluCI	AATT	3 cut(s)	14, 361, 397
MnlI	CCTC	4 cut(s)	102, 103, 274, 402
MroNI	GCCGGC	1 cut(s)	73
MspI	CCGG	2 cut(s)	74, 98
MspR9I	CCNGG	1 cut(s)	99
MunI	CAATTG	1 cut(s)	397
Mva1269I	GAATGC	1 cut(s)	169
MwoI	GCNNNNNNNGC	4 cut(s)	61, 70, 74, 79
NaeI	GCCGGC	1 cut(s)	75
NciI	CCSGG	1 cut(s)	99
NdeI	CATATG	1 cut(s)	235
NdeII	GATC	4 cut(s)	88, 196, 224, 388
NgoMIV	GCCGGC	1 cut(s)	73
NlaIII	CATG	2 cut(s)	89, 273
PaeR7I	CTCGAG	1 cut(s)	107
PagI	TCATGA	1 cut(s)	85
PctI	GAATGC	1 cut(s)	169
PdiI	GCCGGC	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	115
PkrI	GCNGC	1 cut(s)	37
PspXI	VCTCGAGB	1 cut(s)	107
PsuI	RGATCY	1 cut(s)	224
RsaI	GTAC	1 cut(s)	205
RsaNI	GTAC	1 cut(s)	204
SatI	GCNGC	1 cut(s)	36
Sau3AI	GATC	4 cut(s)	88, 196, 224, 388
ScaI	AGTACT	1 cut(s)	205
ScrFI	CCNGG	1 cut(s)	99
SduI	GDGCHC	2 cut(s)	218, 351
SetI	ASST	5 cut(s)	44, 84, 141, 215, 342
Sfr274I	CTCGAG	1 cut(s)	107
SlaI	CTCGAG	1 cut(s)	107
SmlI	CTYRAG	2 cut(s)	43, 107
SmoI	CTYRAG	2 cut(s)	43, 107
Sse9I	AATT	3 cut(s)	14, 361, 397
SsiI	CCGC	1 cut(s)	36
SspMI	CTAG	1 cut(s)	174
StyD4I	CCNGG	1 cut(s)	97
StyI	CCWWGG	1 cut(s)	228
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	2 cut(s)	94, 108
TasI	AATT	3 cut(s)	14, 361, 397
TatI	WGTACW	1 cut(s)	203
TauI	GCSGC	1 cut(s)	38
TfiI	GAWTC	1 cut(s)	115
TscAI	CASTG	1 cut(s)	356
TspDTI	ATGAA	1 cut(s)	74
TspRI	CASTG	1 cut(s)	356
XapI	RAATTY	1 cut(s)	14
XhoI	CTCGAG	1 cut(s)	107
XspI	CTAG	1 cut(s)	174
ZrmI	AGTACT	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.