Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001540

Physical Location & Seq

Genomic Coordinates Reverse (-)

5233570 .. 5235212

Gene Structure 1643 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g06300.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGAGAGAGTGAAGAAGCTTGAGGCCAATCTAGCACCCGAGTTCCCTAGAGTGGCCAAAGTTATGTGCCTATCAAATGTCACTGGATGCTTCTGTCTTAATCTTCCAAGGAAATTTTGCTTTGAGTATTTGCCAAAGGAGGATACAATGATTGTGTTAGAAGATGAAAGTGGGAGAGAATTCCAAACCAAATATCTTGTGGGAAAGGGTGGACTTAATGCTGGATGGAGAGGATTTTCAATTTCTCACAAGTTACTAGCTGGAGATGTTGTAGTTTTCCATCGAGTTACTCCTTCCAAATTTAAGGTAACTGATGGATCAAATGGTTTAGATGAAGCGGATTGTGATCTTGGCATCAGAGAAATTGATGGTGCAAACATTATTGCATCTGGAGGTGCAAAAGTCTCCATTCCTAGTGAACCTATTCAAAAGAACACCATAGCCTGCAACACCTCAAGTGCTCCAATATCAGATCATTCTGGAAATGATGGTGAAGATTTTGGTTCTGAAGTTATGGATGGAATTAGGCTTGCAGAGTCTGTTATCCCTTTCAAAGAAGTGACAGGCATGGAAAACTTTGATGTCATCATCAATGGTTTGGTCCTAAATTCTGAGTTTTCAAAGTACCACTTGACCAAGTACTATGAGCTCTGCCGTAGTCAAAACTCATATCTTCATGAGCACATTCTTGAGTGTCTTAACTTCAAACTGGTTGCTGGAATAATTTCTGAGACAATCAATATTTCAGATGCCATAAGAGCCTGCAAGATTACTACTTCAGAGACTGACTTTTCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

267

Amino Acids

29.26

Weight (kDa)

5.15

Isoelectric Point (pI)

29.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	20 - 102	1.1e-12	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06300 FvH4_2g06310
malus_domestica	MD00G1040300.v1.1 MD05G1079100.v1.1 MD05G1079200.v1.1 MD10G1093000.v1.1 MD10G1093200.v1.1
prunus_persica	Prupe.8G122600_v2.0.a1 Prupe.8G122700_v2.0.a1 Prupe.8G122700_v2.0.a1 Prupe.8G122700_v2.0.a1 Prupe.8G122700_v2.0.a1 Prupe.8G122800_v2.0.a1 Prupe.8G122800_v2.0.a1 Prupe.8G122800_v2.0.a1 Prupe.8G122800_v2.0.a1
pyrus_communis	pycom05g07220 pycom05g07230 pycom10g07650
rosa_chinensis	RchiOBHm_Chr6g0256811 RchiOBHm_Chr6g0256821 RchiOBHm_Chr6g0256841
rosa_laevigata	RLG00000014649 RLG00000014650 RLG00000014652
rosa_multiflora	Rmu_sc0003076.1_g000020 Rmu_sc0003076.1_g000021 Rmu_sc0003076.1_g000024 Rmu_sc0022203.1_g000003
rosa_roxburghii	Rroxscaffold_7G00208200 Rroxscaffold_7G00208220
rosa_rugosa	Rorug05G0577300 Rorug05G0577500 Rorug05G0577600 Rorug05G0577700 Rorug05G0577800
rosa_samantha	Rh6AG095900 Rh6AG096100 Rh6AG096200 Rh6BG087000 Rh6BG087200 Rh6BG087300 Rh6CG083000 Rh6CG083200 Rh6CG083300 Rh6DG078900 Rh6DG079000 Rh6DG079100
rosa_wichuraiana	Rw6G008170 Rw6G008180 Rw6G008190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	338
AclWI	GGATC	1 cut(s)	325
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	4 cut(s)	113, 179, 299, 607
AcuI	CTGAAG	2 cut(s)	528, 762
AfaI	GTAC	2 cut(s)	626, 641
AfiI	CCNNNNNNNGG	1 cut(s)	52
AgsI	TTSAA	6 cut(s)	240, 428, 553, 621, 706, 795
AluBI	AGCT	3 cut(s)	19, 260, 649
AluI	AGCT	3 cut(s)	19, 260, 649
Alw21I	GWGCWC	3 cut(s)	463, 651, 684
Alw26I	GTCTC	3 cut(s)	409, 725, 776
AlwI	GGATC	1 cut(s)	325
AlwNI	CAGNNNCTG	2 cut(s)	539, 785
Ama87I	CYCGRG	1 cut(s)	38
AoxI	GGCC	2 cut(s)	24, 54
ApoI	RAATTY	4 cut(s)	113, 179, 299, 607
Asp700I	GAANNNNTTC	2 cut(s)	423, 724
AspS9I	GGNCC	1 cut(s)	601
AsuHPI	GGTGA	1 cut(s)	503
AvaI	CYCGRG	1 cut(s)	38
AvaII	GGWCC	1 cut(s)	601
BalI	TGGCCA	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	651
Bbv12I	GWGCWC	3 cut(s)	463, 651, 684
BccI	CCATC	6 cut(s)	219, 288, 308, 362, 482, 512
BceAI	ACGGC	1 cut(s)	639
BciVI	GTATCC	1 cut(s)	136
BcoDI	GTCTC	3 cut(s)	409, 725, 776
BfaI	CTAG	4 cut(s)	32, 48, 257, 414
BfuI	GTATCC	1 cut(s)	136
BmcAI	AGTACT	1 cut(s)	641
Bme18I	GGWCC	1 cut(s)	601
BmeT110I	CYCGRG	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	601
BmsI	GCATC	4 cut(s)	77, 363, 395, 739
BpmI	CTGGAG	2 cut(s)	282, 411
BpuEI	CTTGAG	3 cut(s)	41, 439, 710
BsaBI	GATNNNNATC	1 cut(s)	345
BsaJI	CCNNGG	1 cut(s)	107
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse1I	ACTGG	2 cut(s)	88, 714
Bse8I	GATNNNNATC	1 cut(s)	345
BseDI	CCNNGG	1 cut(s)	107
BseGI	GGATG	3 cut(s)	92, 230, 523
BseJI	GATNNNNATC	1 cut(s)	345
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMII	CTCAG	2 cut(s)	603, 720
BseNI	ACTGG	2 cut(s)	88, 714
BshFI	GGCC	2 cut(s)	26, 56
BsiHKAI	GWGCWC	3 cut(s)	463, 651, 684
BsiHKCI	CYCGRG	1 cut(s)	38
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmAI	GTCTC	3 cut(s)	409, 725, 776
BsnI	GGCC	2 cut(s)	26, 56
BsoBI	CYCGRG	1 cut(s)	38
Bsp1286I	GDGCHC	3 cut(s)	463, 651, 684
Bsp143I	GATC	3 cut(s)	317, 346, 472
BspACI	CCGC	1 cut(s)	338
BspANI	GGCC	2 cut(s)	26, 56
BspCNI	CTCAG	2 cut(s)	604, 721
BspHI	TCATGA	1 cut(s)	676
BspPI	GGATC	1 cut(s)	325
BsrI	ACTGG	2 cut(s)	88, 714
BssECI	CCNNGG	1 cut(s)	107
BssMI	GATC	3 cut(s)	317, 346, 472
BssT1I	CCWWGG	1 cut(s)	107
BstC8I	GCNNGC	3 cut(s)	445, 531, 763
BstDEI	CTNAG	2 cut(s)	612, 729
BstF5I	GGATG	3 cut(s)	92, 230, 523
BstKTI	GATC	3 cut(s)	320, 349, 475
BstMAI	GTCTC	3 cut(s)	409, 725, 776
BstMBI	GATC	3 cut(s)	317, 346, 472
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 758
BsuI	GTATCC	1 cut(s)	136
BsuRI	GGCC	2 cut(s)	26, 56
BtsCI	GGATG	3 cut(s)	92, 230, 523
BtsIMutI	CAGTG	1 cut(s)	81
Cac8I	GCNNGC	3 cut(s)	445, 531, 763
CaiI	CAGNNNCTG	2 cut(s)	539, 785
CciI	TCATGA	1 cut(s)	676
Cfr13I	GGNCC	1 cut(s)	601
Csp6I	GTAC	2 cut(s)	625, 640
CviAII	CATG	2 cut(s)	568, 677
CviJI	RGCY	8 cut(s)	19, 26, 56, 260, 443, 529, 649, 761
CviKI_1	RGCY	8 cut(s)	19, 26, 56, 260, 443, 529, 649, 761
CviQI	GTAC	2 cut(s)	625, 640
DdeI	CTNAG	2 cut(s)	612, 729
DpnI	GATC	3 cut(s)	319, 348, 474
DpnII	GATC	3 cut(s)	317, 346, 472
EaeI	YGGCCR	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	649
Eco130I	CCWWGG	1 cut(s)	107
Eco24I	GRGCYC	1 cut(s)	651
Eco47I	GGWCC	1 cut(s)	601
Eco53kI	GAGCTC	1 cut(s)	649
Eco57I	CTGAAG	2 cut(s)	528, 762
Eco88I	CYCGRG	1 cut(s)	38
EcoICRI	GAGCTC	1 cut(s)	649
EcoRI	GAATTC	1 cut(s)	179
EcoT14I	CCWWGG	1 cut(s)	107
EcoT38I	GRGCYC	1 cut(s)	651
ErhI	CCWWGG	1 cut(s)	107
FaeI	CATG	2 cut(s)	571, 680
FaiI	YATR	8 cut(s)	65, 440, 515, 569, 645, 670, 678, 755
FalI	AAGNNNNNCTT	2 cut(s)	614, 646
FatI	CATG	2 cut(s)	567, 676
FokI	GGATG	3 cut(s)	99, 237, 530
FriOI	GRGCYC	1 cut(s)	651
FspBI	CTAG	4 cut(s)	32, 48, 257, 414
GsuI	CTGGAG	2 cut(s)	282, 411
HaeIII	GGCC	2 cut(s)	26, 56
Hin1II	CATG	2 cut(s)	571, 680
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	1 cut(s)	536
HphI	GGTGA	1 cut(s)	503
Hpy166II	GTNNAC	2 cut(s)	212, 419
Hpy188I	TCNGA	7 cut(s)	359, 472, 508, 613, 730, 748, 781
Hpy188III	TCNNGA	4 cut(s)	390, 480, 677, 689
Hpy8I	GTNNAC	2 cut(s)	212, 419
HpyAV	CCTTC	1 cut(s)	303
HpyCH4V	TGCA	6 cut(s)	374, 386, 398, 447, 533, 765
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 758
HpyF3I	CTNAG	2 cut(s)	612, 729
Hsp92II	CATG	2 cut(s)	571, 680
Kzo9I	GATC	3 cut(s)	317, 346, 472
LmnI	GCTCC	1 cut(s)	466
LweI	GCATC	4 cut(s)	77, 363, 395, 739
MaeI	CTAG	4 cut(s)	32, 48, 257, 414
MaeIII	GTNAC	5 cut(s)	79, 252, 286, 307, 559
MalI	GATC	3 cut(s)	319, 348, 474
MboI	GATC	3 cut(s)	317, 346, 472
MboII	GAAGA	5 cut(s)	25, 95, 173, 506, 665
MhlI	GDGCHC	3 cut(s)	463, 651, 684
MlsI	TGGCCA	1 cut(s)	56
MluCI	AATT	8 cut(s)	113, 179, 240, 299, 363, 522, 607, 723
MluNI	TGGCCA	1 cut(s)	56
MlyI	GAGTC	1 cut(s)	545
MnlI	CCTC	5 cut(s)	16, 133, 224, 386, 463
Mox20I	TGGCCA	1 cut(s)	56
MroXI	GAANNNNTTC	2 cut(s)	423, 724
MscI	TGGCCA	1 cut(s)	56
MseI	TTAA	4 cut(s)	99, 216, 303, 699
Msp20I	TGGCCA	1 cut(s)	56
MwoI	GCNNNNNNNGC	2 cut(s)	32, 758
NdeII	GATC	3 cut(s)	317, 346, 472
NlaIII	CATG	2 cut(s)	571, 680
NmuCI	GTSAC	2 cut(s)	79, 559
PagI	TCATGA	1 cut(s)	676
PdmI	GAANNNNTTC	2 cut(s)	423, 724
PleI	GAGTC	1 cut(s)	544
PpsI	GAGTC	1 cut(s)	544
Psp124BI	GAGCTC	1 cut(s)	651
PspPI	GGNCC	1 cut(s)	601
PstNI	CAGNNNCTG	2 cut(s)	539, 785
RsaI	GTAC	2 cut(s)	626, 641
RsaNI	GTAC	2 cut(s)	625, 640
SacI	GAGCTC	1 cut(s)	651
SaqAI	TTAA	4 cut(s)	99, 216, 303, 699
Sau3AI	GATC	3 cut(s)	317, 346, 472
Sau96I	GGNCC	1 cut(s)	601
ScaI	AGTACT	1 cut(s)	641
SchI	GAGTC	1 cut(s)	545
SduI	GDGCHC	3 cut(s)	463, 651, 684
SetI	ASST	7 cut(s)	21, 262, 309, 397, 424, 455, 651
SfaNI	GCATC	4 cut(s)	77, 363, 395, 739
SinI	GGWCC	1 cut(s)	601
SmlI	CTYRAG	3 cut(s)	20, 454, 689
SmoI	CTYRAG	3 cut(s)	20, 454, 689
Sse9I	AATT	8 cut(s)	113, 179, 240, 299, 363, 522, 607, 723
SsiI	CCGC	1 cut(s)	338
SspI	AATATT	1 cut(s)	742
SspMI	CTAG	4 cut(s)	32, 48, 257, 414
SstI	GAGCTC	1 cut(s)	651
StyI	CCWWGG	1 cut(s)	107
TaqI	TCGA	1 cut(s)	283
TasI	AATT	8 cut(s)	113, 179, 240, 299, 363, 522, 607, 723
TatI	WGTACW	1 cut(s)	639
Tru1I	TTAA	4 cut(s)	99, 216, 303, 699
Tru9I	TTAA	4 cut(s)	99, 216, 303, 699
TscAI	CASTG	1 cut(s)	88
TseFI	GTSAC	2 cut(s)	79, 559
Tsp45I	GTSAC	2 cut(s)	79, 559
TspDTI	ATGAA	3 cut(s)	180, 348, 665
TspRI	CASTG	1 cut(s)	88
VpaK11BI	GGWCC	1 cut(s)	601
XapI	RAATTY	4 cut(s)	113, 179, 299, 607
XcmI	CCANNNNNNNNNTGG	1 cut(s)	196
XmnI	GAANNNNTTC	2 cut(s)	423, 724
XspI	CTAG	4 cut(s)	32, 48, 257, 414
ZrmI	AGTACT	1 cut(s)	641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.