Rh6AG096200

B3 domain-containing protein Os01g0234100-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001540
Physical Location & Seq
Reverse (-)
14182088 .. 14185580
3493 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG096200.1

Sequence Viewer

Length: 1053 bp
ATGCACTTAACTTGGGGTTGTCAGGGTATTCCTAGGTCGTTCTGCCGTGAGCATATGCCAAAGGATGACACAATGATTGTCTTGGAAGATGAAAATGGGGAAGAATACCAAACGAAATATCTTGTGGCGAAGGAAGGATTGAGCGGTGGATGGAGAGCATTCTCAGCTGCTCACAAGTTACTGGAGGGAGATGTTCTAGTTTTCCACAAAGTCATGCCATCAAAATTGAAGGTGTATATTGTTAGATCAACTGGTTCAGATGAAGTGGATTGCTCTCTTGGTCTTATCAAATTTGATCATGGCATTAGACGAATCAAAACTACAGAAGTTACTGCATGTGAAAGCTCAAAAAATGGGAAACTGGAACCTATTTCAGTGGAAACTCTGCATGAAAATGTTCAGAAGGAGAACACCACAGCCTGTAATACCATGTCTGGTCCAATATCAAACCAGTATCAAATAGATAGTGAAGTTCTTTATTCTGAAGTTCTGGATGGAATAAGGCTTTCAGAGTCTGTTATCCCTTTCAAAGAAGTGAGCTGCATTGAGAACTTTAAGGTCACAGTCAGTGGTTCAATCATAAATGCTGAGATCTCCGAACACCATCTGATCAAGTACTATGAGCTCTGCCGCAGTCAAAACTCATTTCTTCATGAGCATATTCTTGAGCGTCTTAACTCCAGTCTGGTTGCTGGAATAATTTCCGAGACGGTAAATCTTTCGGATGCCATTAGAGCCTGCAAGATTACTACTTCAGAGTGTGATTTTTGGACTTGGGATAGGACTCTGCAAGCTTCTGAGATGTTAGGCATGAATGTTGGGTTCTTGCGTGCCCGGCTGGACCAGCTTGCAAGCCTTGCTTCAAAATCAAAACTGTGTAAAGAGGCTAGACTTGCAAGAGACCAAGCAGTAAAGGATATGATAACCTTGGAAGCAAAGCTTGTAAGAGCCAGAGAGGTCATAAATAGGCTCAACTTTGAGATTGAGAGTCTAAATGCAAGTTCAAAGAAGCTTGAGGCTATGTTCAAAGAAGTGGCTGAGGCCCCTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

350

Amino Acids

39.41

Weight (kDa)

5.77

Isoelectric Point (pI)

33.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 8 - 83 1.4e-13 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 144
AciI CCGC 2 cut(s) 144, 631
AcsI RAATTY 1 cut(s) 290
AcuI CTGAAG 2 cut(s) 504, 738
AfaI GTAC 1 cut(s) 617
AgsI TTSAA 6 cut(s) 229, 529, 576, 864, 1005, 1027
AluBI AGCT 8 cut(s) 167, 345, 540, 625, 794, 847, 940, 1012
AluI AGCT 8 cut(s) 167, 345, 540, 625, 794, 847, 940, 1012
Alw21I GWGCWC 1 cut(s) 627
Alw26I GTCTC 2 cut(s) 701, 894
AlwNI CAGNNNCTG 1 cut(s) 515
AoxI GGCC 1 cut(s) 1041
ApeKI GCWGC 2 cut(s) 167, 540
ApoI RAATTY 1 cut(s) 290
Asp700I GAANNNNTTC 2 cut(s) 396, 700
AspA2I CCTAGG 1 cut(s) 32
AspS9I GGNCC 3 cut(s) 437, 841, 1042
AsuC2I CCSGG 1 cut(s) 835
AvaII GGWCC 2 cut(s) 437, 841
AvrII CCTAGG 1 cut(s) 32
BaeGI GKGCMC 1 cut(s) 835
BanII GRGCYC 1 cut(s) 627
Bbv12I GWGCWC 1 cut(s) 627
BbvCI CCTCAGC 1 cut(s) 1038
BbvI GCAGC 2 cut(s) 154, 527
BccI CCATC 4 cut(s) 144, 226, 488, 612
BceAI ACGGC 1 cut(s) 30
BclI TGATCA 2 cut(s) 295, 609
BcnI CCSGG 1 cut(s) 835
BcoDI GTCTC 2 cut(s) 701, 894
BfaI CTAG 3 cut(s) 33, 197, 888
BfmI CTRYAG 1 cut(s) 321
BglII AGATCT 1 cut(s) 591
BisI GCNGC 3 cut(s) 168, 541, 631
BlnI CCTAGG 1 cut(s) 32
BlsI GCNGC 3 cut(s) 169, 542, 632
BmcAI AGTACT 1 cut(s) 617
Bme1390I CCNGG 1 cut(s) 835
Bme18I GGWCC 2 cut(s) 437, 841
BmgT120I GGNCC 3 cut(s) 437, 841, 1042
BmiI GGNNCC 2 cut(s) 366, 1044
BmrFI CCNGG 1 cut(s) 835
BmsI GCATC 1 cut(s) 715
BpmI CTGGAG 2 cut(s) 203, 664
Bpu10I CCTNAGC 1 cut(s) 1038
BpuEI CTTGAG 2 cut(s) 686, 1034
BpuMI CCSGG 1 cut(s) 835
BsaI GGTCTC 1 cut(s) 894
BsaJI CCNNGG 3 cut(s) 32, 927, 1046
Bse1I ACTGG 5 cut(s) 186, 256, 366, 451, 681
BseDI CCNNGG 3 cut(s) 32, 927, 1046
BseGI GGATG 4 cut(s) 70, 155, 499, 730
BseMII CTCAG 4 cut(s) 177, 579, 789, 1029
BseNI ACTGG 5 cut(s) 186, 256, 366, 451, 681
BseSI GKGCMC 1 cut(s) 835
BseXI GCAGC 2 cut(s) 154, 527
BshFI GGCC 1 cut(s) 1043
BsiHKAI GWGCWC 1 cut(s) 627
BsiSI CCGG 1 cut(s) 835
BsmAI GTCTC 2 cut(s) 701, 894
BsmBI CGTCTC 1 cut(s) 701
BsmI GAATGC 1 cut(s) 158
BsnI GGCC 1 cut(s) 1043
Bso31I GGTCTC 1 cut(s) 894
Bsp1286I GDGCHC 2 cut(s) 627, 835
Bsp143I GATC 4 cut(s) 245, 295, 591, 609
BspACI CCGC 2 cut(s) 144, 631
BspANI GGCC 1 cut(s) 1043
BspCNI CTCAG 4 cut(s) 176, 580, 790, 1030
BspHI TCATGA 1 cut(s) 652
BspLI GGNNCC 2 cut(s) 366, 1044
BspTNI GGTCTC 1 cut(s) 894
BsrBI CCGCTC 1 cut(s) 144
BsrI ACTGG 5 cut(s) 186, 256, 366, 451, 681
BssECI CCNNGG 3 cut(s) 32, 927, 1046
BssMI GATC 4 cut(s) 245, 295, 591, 609
BssT1I CCWWGG 3 cut(s) 32, 927, 1046
Bst4CI ACNGT 3 cut(s) 565, 712, 876
BstAPI GCANNNNNTGC 1 cut(s) 857
BstC8I GCNNGC 5 cut(s) 739, 792, 831, 849, 853
BstDEI CTNAG 4 cut(s) 163, 588, 798, 1038
BstF5I GGATG 4 cut(s) 70, 155, 499, 730
BstKTI GATC 4 cut(s) 248, 298, 594, 612
BstMAI GTCTC 2 cut(s) 701, 894
BstMBI GATC 4 cut(s) 245, 295, 591, 609
BstMWI GCNNNNNNNGC 6 cut(s) 164, 734, 835, 844, 857, 893
BstNSI RCATGY 1 cut(s) 339
BstSCI CCNGG 1 cut(s) 833
BstSFI CTRYAG 1 cut(s) 321
BstSLI GKGCMC 1 cut(s) 835
BstV1I GCAGC 2 cut(s) 154, 527
BstX2I RGATCY 1 cut(s) 591
BstYI RGATCY 1 cut(s) 591
BsuRI GGCC 1 cut(s) 1043
BtsCI GGATG 4 cut(s) 70, 155, 499, 730
BtsIMutI CAGTG 2 cut(s) 381, 574
Cac8I GCNNGC 5 cut(s) 739, 792, 831, 849, 853
CaiI CAGNNNCTG 1 cut(s) 515
CciI TCATGA 1 cut(s) 652
Cfr13I GGNCC 3 cut(s) 437, 841, 1042
CseI GACGC 1 cut(s) 659
Csp6I GTAC 1 cut(s) 616
CviAII CATG 7 cut(s) 214, 299, 336, 389, 430, 653, 811
CviQI GTAC 1 cut(s) 616
DdeI CTNAG 4 cut(s) 163, 588, 798, 1038
DpnI GATC 4 cut(s) 247, 297, 593, 611
DpnII GATC 4 cut(s) 245, 295, 591, 609
Ecl136II GAGCTC 1 cut(s) 625
Eco130I CCWWGG 3 cut(s) 32, 927, 1046
Eco24I GRGCYC 1 cut(s) 627
Eco31I GGTCTC 1 cut(s) 894
Eco47I GGWCC 2 cut(s) 437, 841
Eco53kI GAGCTC 1 cut(s) 625
Eco57I CTGAAG 2 cut(s) 504, 738
EcoICRI GAGCTC 1 cut(s) 625
EcoO109I RGGNCCY 1 cut(s) 1042
EcoT14I CCWWGG 3 cut(s) 32, 927, 1046
EcoT38I GRGCYC 1 cut(s) 627
ErhI CCWWGG 3 cut(s) 32, 927, 1046
Esp3I CGTCTC 1 cut(s) 701
FaeI CATG 7 cut(s) 217, 302, 339, 392, 433, 656, 814
FalI AAGNNNNNCTT 4 cut(s) 844, 876, 924, 956
FatI CATG 7 cut(s) 213, 298, 335, 388, 429, 652, 810
FauNDI CATATG 1 cut(s) 54
FbaI TGATCA 2 cut(s) 295, 609
Fnu4HI GCNGC 3 cut(s) 168, 541, 631
FokI GGATG 4 cut(s) 77, 162, 506, 737
FriOI GRGCYC 1 cut(s) 627
Fsp4HI GCNGC 3 cut(s) 168, 541, 631
FspBI CTAG 3 cut(s) 33, 197, 888
GluI GCNGC 3 cut(s) 168, 541, 631
GsuI CTGGAG 2 cut(s) 203, 664
HaeIII GGCC 1 cut(s) 1043
HapII CCGG 1 cut(s) 835
HgaI GACGC 1 cut(s) 659
Hin1II CATG 7 cut(s) 217, 302, 339, 392, 433, 656, 814
HindIII AAGCTT 3 cut(s) 792, 938, 1010
HinfI GANTC 4 cut(s) 312, 512, 784, 988
HpaII CCGG 1 cut(s) 835
Hpy188III TCNNGA 3 cut(s) 491, 653, 665
HpyAV CCTTC 4 cut(s) 124, 128, 223, 397
HpyCH4III ACNGT 3 cut(s) 565, 712, 876
HpyCH4V TGCA 9 cut(s) 4, 335, 388, 543, 741, 790, 851, 896, 998
HpyF10VI GCNNNNNNNGC 6 cut(s) 164, 734, 835, 844, 857, 893
HpyF3I CTNAG 4 cut(s) 163, 588, 798, 1038
Hsp92II CATG 7 cut(s) 217, 302, 339, 392, 433, 656, 814
Ksp22I TGATCA 2 cut(s) 295, 609
Kzo9I GATC 4 cut(s) 245, 295, 591, 609
Lsp1109I GCAGC 2 cut(s) 154, 527
LweI GCATC 1 cut(s) 715
MaeI CTAG 3 cut(s) 33, 197, 888
MaeIII GTNAC 3 cut(s) 177, 328, 559
MalI GATC 4 cut(s) 247, 297, 593, 611
MbiI CCGCTC 1 cut(s) 144
MboI GATC 4 cut(s) 245, 295, 591, 609
MboII GAAGA 3 cut(s) 98, 113, 641
MflI RGATCY 1 cut(s) 591
MhlI GDGCHC 2 cut(s) 627, 835
MluCI AATT 3 cut(s) 224, 290, 699
MlyI GAGTC 3 cut(s) 521, 778, 997
MnlI CCTC 5 cut(s) 178, 877, 949, 1009, 1033
MroXI GAANNNNTTC 2 cut(s) 396, 700
MseI TTAA 3 cut(s) 8, 555, 675
MslI CAYNNNNRTG 1 cut(s) 393
MspA1I CMGCKG 1 cut(s) 167
MspI CCGG 1 cut(s) 835
MspR9I CCNGG 1 cut(s) 835
Mva1269I GAATGC 1 cut(s) 158
MwoI GCNNNNNNNGC 6 cut(s) 164, 734, 835, 844, 857, 893
NciI CCSGG 1 cut(s) 835
NdeI CATATG 1 cut(s) 54
NdeII GATC 4 cut(s) 245, 295, 591, 609
NlaIII CATG 7 cut(s) 217, 302, 339, 392, 433, 656, 814
NlaIV GGNNCC 2 cut(s) 366, 1044
NmuCI GTSAC 1 cut(s) 559
NspI RCATGY 1 cut(s) 339
PagI TCATGA 1 cut(s) 652
PctI GAATGC 1 cut(s) 158
PdmI GAANNNNTTC 2 cut(s) 396, 700
PfeI GAWTC 1 cut(s) 312
PkrI GCNGC 3 cut(s) 169, 542, 632
PleI GAGTC 3 cut(s) 520, 778, 996
PpsI GAGTC 3 cut(s) 520, 778, 996
Psp124BI GAGCTC 1 cut(s) 627
PspN4I GGNNCC 2 cut(s) 366, 1044
PspPI GGNCC 3 cut(s) 437, 841, 1042
PstNI CAGNNNCTG 1 cut(s) 515
PsuI RGATCY 1 cut(s) 591
PvuII CAGCTG 1 cut(s) 167
RsaI GTAC 1 cut(s) 617
RsaNI GTAC 1 cut(s) 616
RseI CAYNNNNRTG 1 cut(s) 393
SacI GAGCTC 1 cut(s) 627
SaqAI TTAA 3 cut(s) 8, 555, 675
SatI GCNGC 3 cut(s) 168, 541, 631
Sau3AI GATC 4 cut(s) 245, 295, 591, 609
Sau96I GGNCC 3 cut(s) 437, 841, 1042
ScaI AGTACT 1 cut(s) 617
SchI GAGTC 3 cut(s) 521, 778, 997
ScrFI CCNGG 1 cut(s) 835
SduI GDGCHC 2 cut(s) 627, 835
SfaNI GCATC 1 cut(s) 715
SfcI CTRYAG 1 cut(s) 321
SinI GGWCC 2 cut(s) 437, 841
SmiMI CAYNNNNRTG 1 cut(s) 393
SmlI CTYRAG 2 cut(s) 665, 1013
SmoI CTYRAG 2 cut(s) 665, 1013
Sse9I AATT 3 cut(s) 224, 290, 699
SsiI CCGC 2 cut(s) 144, 631
SspMI CTAG 3 cut(s) 33, 197, 888
SstI GAGCTC 1 cut(s) 627
StyD4I CCNGG 1 cut(s) 833
StyI CCWWGG 3 cut(s) 32, 927, 1046
TaaI ACNGT 3 cut(s) 565, 712, 876
TasI AATT 3 cut(s) 224, 290, 699
TatI WGTACW 1 cut(s) 615
TauI GCSGC 1 cut(s) 633
TfiI GAWTC 1 cut(s) 312
Tru1I TTAA 3 cut(s) 8, 555, 675
Tru9I TTAA 3 cut(s) 8, 555, 675
TscAI CASTG 2 cut(s) 381, 574
TseFI GTSAC 1 cut(s) 559
TseI GCWGC 2 cut(s) 167, 540
Tsp45I GTSAC 1 cut(s) 559
TspDTI ATGAA 5 cut(s) 105, 276, 405, 641, 827
TspRI CASTG 2 cut(s) 381, 574
VpaK11BI GGWCC 2 cut(s) 437, 841
XapI RAATTY 1 cut(s) 290
XceI RCATGY 1 cut(s) 339
XmaJI CCTAGG 1 cut(s) 32
XmnI GAANNNNTTC 2 cut(s) 396, 700
XspI CTAG 3 cut(s) 33, 197, 888
ZrmI AGTACT 1 cut(s) 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.