Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001540

Physical Location & Seq

Genomic Coordinates Forward (+)

14260102 .. 14263154

Gene Structure 3053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1093000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGACAGAGCAAAGAAGATCGAAGCAAGCCTAGACCCCAGGTTTCCTTCACTACTCAAAGTTATGATGCCGTCACAAGTTTCGGGAGGATTTTGCCTCAATCTTGCTACGAAATTTCGCAGGGAACATATGCCAAAACAAGATTCAATGATTGTTTTGGAAGATGAAAATGGGAGAGAATTTGAAACAAAATATCTTGTGGAGAAGGGTGGACTGAGTGGTGGATGGAGAGGGTTTTCAATTGCGCACAAGATAATGAAGGGAGATGCTGTGATTTTCCATCTGGTCACTCCTTTCAAATTTAAGGTGTTTATCGTTAGATCAAATGAAGTGGACTGTAATTTTCCCCTCATGAGGGTAAATCCTCCCATCAAACAGATGGATACGGGAGGTGTTACTGCACGTGGAAAGGAACGTGAGATTTTGGAGCCTATTCCGCAGGAGAATGCAATAGTCTGTTATACGGACTCTGGTCCAATATCAGATCAGTCTGAAAATGATTGTGTAGATGTTGGTTCTGAATTTCTGGATGGTCTTAGACTTTCAGAGTCAGTTGTCACTTTCAAAGAAGTGAACTGTTTGGAGAACTTCAACGTTCAGGTCAATGGTTTAATCATAAACTCTGAATTTTCGAAATACGTCTTGACCAAGTATTATGAGCTTTGCGGCAGTCAGAACTCCTTCCTTCATGGACAACTTCTGGAGGGTCTGAACTGTAAACTGATTGCAGGAGTAATTTCTGAGACAGTCAACATTGCAGATGCCATCAGGGCCTGCAAGATCACTACCCCGGAAGATTATCTTTCGACCTGGGATAAGACTCTGAAAGCCTTTGATGATTTAGGCATGAATGTTCGGTTCCTGAGTGCTCGCCTGGACCAGCTTGCAAGTCTTGCTTCAAAATCAAAAAGACCTAAGGAGGTAAATGTTTTGGAAGTAAAAGAGGCCATGGATAGTCATCTTGACTCTGAGATTGAGACTCCGAATAGGAGTCCAGAGGAGCTGGAAATTATGTTCCAAGAGGTGGCTAAAGCCCCTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

348

Amino Acids

38.97

Weight (kDa)

5.22

Isoelectric Point (pI)

37.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	19 - 107	2.8e-13	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06300 FvH4_2g06310
malus_domestica	MD00G1040300.v1.1 MD05G1079100.v1.1 MD05G1079200.v1.1 MD10G1093000.v1.1 MD10G1093200.v1.1
prunus_persica	Prupe.8G122600_v2.0.a1 Prupe.8G122700_v2.0.a1 Prupe.8G122700_v2.0.a1 Prupe.8G122700_v2.0.a1 Prupe.8G122700_v2.0.a1 Prupe.8G122800_v2.0.a1 Prupe.8G122800_v2.0.a1 Prupe.8G122800_v2.0.a1 Prupe.8G122800_v2.0.a1
pyrus_communis	pycom05g07220 pycom05g07230 pycom10g07650
rosa_chinensis	RchiOBHm_Chr6g0256811 RchiOBHm_Chr6g0256821 RchiOBHm_Chr6g0256841
rosa_laevigata	RLG00000014649 RLG00000014650 RLG00000014652
rosa_multiflora	Rmu_sc0003076.1_g000020 Rmu_sc0003076.1_g000021 Rmu_sc0003076.1_g000024 Rmu_sc0022203.1_g000003
rosa_roxburghii	Rroxscaffold_7G00208200 Rroxscaffold_7G00208220
rosa_rugosa	Rorug05G0577300 Rorug05G0577500 Rorug05G0577600 Rorug05G0577700 Rorug05G0577800
rosa_samantha	Rh6AG095900 Rh6AG096100 Rh6AG096200 Rh6BG087000 Rh6BG087200 Rh6BG087300 Rh6CG083000 Rh6CG083200 Rh6CG083300 Rh6DG078900 Rh6DG079000 Rh6DG079100
rosa_wichuraiana	Rw6G008170 Rw6G008180 Rw6G008190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	246
AccB7I	CCANNNNNTGG	1 cut(s)	1024
AciI	CCGC	2 cut(s)	437, 666
AclI	AACGTT	1 cut(s)	594
AcsI	RAATTY	5 cut(s)	113, 179, 299, 521, 626
AcvI	CACGTG	1 cut(s)	404
AfiI	CCNNNNNNNGG	3 cut(s)	354, 355, 1024
AgsI	TTSAA	7 cut(s)	147, 185, 240, 298, 565, 592, 900
AjnI	CCWGG	3 cut(s)	38, 809, 873
AjuI	GAANNNNNNNTTGG	2 cut(s)	127, 159
AloI	GAACNNNNNNTCC	2 cut(s)	998, 1030
AluBI	AGCT	3 cut(s)	661, 883, 1003
AluI	AGCT	3 cut(s)	661, 883, 1003
Alw21I	GWGCWC	1 cut(s)	871
Alw26I	GTCTC	2 cut(s)	737, 971
AlwNI	CAGNNNCTG	1 cut(s)	774
AoxI	GGCC	2 cut(s)	771, 945
ApoI	RAATTY	5 cut(s)	113, 179, 299, 521, 626
Asp700I	GAANNNNTTC	1 cut(s)	680
AspLEI	GCGC	1 cut(s)	247
AspS9I	GGNCC	3 cut(s)	473, 771, 877
AsuC2I	CCSGG	1 cut(s)	791
AsuII	TTCGAA	1 cut(s)	632
AvaII	GGWCC	2 cut(s)	473, 877
AxyI	CCTNAGG	1 cut(s)	915
BbrPI	CACGTG	1 cut(s)	404
Bbv12I	GWGCWC	1 cut(s)	871
BccI	CCATC	6 cut(s)	219, 288, 373, 377, 524, 773
BceAI	ACGGC	1 cut(s)	55
BciT130I	CCWGG	3 cut(s)	40, 811, 875
BciVI	GTATCC	1 cut(s)	376
BcnI	CCSGG	1 cut(s)	791
BcoDI	GTCTC	2 cut(s)	737, 971
BfaI	CTAG	1 cut(s)	32
BfuI	GTATCC	1 cut(s)	376
BglI	GCCNNNNNGGC	1 cut(s)	770
BisI	GCNGC	1 cut(s)	667
BlsI	GCNGC	1 cut(s)	668
Bme1390I	CCNGG	4 cut(s)	40, 791, 811, 875
Bme18I	GGWCC	2 cut(s)	473, 877
BmgT120I	GGNCC	3 cut(s)	473, 771, 877
BmiI	GGNNCC	2 cut(s)	429, 860
BmrFI	CCNGG	4 cut(s)	40, 791, 811, 875
BmsI	GCATC	3 cut(s)	57, 256, 751
BoxI	GACNNNNGTC	1 cut(s)	471
BpmI	CTGGAG	1 cut(s)	722
Bpu14I	TTCGAA	1 cut(s)	632
BpuMI	CCSGG	1 cut(s)	791
BsaAI	YACGTR	1 cut(s)	404
BsaBI	GATNNNNATC	1 cut(s)	957
BsaJI	CCNNGG	5 cut(s)	38, 789, 810, 948, 1037
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bsc4I	CCNNNNNNNGG	3 cut(s)	354, 355, 1024
Bse21I	CCTNAGG	1 cut(s)	915
Bse3DI	GCAATG	1 cut(s)	753
Bse8I	GATNNNNATC	1 cut(s)	957
BseBI	CCWGG	3 cut(s)	40, 811, 875
BseDI	CCNNGG	5 cut(s)	38, 789, 810, 948, 1037
BseGI	GGATG	2 cut(s)	230, 535
BseJI	GATNNNNATC	1 cut(s)	957
BseLI	CCNNNNNNNGG	3 cut(s)	354, 355, 1024
BseMI	GCAATG	1 cut(s)	753
BseMII	CTCAG	4 cut(s)	206, 732, 854, 960
BseRI	GAGGAG	1 cut(s)	1013
BsgI	GTGCAG	1 cut(s)	384
BshFI	GGCC	2 cut(s)	773, 947
BsiHKAI	GWGCWC	1 cut(s)	871
BsiSI	CCGG	1 cut(s)	791
BslI	CCNNNNNNNGG	3 cut(s)	354, 355, 1024
BsmAI	GTCTC	2 cut(s)	737, 971
BsmI	GAATGC	1 cut(s)	451
BsnI	GGCC	2 cut(s)	773, 947
Bsp119I	TTCGAA	1 cut(s)	632
Bsp1286I	GDGCHC	1 cut(s)	871
Bsp143I	GATC	4 cut(s)	18, 320, 484, 780
Bsp19I	CCATGG	1 cut(s)	948
BspACI	CCGC	2 cut(s)	437, 666
BspANI	GGCC	2 cut(s)	773, 947
BspCNI	CTCAG	4 cut(s)	207, 733, 855, 961
BspHI	TCATGA	1 cut(s)	351
BspLI	GGNNCC	2 cut(s)	429, 860
BspT104I	TTCGAA	1 cut(s)	632
BsrDI	GCAATG	1 cut(s)	753
BssECI	CCNNGG	5 cut(s)	38, 789, 810, 948, 1037
BssMI	GATC	4 cut(s)	18, 320, 484, 780
BssT1I	CCWWGG	2 cut(s)	948, 1037
Bst2UI	CCWGG	3 cut(s)	40, 811, 875
Bst4CI	ACNGT	4 cut(s)	338, 578, 716, 748
BstAPI	GCANNNNNTGC	1 cut(s)	893
BstBAI	YACGTR	1 cut(s)	404
BstBI	TTCGAA	1 cut(s)	632
BstC8I	GCNNGC	4 cut(s)	28, 775, 871, 885
BstDEI	CTNAG	6 cut(s)	215, 536, 741, 863, 915, 969
BstDSI	CCRYGG	1 cut(s)	948
BstF5I	GGATG	2 cut(s)	230, 535
BstHHI	GCGC	1 cut(s)	247
BstKTI	GATC	4 cut(s)	21, 323, 487, 783
BstMAI	GTCTC	2 cut(s)	737, 971
BstMBI	GATC	4 cut(s)	18, 320, 484, 780
BstMWI	GCNNNNNNNGC	3 cut(s)	436, 770, 893
BstNI	CCWGG	3 cut(s)	40, 811, 875
BstPAI	GACNNNNGTC	1 cut(s)	471
BstSCI	CCNGG	4 cut(s)	38, 789, 809, 873
Bsu36I	CCTNAGG	1 cut(s)	915
BsuI	GTATCC	1 cut(s)	376
BsuRI	GGCC	2 cut(s)	773, 947
BtgI	CCRYGG	1 cut(s)	948
BtsCI	GGATG	2 cut(s)	230, 535
Cac8I	GCNNGC	4 cut(s)	28, 775, 871, 885
CaiI	CAGNNNCTG	1 cut(s)	774
CciI	TCATGA	1 cut(s)	351
CfoI	GCGC	1 cut(s)	247
Cfr13I	GGNCC	3 cut(s)	473, 771, 877
CspCI	CAANNNNNGTGG	2 cut(s)	312, 347
CviAII	CATG	4 cut(s)	352, 689, 847, 949
DdeI	CTNAG	6 cut(s)	215, 536, 741, 863, 915, 969
DpnI	GATC	4 cut(s)	20, 322, 486, 782
DpnII	GATC	4 cut(s)	18, 320, 484, 780
Eco130I	CCWWGG	2 cut(s)	948, 1037
Eco47I	GGWCC	2 cut(s)	473, 877
Eco72I	CACGTG	1 cut(s)	404
Eco81I	CCTNAGG	1 cut(s)	915
EcoO109I	RGGNCCY	1 cut(s)	771
EcoRII	CCWGG	3 cut(s)	38, 809, 873
EcoT14I	CCWWGG	2 cut(s)	948, 1037
ErhI	CCWWGG	2 cut(s)	948, 1037
FaeI	CATG	4 cut(s)	355, 692, 850, 952
FalI	AAGNNNNNCTT	4 cut(s)	786, 818, 880, 912
FatI	CATG	4 cut(s)	351, 688, 846, 948
FauNDI	CATATG	1 cut(s)	129
Fnu4HI	GCNGC	1 cut(s)	667
FokI	GGATG	2 cut(s)	237, 542
Fsp4HI	GCNGC	1 cut(s)	667
FspBI	CTAG	1 cut(s)	32
FspI	TGCGCA	1 cut(s)	246
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	1 cut(s)	667
GsuI	CTGGAG	1 cut(s)	722
HaeIII	GGCC	2 cut(s)	773, 947
HapII	CCGG	1 cut(s)	791
HhaI	GCGC	1 cut(s)	247
Hin1II	CATG	4 cut(s)	355, 692, 850, 952
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HincII	GTYRAC	1 cut(s)	751
HindII	GTYRAC	1 cut(s)	751
HinfI	GANTC	7 cut(s)	143, 467, 548, 820, 965, 979, 991
HpaII	CCGG	1 cut(s)	791
Hpy166II	GTNNAC	5 cut(s)	212, 334, 574, 719, 751
Hpy188III	TCNNGA	8 cut(s)	84, 352, 527, 643, 701, 862, 962, 995
Hpy8I	GTNNAC	5 cut(s)	212, 334, 574, 719, 751
HpyAV	CCTTC	5 cut(s)	57, 199, 253, 691, 695
HpyCH4III	ACNGT	4 cut(s)	338, 578, 716, 748
HpyCH4IV	ACGT	4 cut(s)	403, 415, 594, 639
HpyCH4V	TGCA	6 cut(s)	401, 449, 728, 758, 777, 887
HpyF10VI	GCNNNNNNNGC	3 cut(s)	436, 770, 893
HpyF3I	CTNAG	6 cut(s)	215, 536, 741, 863, 915, 969
HpySE526I	ACGT	4 cut(s)	403, 415, 594, 639
Hsp92II	CATG	4 cut(s)	355, 692, 850, 952
HspAI	GCGC	1 cut(s)	245
Kzo9I	GATC	4 cut(s)	18, 320, 484, 780
LmnI	GCTCC	2 cut(s)	427, 1000
LweI	GCATC	3 cut(s)	57, 256, 751
MaeI	CTAG	1 cut(s)	32
MaeII	ACGT	4 cut(s)	403, 415, 594, 639
MaeIII	GTNAC	4 cut(s)	72, 286, 394, 556
MalI	GATC	4 cut(s)	20, 322, 486, 782
MboI	GATC	4 cut(s)	18, 320, 484, 780
MboII	GAAGA	3 cut(s)	28, 173, 806
MfeI	CAATTG	1 cut(s)	240
MhlI	GDGCHC	1 cut(s)	871
MluCI	AATT	9 cut(s)	113, 179, 240, 299, 340, 521, 626, 735, 1008
MlyI	GAGTC	6 cut(s)	461, 557, 814, 959, 973, 1000
MroXI	GAANNNNTTC	1 cut(s)	680
MseI	TTAA	2 cut(s)	303, 611
MspI	CCGG	1 cut(s)	791
MspR9I	CCNGG	4 cut(s)	40, 791, 811, 875
MunI	CAATTG	1 cut(s)	240
Mva1269I	GAATGC	1 cut(s)	451
MvaI	CCWGG	3 cut(s)	40, 811, 875
MwoI	GCNNNNNNNGC	3 cut(s)	436, 770, 893
NciI	CCSGG	1 cut(s)	791
NcoI	CCATGG	1 cut(s)	948
NdeI	CATATG	1 cut(s)	129
NdeII	GATC	4 cut(s)	18, 320, 484, 780
NlaIII	CATG	4 cut(s)	355, 692, 850, 952
NlaIV	GGNNCC	2 cut(s)	429, 860
NmuCI	GTSAC	3 cut(s)	72, 286, 556
NsbI	TGCGCA	1 cut(s)	246
NspV	TTCGAA	1 cut(s)	632
PagI	TCATGA	1 cut(s)	351
PctI	GAATGC	1 cut(s)	451
PdmI	GAANNNNTTC	1 cut(s)	680
PfeI	GAWTC	1 cut(s)	143
PflMI	CCANNNNNTGG	1 cut(s)	1024
PkrI	GCNGC	1 cut(s)	668
PleI	GAGTC	6 cut(s)	461, 556, 814, 959, 973, 999
PmaCI	CACGTG	1 cut(s)	404
PmlI	CACGTG	1 cut(s)	404
PpsI	GAGTC	6 cut(s)	461, 556, 814, 959, 973, 999
Ppu21I	YACGTR	1 cut(s)	404
PshAI	GACNNNNGTC	1 cut(s)	471
Psp1406I	AACGTT	1 cut(s)	594
Psp6I	CCWGG	3 cut(s)	38, 809, 873
PspCI	CACGTG	1 cut(s)	404
PspGI	CCWGG	3 cut(s)	38, 809, 873
PspN4I	GGNNCC	2 cut(s)	429, 860
PspPI	GGNCC	3 cut(s)	473, 771, 877
PstNI	CAGNNNCTG	1 cut(s)	774
SaqAI	TTAA	2 cut(s)	303, 611
SatI	GCNGC	1 cut(s)	667
Sau3AI	GATC	4 cut(s)	18, 320, 484, 780
Sau96I	GGNCC	3 cut(s)	473, 771, 877
SchI	GAGTC	6 cut(s)	461, 557, 814, 959, 973, 1000
ScrFI	CCNGG	4 cut(s)	40, 791, 811, 875
SduI	GDGCHC	1 cut(s)	871
SfaNI	GCATC	3 cut(s)	57, 256, 751
SfuI	TTCGAA	1 cut(s)	632
SinI	GGWCC	2 cut(s)	473, 877
Sse9I	AATT	9 cut(s)	113, 179, 240, 299, 340, 521, 626, 735, 1008
SsiI	CCGC	2 cut(s)	437, 666
SspMI	CTAG	1 cut(s)	32
StyD4I	CCNGG	4 cut(s)	38, 789, 809, 873
StyI	CCWWGG	2 cut(s)	948, 1037
TaaI	ACNGT	4 cut(s)	338, 578, 716, 748
TaiI	ACGT	4 cut(s)	406, 418, 597, 642
TaqI	TCGA	3 cut(s)	21, 632, 806
TasI	AATT	9 cut(s)	113, 179, 240, 299, 340, 521, 626, 735, 1008
TauI	GCSGC	1 cut(s)	669
TfiI	GAWTC	1 cut(s)	143
Tru1I	TTAA	2 cut(s)	303, 611
Tru9I	TTAA	2 cut(s)	303, 611
TseFI	GTSAC	3 cut(s)	72, 286, 556
Tsp45I	GTSAC	3 cut(s)	72, 286, 556
TspDTI	ATGAA	5 cut(s)	180, 272, 342, 677, 863
TspGWI	ACGGA	1 cut(s)	479
Van91I	CCANNNNNTGG	1 cut(s)	1024
VpaK11BI	GGWCC	2 cut(s)	473, 877
XapI	RAATTY	5 cut(s)	113, 179, 299, 521, 626
XcmI	CCANNNNNNNNNTGG	1 cut(s)	376
XmnI	GAANNNNTTC	1 cut(s)	680
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.