Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001540

Physical Location & Seq

Genomic Coordinates Reverse (-)

9094173 .. 9097665

Gene Structure 3493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG083300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGATGCCGTCACATGTTACTCGAGTCTTCTGGCTTGGTATTCCTAGGTCGTTCTGCCGTGAGCATATGCCAAAGGATGACACAATGATTGTCTTGGAAGATGAAAATGGGGAAGAATACCAAACGAAATATCTTGTGGCGAAGGAAGGATTGAGCGGTGGATGGAGAGCATTCTCAGCTGCTCACAAGTTACTGGAGGGAGATGTTCTAGTTTTCCACAAAGTCATGCCATCAAAATTGAAGGTGTATATTGTTAGATCAACTGGTTCAGATGAAGTGGATTGCTCTCTTGGTCTTATCAAATTTGATCATGGCATTAGACGAATCAAAACTACAGAAGTTACTGCATGTGAAAGCTCAAAAAATGGGAAACTGGAACCTATTTCAGTGGAAACTCTGCATGAAAATGTTCAGAAGGAGAACACCACAGCCTGTAATACCATGTCTGGTCCAATATCAAACCAGTATCAAATAGATAGTGAAGTTCTTTATTCTGAAGTTCTGGATGGAATAAGGCTTTCAGAGTCTGTTATCCCTTTCAAAGAAGTGAGCTGCATTGAGAACTTTAAGGTCACAGTCAGTGGTTCAATCATAAATGCTGAGATCTCCGAACACCATCTGATCAAGTACTATGAGCTCTGCCGCAGTCAAAACTCATTTCTTCATGAGCATATTCTTGAGCGTCTTAACTCCAGTCTGGTTGCTGGAATAATTTCCGAGACGGTAAATCTTTCGGATGCCATTAGAGCCTGCAAGATTACTACTTCAGAGTGTGATTTTTGGACTTGGGATAGGACTCTGCAAGCTTCTGAGATGTTAGGCATGAATGTTGGGTTCTTGCGTGCCCGGCTGGACCAGCTTGCAAGCCTTGCTTCAAAATCAAAACTGTGTAAAGAGGCTAGACTTGCAAGAGACCAAGCAGTAAAGGATATGATAACCTTGGAAGCAAAGCTTGTAAGAGCCAGAGAGGTCATAAATAGGCTCAACTTTGAGATTGAGAGTCTAAATGCAAGTTCAAAGAAGCTTGAGGCTATGTTCAAAGAAGTGGCTGAGGCCCCTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

354

Amino Acids

39.94

Weight (kDa)

5.88

Isoelectric Point (pI)

34.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	1 - 87	4e-16	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06300 FvH4_2g06310
malus_domestica	MD00G1040300.v1.1 MD05G1079100.v1.1 MD05G1079200.v1.1 MD10G1093000.v1.1 MD10G1093200.v1.1
prunus_persica	Prupe.8G122600_v2.0.a1 Prupe.8G122700_v2.0.a1 Prupe.8G122700_v2.0.a1 Prupe.8G122700_v2.0.a1 Prupe.8G122700_v2.0.a1 Prupe.8G122800_v2.0.a1 Prupe.8G122800_v2.0.a1 Prupe.8G122800_v2.0.a1 Prupe.8G122800_v2.0.a1
pyrus_communis	pycom05g07220 pycom05g07230 pycom10g07650
rosa_chinensis	RchiOBHm_Chr6g0256811 RchiOBHm_Chr6g0256821 RchiOBHm_Chr6g0256841
rosa_laevigata	RLG00000014649 RLG00000014650 RLG00000014652
rosa_multiflora	Rmu_sc0003076.1_g000020 Rmu_sc0003076.1_g000021 Rmu_sc0003076.1_g000024 Rmu_sc0022203.1_g000003
rosa_roxburghii	Rroxscaffold_7G00208200 Rroxscaffold_7G00208220
rosa_rugosa	Rorug05G0577300 Rorug05G0577500 Rorug05G0577600 Rorug05G0577700 Rorug05G0577800
rosa_samantha	Rh6AG095900 Rh6AG096100 Rh6AG096200 Rh6BG087000 Rh6BG087200 Rh6BG087300 Rh6CG083000 Rh6CG083200 Rh6CG083300 Rh6DG078900 Rh6DG079000 Rh6DG079100
rosa_wichuraiana	Rw6G008170 Rw6G008180 Rw6G008190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	156
AciI	CCGC	2 cut(s)	156, 643
AcsI	RAATTY	1 cut(s)	302
AcuI	CTGAAG	2 cut(s)	516, 750
AfaI	GTAC	1 cut(s)	629
AflIII	ACRYGT	1 cut(s)	13
AgsI	TTSAA	6 cut(s)	241, 541, 588, 876, 1017, 1039
AluBI	AGCT	8 cut(s)	179, 357, 552, 637, 806, 859, 952, 1024
AluI	AGCT	8 cut(s)	179, 357, 552, 637, 806, 859, 952, 1024
Alw21I	GWGCWC	1 cut(s)	639
Alw26I	GTCTC	2 cut(s)	713, 906
AlwNI	CAGNNNCTG	1 cut(s)	527
Ama87I	CYCGRG	1 cut(s)	21
AoxI	GGCC	1 cut(s)	1053
ApeKI	GCWGC	2 cut(s)	179, 552
ApoI	RAATTY	1 cut(s)	302
Asp700I	GAANNNNTTC	2 cut(s)	408, 712
AspA2I	CCTAGG	1 cut(s)	44
AspS9I	GGNCC	3 cut(s)	449, 853, 1054
AsuC2I	CCSGG	1 cut(s)	847
AvaI	CYCGRG	1 cut(s)	21
AvaII	GGWCC	2 cut(s)	449, 853
AvrII	CCTAGG	1 cut(s)	44
BaeGI	GKGCMC	1 cut(s)	847
BanII	GRGCYC	1 cut(s)	639
BbsI	GAAGAC	1 cut(s)	19
Bbv12I	GWGCWC	1 cut(s)	639
BbvCI	CCTCAGC	1 cut(s)	1050
BbvI	GCAGC	2 cut(s)	166, 539
BccI	CCATC	4 cut(s)	156, 238, 500, 624
BceAI	ACGGC	1 cut(s)	42
BclI	TGATCA	2 cut(s)	307, 621
BcnI	CCSGG	1 cut(s)	847
BcoDI	GTCTC	2 cut(s)	713, 906
BfaI	CTAG	3 cut(s)	45, 209, 900
BfmI	CTRYAG	1 cut(s)	333
BglII	AGATCT	1 cut(s)	603
BisI	GCNGC	3 cut(s)	180, 553, 643
BlnI	CCTAGG	1 cut(s)	44
BlsI	GCNGC	3 cut(s)	181, 554, 644
BmcAI	AGTACT	1 cut(s)	629
Bme1390I	CCNGG	1 cut(s)	847
Bme18I	GGWCC	2 cut(s)	449, 853
BmeT110I	CYCGRG	1 cut(s)	21
BmgT120I	GGNCC	3 cut(s)	449, 853, 1054
BmiI	GGNNCC	2 cut(s)	378, 1056
BmrFI	CCNGG	1 cut(s)	847
BmsI	GCATC	1 cut(s)	727
BpiI	GAAGAC	1 cut(s)	19
BpmI	CTGGAG	2 cut(s)	215, 676
Bpu10I	CCTNAGC	1 cut(s)	1050
BpuEI	CTTGAG	2 cut(s)	698, 1046
BpuMI	CCSGG	1 cut(s)	847
BsaI	GGTCTC	1 cut(s)	906
BsaJI	CCNNGG	3 cut(s)	44, 939, 1058
Bse1I	ACTGG	5 cut(s)	198, 268, 378, 463, 693
BseDI	CCNNGG	3 cut(s)	44, 939, 1058
BseGI	GGATG	4 cut(s)	82, 167, 511, 742
BseMII	CTCAG	4 cut(s)	189, 591, 801, 1041
BseNI	ACTGG	5 cut(s)	198, 268, 378, 463, 693
BseSI	GKGCMC	1 cut(s)	847
BseXI	GCAGC	2 cut(s)	166, 539
BshFI	GGCC	1 cut(s)	1055
BsiHKAI	GWGCWC	1 cut(s)	639
BsiHKCI	CYCGRG	1 cut(s)	21
BsiSI	CCGG	1 cut(s)	847
BsmAI	GTCTC	2 cut(s)	713, 906
BsmBI	CGTCTC	1 cut(s)	713
BsmI	GAATGC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	1055
Bso31I	GGTCTC	1 cut(s)	906
BsoBI	CYCGRG	1 cut(s)	21
Bsp1286I	GDGCHC	2 cut(s)	639, 847
Bsp143I	GATC	4 cut(s)	257, 307, 603, 621
BspACI	CCGC	2 cut(s)	156, 643
BspANI	GGCC	1 cut(s)	1055
BspCNI	CTCAG	4 cut(s)	188, 592, 802, 1042
BspHI	TCATGA	1 cut(s)	664
BspLI	GGNNCC	2 cut(s)	378, 1056
BspTNI	GGTCTC	1 cut(s)	906
BsrBI	CCGCTC	1 cut(s)	156
BsrI	ACTGG	5 cut(s)	198, 268, 378, 463, 693
BssECI	CCNNGG	3 cut(s)	44, 939, 1058
BssMI	GATC	4 cut(s)	257, 307, 603, 621
BssT1I	CCWWGG	3 cut(s)	44, 939, 1058
Bst4CI	ACNGT	3 cut(s)	577, 724, 888
BstAPI	GCANNNNNTGC	1 cut(s)	869
BstC8I	GCNNGC	5 cut(s)	751, 804, 843, 861, 865
BstDEI	CTNAG	4 cut(s)	175, 600, 810, 1050
BstF5I	GGATG	4 cut(s)	82, 167, 511, 742
BstKTI	GATC	4 cut(s)	260, 310, 606, 624
BstMAI	GTCTC	2 cut(s)	713, 906
BstMBI	GATC	4 cut(s)	257, 307, 603, 621
BstMWI	GCNNNNNNNGC	6 cut(s)	176, 746, 847, 856, 869, 905
BstNSI	RCATGY	2 cut(s)	17, 351
BstSCI	CCNGG	1 cut(s)	845
BstSFI	CTRYAG	1 cut(s)	333
BstSLI	GKGCMC	1 cut(s)	847
BstV1I	GCAGC	2 cut(s)	166, 539
BstV2I	GAAGAC	1 cut(s)	19
BstX2I	RGATCY	1 cut(s)	603
BstYI	RGATCY	1 cut(s)	603
BsuRI	GGCC	1 cut(s)	1055
BtsCI	GGATG	4 cut(s)	82, 167, 511, 742
BtsIMutI	CAGTG	2 cut(s)	393, 586
Cac8I	GCNNGC	5 cut(s)	751, 804, 843, 861, 865
CaiI	CAGNNNCTG	1 cut(s)	527
CciI	TCATGA	1 cut(s)	664
Cfr13I	GGNCC	3 cut(s)	449, 853, 1054
CseI	GACGC	1 cut(s)	671
Csp6I	GTAC	1 cut(s)	628
CviAII	CATG	8 cut(s)	14, 226, 311, 348, 401, 442, 665, 823
CviQI	GTAC	1 cut(s)	628
DdeI	CTNAG	4 cut(s)	175, 600, 810, 1050
DpnI	GATC	4 cut(s)	259, 309, 605, 623
DpnII	GATC	4 cut(s)	257, 307, 603, 621
Ecl136II	GAGCTC	1 cut(s)	637
Eco130I	CCWWGG	3 cut(s)	44, 939, 1058
Eco24I	GRGCYC	1 cut(s)	639
Eco31I	GGTCTC	1 cut(s)	906
Eco47I	GGWCC	2 cut(s)	449, 853
Eco53kI	GAGCTC	1 cut(s)	637
Eco57I	CTGAAG	2 cut(s)	516, 750
Eco88I	CYCGRG	1 cut(s)	21
EcoICRI	GAGCTC	1 cut(s)	637
EcoO109I	RGGNCCY	1 cut(s)	1054
EcoT14I	CCWWGG	3 cut(s)	44, 939, 1058
EcoT38I	GRGCYC	1 cut(s)	639
ErhI	CCWWGG	3 cut(s)	44, 939, 1058
Esp3I	CGTCTC	1 cut(s)	713
FaeI	CATG	8 cut(s)	17, 229, 314, 351, 404, 445, 668, 826
FalI	AAGNNNNNCTT	4 cut(s)	856, 888, 936, 968
FatI	CATG	8 cut(s)	13, 225, 310, 347, 400, 441, 664, 822
FauNDI	CATATG	1 cut(s)	66
FbaI	TGATCA	2 cut(s)	307, 621
Fnu4HI	GCNGC	3 cut(s)	180, 553, 643
FokI	GGATG	4 cut(s)	89, 174, 518, 749
FriOI	GRGCYC	1 cut(s)	639
Fsp4HI	GCNGC	3 cut(s)	180, 553, 643
FspBI	CTAG	3 cut(s)	45, 209, 900
GluI	GCNGC	3 cut(s)	180, 553, 643
GsuI	CTGGAG	2 cut(s)	215, 676
HaeIII	GGCC	1 cut(s)	1055
HapII	CCGG	1 cut(s)	847
HgaI	GACGC	1 cut(s)	671
Hin1II	CATG	8 cut(s)	17, 229, 314, 351, 404, 445, 668, 826
HindIII	AAGCTT	3 cut(s)	804, 950, 1022
HinfI	GANTC	5 cut(s)	24, 324, 524, 796, 1000
HpaII	CCGG	1 cut(s)	847
Hpy188III	TCNNGA	3 cut(s)	503, 665, 677
HpyAV	CCTTC	4 cut(s)	136, 140, 235, 409
HpyCH4III	ACNGT	3 cut(s)	577, 724, 888
HpyCH4V	TGCA	8 cut(s)	347, 400, 555, 753, 802, 863, 908, 1010
HpyF10VI	GCNNNNNNNGC	6 cut(s)	176, 746, 847, 856, 869, 905
HpyF3I	CTNAG	4 cut(s)	175, 600, 810, 1050
Hsp92II	CATG	8 cut(s)	17, 229, 314, 351, 404, 445, 668, 826
Ksp22I	TGATCA	2 cut(s)	307, 621
Kzo9I	GATC	4 cut(s)	257, 307, 603, 621
Lsp1109I	GCAGC	2 cut(s)	166, 539
LweI	GCATC	1 cut(s)	727
MaeI	CTAG	3 cut(s)	45, 209, 900
MaeIII	GTNAC	5 cut(s)	9, 16, 189, 340, 571
MalI	GATC	4 cut(s)	259, 309, 605, 623
MbiI	CCGCTC	1 cut(s)	156
MboI	GATC	4 cut(s)	257, 307, 603, 621
MboII	GAAGA	4 cut(s)	19, 110, 125, 653
MflI	RGATCY	1 cut(s)	603
MhlI	GDGCHC	2 cut(s)	639, 847
MluCI	AATT	3 cut(s)	236, 302, 711
MlyI	GAGTC	4 cut(s)	33, 533, 790, 1009
MnlI	CCTC	5 cut(s)	190, 889, 961, 1021, 1045
MroXI	GAANNNNTTC	2 cut(s)	408, 712
MseI	TTAA	2 cut(s)	567, 687
MslI	CAYNNNNRTG	1 cut(s)	405
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	1 cut(s)	847
MspR9I	CCNGG	1 cut(s)	847
Mva1269I	GAATGC	1 cut(s)	170
MwoI	GCNNNNNNNGC	6 cut(s)	176, 746, 847, 856, 869, 905
NciI	CCSGG	1 cut(s)	847
NdeI	CATATG	1 cut(s)	66
NdeII	GATC	4 cut(s)	257, 307, 603, 621
NlaIII	CATG	8 cut(s)	17, 229, 314, 351, 404, 445, 668, 826
NlaIV	GGNNCC	2 cut(s)	378, 1056
NmuCI	GTSAC	2 cut(s)	9, 571
NspI	RCATGY	2 cut(s)	17, 351
PaeR7I	CTCGAG	1 cut(s)	21
PagI	TCATGA	1 cut(s)	664
PciI	ACATGT	1 cut(s)	13
PctI	GAATGC	1 cut(s)	170
PdmI	GAANNNNTTC	2 cut(s)	408, 712
PfeI	GAWTC	1 cut(s)	324
PkrI	GCNGC	3 cut(s)	181, 554, 644
PleI	GAGTC	4 cut(s)	32, 532, 790, 1008
PpsI	GAGTC	4 cut(s)	32, 532, 790, 1008
PscI	ACATGT	1 cut(s)	13
Psp124BI	GAGCTC	1 cut(s)	639
PspN4I	GGNNCC	2 cut(s)	378, 1056
PspPI	GGNCC	3 cut(s)	449, 853, 1054
PspXI	VCTCGAGB	1 cut(s)	21
PstNI	CAGNNNCTG	1 cut(s)	527
PsuI	RGATCY	1 cut(s)	603
PvuII	CAGCTG	1 cut(s)	179
RsaI	GTAC	1 cut(s)	629
RsaNI	GTAC	1 cut(s)	628
RseI	CAYNNNNRTG	1 cut(s)	405
SacI	GAGCTC	1 cut(s)	639
SaqAI	TTAA	2 cut(s)	567, 687
SatI	GCNGC	3 cut(s)	180, 553, 643
Sau3AI	GATC	4 cut(s)	257, 307, 603, 621
Sau96I	GGNCC	3 cut(s)	449, 853, 1054
ScaI	AGTACT	1 cut(s)	629
SchI	GAGTC	4 cut(s)	33, 533, 790, 1009
ScrFI	CCNGG	1 cut(s)	847
SduI	GDGCHC	2 cut(s)	639, 847
SfaNI	GCATC	1 cut(s)	727
SfcI	CTRYAG	1 cut(s)	333
Sfr274I	CTCGAG	1 cut(s)	21
SinI	GGWCC	2 cut(s)	449, 853
SlaI	CTCGAG	1 cut(s)	21
SmiMI	CAYNNNNRTG	1 cut(s)	405
SmlI	CTYRAG	3 cut(s)	21, 677, 1025
SmoI	CTYRAG	3 cut(s)	21, 677, 1025
Sse9I	AATT	3 cut(s)	236, 302, 711
SsiI	CCGC	2 cut(s)	156, 643
SspMI	CTAG	3 cut(s)	45, 209, 900
SstI	GAGCTC	1 cut(s)	639
StyD4I	CCNGG	1 cut(s)	845
StyI	CCWWGG	3 cut(s)	44, 939, 1058
TaaI	ACNGT	3 cut(s)	577, 724, 888
TaqI	TCGA	1 cut(s)	22
TasI	AATT	3 cut(s)	236, 302, 711
TatI	WGTACW	1 cut(s)	627
TauI	GCSGC	1 cut(s)	645
TfiI	GAWTC	1 cut(s)	324
Tru1I	TTAA	2 cut(s)	567, 687
Tru9I	TTAA	2 cut(s)	567, 687
TscAI	CASTG	2 cut(s)	393, 586
TseFI	GTSAC	2 cut(s)	9, 571
TseI	GCWGC	2 cut(s)	179, 552
Tsp45I	GTSAC	2 cut(s)	9, 571
TspDTI	ATGAA	5 cut(s)	117, 288, 417, 653, 839
TspRI	CASTG	2 cut(s)	393, 586
VpaK11BI	GGWCC	2 cut(s)	449, 853
XapI	RAATTY	1 cut(s)	302
XceI	RCATGY	2 cut(s)	17, 351
XhoI	CTCGAG	1 cut(s)	21
XmaJI	CCTAGG	1 cut(s)	44
XmnI	GAANNNNTTC	2 cut(s)	408, 712
XspI	CTAG	3 cut(s)	45, 209, 900
ZrmI	AGTACT	1 cut(s)	629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.