Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0001540

Physical Location & Seq

Genomic Coordinates Reverse (-)

6883288 .. 6885428

Gene Structure 2141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1040300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGCACTGGATCCTCAATCCTTTTACCAATAGTCGTAAACGAAACGCCCCTGTAAGAGTTACAGTAGAAAGCTTATACGATAGTTCCCAAGCTCAGTCTTCTGTTTTGGAAAGAGCAAAGAAGATCGAAGCAAGTCTAGATCATAAGTTTCCTTCACTACTCAAAGTTATGATGCCGTCAGAAGTTTCAGGAGGATTCTGCCTTAATCTTGCTAAGAAATTTCGCAGTGAATATATGCCAAAACAAGATTCAATGATTGTTTTGGAAGATGCAAAAGGGAAGGAATTTGGAAGGAAGTATCTTGTGGAGAAGGGGGGACTGAGTGGTGGATGGAGAGGGTTTTCAATTGCTCACAAGATAATGAAGGGAGATGTTGTGATTTTCCATCTAGTCACTCCTTTCAAATTTGAGGTGCTACTTCTGAATGCGTACGAGACACTCAATTCTTTTGCTACCTACTTGTTGCAGGTGTATATCGTTAGATCAAATGAAGTGGACTGGAGTCTTCCTCTTATGAGGGTAGATCCTCCCATCAGACAGATGGATATCGGTGGCTTTACTGCATGTGGAAAGGAAGAACGTGAGAATTTGGAACCTATTCCACAGGAGAATGCAATAGTCTGTTATACAGACTCTGGTCCAACATCAGATCAGTCTGAAAATGACGGCGAAGATGTTGGTTCTGAATTTCTGGATGGTCTTAGACTTTCAGAGTCTGTTGTCACTTTCAAAGAAGTTCACTGTTTGGACAACTTTCACGTTCAGTATTATGAGCTCTTCTGCAGTCAGAACTCCTTCCTTCATGAACAACTTGTCGAGGGTCTGAACTGCAAACTGACTGCCGGAGTAATTTTTGAGACAGTCAACATTGCCGATGCCATCAGGGCTTGCAAGATCACTACCCCGGAAGGTTATCTTTCGACTTGGGATAAGACTCTGAAAGCCTTTGATGATTTAGGCATGAATGTCTGTGTTCCCGCGTGCCCGCCTGGACCAGCTTACAAGTGTTGCTTCAAAATAAAAAAGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

344

Amino Acids

38.57

Weight (kDa)

5.74

Isoelectric Point (pI)

47.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	54 - 140	2.9e-11	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06300 FvH4_2g06310
malus_domestica	MD00G1040300.v1.1 MD05G1079100.v1.1 MD05G1079200.v1.1 MD10G1093000.v1.1 MD10G1093200.v1.1
prunus_persica	Prupe.8G122600_v2.0.a1 Prupe.8G122700_v2.0.a1 Prupe.8G122700_v2.0.a1 Prupe.8G122700_v2.0.a1 Prupe.8G122700_v2.0.a1 Prupe.8G122800_v2.0.a1 Prupe.8G122800_v2.0.a1 Prupe.8G122800_v2.0.a1 Prupe.8G122800_v2.0.a1
pyrus_communis	pycom05g07220 pycom05g07230 pycom10g07650
rosa_chinensis	RchiOBHm_Chr6g0256811 RchiOBHm_Chr6g0256821 RchiOBHm_Chr6g0256841
rosa_laevigata	RLG00000014649 RLG00000014650 RLG00000014652
rosa_multiflora	Rmu_sc0003076.1_g000020 Rmu_sc0003076.1_g000021 Rmu_sc0003076.1_g000024 Rmu_sc0022203.1_g000003
rosa_roxburghii	Rroxscaffold_7G00208200 Rroxscaffold_7G00208220
rosa_rugosa	Rorug05G0577300 Rorug05G0577500 Rorug05G0577600 Rorug05G0577700 Rorug05G0577800
rosa_samantha	Rh6AG095900 Rh6AG096100 Rh6AG096200 Rh6BG087000 Rh6BG087200 Rh6BG087300 Rh6CG083000 Rh6CG083200 Rh6CG083300 Rh6DG078900 Rh6DG079000 Rh6DG079100
rosa_wichuraiana	Rw6G008170 Rw6G008180 Rw6G008190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	457
Acc36I	ACCTGC	1 cut(s)	457
AccII	CGCG	1 cut(s)	980
AciI	CCGC	2 cut(s)	978, 986
AclWI	GGATC	3 cut(s)	4, 17, 518
AcsI	RAATTY	5 cut(s)	218, 284, 404, 586, 686
AfaI	GTAC	1 cut(s)	431
AgsI	TTSAA	5 cut(s)	252, 345, 403, 730, 1015
AjnI	CCWGG	1 cut(s)	988
AjuI	GAANNNNNNNTTGG	2 cut(s)	232, 264
AluBI	AGCT	4 cut(s)	72, 92, 775, 998
AluI	AGCT	4 cut(s)	72, 92, 775, 998
Alw21I	GWGCWC	1 cut(s)	777
Alw26I	GTCTC	2 cut(s)	428, 851
AlwI	GGATC	3 cut(s)	4, 17, 518
AlwNI	CAGNNNCTG	2 cut(s)	635, 716
ApoI	RAATTY	5 cut(s)	218, 284, 404, 586, 686
Asp700I	GAANNNNTTC	2 cut(s)	597, 794
AspS9I	GGNCC	2 cut(s)	638, 992
AsuC2I	CCSGG	1 cut(s)	905
AvaII	GGWCC	2 cut(s)	638, 992
BaeGI	GKGCMC	1 cut(s)	986
BamHI	GGATCC	1 cut(s)	9
BanII	GRGCYC	1 cut(s)	777
BbsI	GAAGAC	2 cut(s)	90, 497
Bbv12I	GWGCWC	1 cut(s)	777
BccI	CCATC	6 cut(s)	324, 393, 535, 539, 689, 887
BceAI	ACGGC	2 cut(s)	160, 682
BciT130I	CCWGG	1 cut(s)	990
BcnI	CCSGG	1 cut(s)	905
BcoDI	GTCTC	2 cut(s)	428, 851
BfaI	CTAG	2 cut(s)	137, 389
BfmI	CTRYAG	1 cut(s)	781
BfuAI	ACCTGC	1 cut(s)	457
BglI	GCCNNNNNGGC	1 cut(s)	884
Bme1390I	CCNGG	2 cut(s)	905, 990
Bme18I	GGWCC	2 cut(s)	638, 992
BmgT120I	GGNCC	2 cut(s)	638, 992
BmiI	GGNNCC	2 cut(s)	11, 594
BmrFI	CCNGG	2 cut(s)	905, 990
BmsI	GCATC	3 cut(s)	162, 259, 865
BoxI	GACNNNNGTC	2 cut(s)	501, 636
BpiI	GAAGAC	2 cut(s)	90, 497
BplI	GAGNNNNNCTC	2 cut(s)	493, 525
BpmI	CTGGAG	1 cut(s)	520
BpuMI	CCSGG	1 cut(s)	905
BsaBI	GATNNNNATC	1 cut(s)	545
BsaJI	CCNNGG	1 cut(s)	903
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
Bse1I	ACTGG	2 cut(s)	11, 503
Bse3DI	GCAATG	1 cut(s)	867
Bse8I	GATNNNNATC	1 cut(s)	545
BseBI	CCWGG	1 cut(s)	990
BseDI	CCNNGG	1 cut(s)	903
BseGI	GGATG	2 cut(s)	335, 700
BseJI	GATNNNNATC	1 cut(s)	545
BseMI	GCAATG	1 cut(s)	867
BseMII	CTCAG	2 cut(s)	107, 311
BseNI	ACTGG	2 cut(s)	11, 503
BseSI	GKGCMC	1 cut(s)	986
Bsh1236I	CGCG	1 cut(s)	980
BsiHKAI	GWGCWC	1 cut(s)	777
BsiSI	CCGG	2 cut(s)	843, 905
BsiWI	CGTACG	1 cut(s)	429
BslFI	GGGAC	1 cut(s)	330
BsmAI	GTCTC	2 cut(s)	428, 851
BsmFI	GGGAC	1 cut(s)	330
BsmI	GAATGC	2 cut(s)	430, 616
Bsp1286I	GDGCHC	2 cut(s)	777, 986
Bsp143I	GATC	7 cut(s)	9, 123, 139, 482, 523, 649, 894
BspACI	CCGC	2 cut(s)	978, 986
BspCNI	CTCAG	2 cut(s)	106, 312
BspFNI	CGCG	1 cut(s)	980
BspHI	TCATGA	1 cut(s)	802
BspLI	GGNNCC	2 cut(s)	11, 594
BspMAI	CTGCAG	1 cut(s)	785
BspMI	ACCTGC	1 cut(s)	457
BspPI	GGATC	3 cut(s)	4, 17, 518
BspQI	GCTCTTC	1 cut(s)	782
BsrDI	GCAATG	1 cut(s)	867
BsrI	ACTGG	2 cut(s)	11, 503
BssECI	CCNNGG	1 cut(s)	903
BssMI	GATC	7 cut(s)	9, 123, 139, 482, 523, 649, 894
Bst2UI	CCWGG	1 cut(s)	990
Bst4CI	ACNGT	3 cut(s)	64, 743, 862
Bst6I	CTCTTC	1 cut(s)	782
BstC8I	GCNNGC	3 cut(s)	889, 982, 986
BstDEI	CTNAG	4 cut(s)	93, 213, 320, 701
BstF5I	GGATG	2 cut(s)	335, 700
BstFNI	CGCG	1 cut(s)	980
BstKTI	GATC	7 cut(s)	12, 126, 142, 485, 526, 652, 897
BstMAI	GTCTC	2 cut(s)	428, 851
BstMBI	GATC	7 cut(s)	9, 123, 139, 482, 523, 649, 894
BstMWI	GCNNNNNNNGC	1 cut(s)	884
BstNI	CCWGG	1 cut(s)	990
BstNSI	RCATGY	1 cut(s)	567
BstPAI	GACNNNNGTC	2 cut(s)	501, 636
BstSCI	CCNGG	2 cut(s)	903, 988
BstSFI	CTRYAG	1 cut(s)	781
BstSLI	GKGCMC	1 cut(s)	986
BstUI	CGCG	1 cut(s)	980
BstV2I	GAAGAC	2 cut(s)	90, 497
BstX2I	RGATCY	2 cut(s)	9, 523
BstYI	RGATCY	2 cut(s)	9, 523
BtsCI	GGATG	2 cut(s)	335, 700
BtsI	GCAGTG	1 cut(s)	232
BtsIMutI	CAGTG	3 cut(s)	4, 232, 739
BveI	ACCTGC	1 cut(s)	457
Cac8I	GCNNGC	3 cut(s)	889, 982, 986
CaiI	CAGNNNCTG	2 cut(s)	635, 716
CciI	TCATGA	1 cut(s)	802
Cfr13I	GGNCC	2 cut(s)	638, 992
Csp6I	GTAC	1 cut(s)	430
CspCI	CAANNNNNGTGG	2 cut(s)	474, 509
CviAII	CATG	3 cut(s)	564, 803, 961
CviJI	RGCY	7 cut(s)	72, 92, 555, 775, 887, 944, 998
CviKI_1	RGCY	7 cut(s)	72, 92, 555, 775, 887, 944, 998
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	4 cut(s)	93, 213, 320, 701
DpnI	GATC	7 cut(s)	11, 125, 141, 484, 525, 651, 896
DpnII	GATC	7 cut(s)	9, 123, 139, 482, 523, 649, 894
Eam1104I	CTCTTC	1 cut(s)	782
EarI	CTCTTC	1 cut(s)	782
Ecl136II	GAGCTC	1 cut(s)	775
Eco24I	GRGCYC	1 cut(s)	777
Eco32I	GATATC	1 cut(s)	547
Eco47I	GGWCC	2 cut(s)	638, 992
Eco53kI	GAGCTC	1 cut(s)	775
EcoICRI	GAGCTC	1 cut(s)	775
EcoRII	CCWGG	1 cut(s)	988
EcoRV	GATATC	1 cut(s)	547
EcoT38I	GRGCYC	1 cut(s)	777
FaeI	CATG	3 cut(s)	567, 806, 964
FalI	AAGNNNNNCTT	4 cut(s)	900, 932, 995, 1027
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	3 cut(s)	563, 802, 960
FauI	CCCGC	2 cut(s)	985, 993
FokI	GGATG	2 cut(s)	342, 707
FriOI	GRGCYC	1 cut(s)	777
FspBI	CTAG	2 cut(s)	137, 389
GsuI	CTGGAG	1 cut(s)	520
HapII	CCGG	2 cut(s)	843, 905
Hin1II	CATG	3 cut(s)	567, 806, 964
HincII	GTYRAC	1 cut(s)	865
HindII	GTYRAC	1 cut(s)	865
HindIII	AAGCTT	1 cut(s)	70
HinfI	GANTC	6 cut(s)	195, 248, 502, 632, 713, 934
HpaII	CCGG	2 cut(s)	843, 905
Hpy166II	GTNNAC	4 cut(s)	38, 496, 739, 865
Hpy188III	TCNNGA	4 cut(s)	137, 189, 692, 803
Hpy8I	GTNNAC	4 cut(s)	38, 496, 739, 865
HpyAV	CCTTC	8 cut(s)	162, 274, 285, 304, 358, 805, 809, 902
HpyCH4III	ACNGT	3 cut(s)	64, 743, 862
HpyCH4IV	ACGT	2 cut(s)	580, 759
HpyCH4V	TGCA	8 cut(s)	4, 272, 466, 563, 614, 783, 831, 891
HpyF10VI	GCNNNNNNNGC	1 cut(s)	884
HpyF3I	CTNAG	4 cut(s)	93, 213, 320, 701
HpySE526I	ACGT	2 cut(s)	580, 759
Hsp92II	CATG	3 cut(s)	567, 806, 964
Kzo9I	GATC	7 cut(s)	9, 123, 139, 482, 523, 649, 894
LguI	GCTCTTC	1 cut(s)	782
LweI	GCATC	3 cut(s)	162, 259, 865
MaeI	CTAG	2 cut(s)	137, 389
MaeII	ACGT	2 cut(s)	580, 759
MaeIII	GTNAC	3 cut(s)	58, 391, 721
MalI	GATC	7 cut(s)	11, 125, 141, 484, 525, 651, 896
MboI	GATC	7 cut(s)	9, 123, 139, 482, 523, 649, 894
MboII	GAAGA	7 cut(s)	90, 133, 278, 497, 587, 683, 769
MfeI	CAATTG	1 cut(s)	345
MflI	RGATCY	2 cut(s)	9, 523
MhlI	GDGCHC	2 cut(s)	777, 986
MluCI	AATT	8 cut(s)	218, 284, 345, 404, 442, 586, 686, 849
MlyI	GAGTC	4 cut(s)	511, 626, 722, 928
MmeI	TCCRAC	1 cut(s)	665
MnlI	CCTC	8 cut(s)	23, 185, 329, 403, 510, 519, 537, 811
MroXI	GAANNNNTTC	2 cut(s)	597, 794
MseI	TTAA	1 cut(s)	204
MspI	CCGG	2 cut(s)	843, 905
MspR9I	CCNGG	2 cut(s)	905, 990
MunI	CAATTG	1 cut(s)	345
Mva1269I	GAATGC	2 cut(s)	430, 616
MvaI	CCWGG	1 cut(s)	990
MvnI	CGCG	1 cut(s)	980
MwoI	GCNNNNNNNGC	1 cut(s)	884
NciI	CCSGG	1 cut(s)	905
NdeII	GATC	7 cut(s)	9, 123, 139, 482, 523, 649, 894
NlaIII	CATG	3 cut(s)	567, 806, 964
NlaIV	GGNNCC	2 cut(s)	11, 594
NmuCI	GTSAC	2 cut(s)	391, 721
NspI	RCATGY	1 cut(s)	567
PagI	TCATGA	1 cut(s)	802
PaqCI	CACCTGC	1 cut(s)	457
PciSI	GCTCTTC	1 cut(s)	782
PctI	GAATGC	2 cut(s)	430, 616
PdmI	GAANNNNTTC	2 cut(s)	597, 794
PfeI	GAWTC	2 cut(s)	195, 248
Pfl23II	CGTACG	1 cut(s)	429
PleI	GAGTC	4 cut(s)	510, 626, 721, 928
PpsI	GAGTC	4 cut(s)	510, 626, 721, 928
PshAI	GACNNNNGTC	2 cut(s)	501, 636
Psp124BI	GAGCTC	1 cut(s)	777
Psp6I	CCWGG	1 cut(s)	988
PspGI	CCWGG	1 cut(s)	988
PspLI	CGTACG	1 cut(s)	429
PspN4I	GGNNCC	2 cut(s)	11, 594
PspPI	GGNCC	2 cut(s)	638, 992
PstI	CTGCAG	1 cut(s)	785
PstNI	CAGNNNCTG	2 cut(s)	635, 716
PsuI	RGATCY	2 cut(s)	9, 523
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
SacI	GAGCTC	1 cut(s)	777
SapI	GCTCTTC	1 cut(s)	782
SaqAI	TTAA	1 cut(s)	204
Sau3AI	GATC	7 cut(s)	9, 123, 139, 482, 523, 649, 894
Sau96I	GGNCC	2 cut(s)	638, 992
SchI	GAGTC	4 cut(s)	511, 626, 722, 928
ScrFI	CCNGG	2 cut(s)	905, 990
SduI	GDGCHC	2 cut(s)	777, 986
SfaNI	GCATC	3 cut(s)	162, 259, 865
SfcI	CTRYAG	1 cut(s)	781
SinI	GGWCC	2 cut(s)	638, 992
Sse9I	AATT	8 cut(s)	218, 284, 345, 404, 442, 586, 686, 849
SsiI	CCGC	2 cut(s)	978, 986
SspMI	CTAG	2 cut(s)	137, 389
SstI	GAGCTC	1 cut(s)	777
StyD4I	CCNGG	2 cut(s)	903, 988
TaaI	ACNGT	3 cut(s)	64, 743, 862
TaiI	ACGT	2 cut(s)	583, 762
TaqI	TCGA	3 cut(s)	126, 816, 920
TasI	AATT	8 cut(s)	218, 284, 345, 404, 442, 586, 686, 849
TfiI	GAWTC	2 cut(s)	195, 248
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	2 cut(s)	232, 746
TseFI	GTSAC	2 cut(s)	391, 721
Tsp45I	GTSAC	2 cut(s)	391, 721
TspDTI	ATGAA	5 cut(s)	377, 504, 791, 819, 977
TspRI	CASTG	2 cut(s)	232, 746
VpaK11BI	GGWCC	2 cut(s)	638, 992
XapI	RAATTY	5 cut(s)	218, 284, 404, 586, 686
XbaI	TCTAGA	1 cut(s)	136
XceI	RCATGY	1 cut(s)	567
XcmI	CCANNNNNNNNNTGG	1 cut(s)	538
XmnI	GAANNNNTTC	2 cut(s)	597, 794
XspI	CTAG	2 cut(s)	137, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.