Rh6DG078900

B3 domain-containing protein Os01g0234100-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001540
Physical Location & Seq
Reverse (-)
8992622 .. 8996039
3418 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG078900.1

Sequence Viewer

Length: 1044 bp
ATGATATCTTTATATGCTGTGCAGGGTCTTCCTAAGAAATTCTGTTGTGTGCATTTGCCAAAACATGACACGATGATTGCTTTGGAAGATGACAGTGGGGAAGAATACCAAACCAAATATCTTGCGGACAAGGTTGGACTGAGTGGTGGATGGAGAGGCTTTTCGATTGCTCACAAGTTAGTGGAGGGAGATGTGGTAGTTTTCCATCGTGTCACTCCTTCAAAGTTCAAGGTGTATATTGTTCGATCAAAGGGTTCAGATGAATCAGATTGCTCTCTTGGCCTTATGAACCTAGGTGTTTGCATTAAAGAAATGGATACTGGGGACATTACTACTTGTGAAGGGGCAGAATATGAGGATATTAGACCTATTTCAGTGGAAAATCCTCAAAACTATAACACCATAGCCTGCAATACTAAATCCAGTCCGATTGCTGATCTGTCTGAAAATGATACTGGAAGTCTTGGTTCTGAAGTGTTTGATGGAATTAGACTCGCAGAGTCTGTGATTCCTTTCAAAGAAGTGAGCTCCTTGGAGAACTTCAACATCATCGTCGATGGTTTCATCATAAATTCCGAGTTACCCAAACCAGTTTTGGCGAAGTACTATGACCTTTGCTGCAGTCAAAACGCATACCTTCATGAACATCTTCTGGATGGTCTTAATTGGCAACTCATAACCGGGGCAATTTCTGAAATAACCACCATCGCAGAAGGCATAAGAACCTGCAAGGCTTCCACATTAGAATGTAATTTTCCAACTTGGAATAAGACTCTACAGGCCTTTGAGGTGTTTGGCATGAATGTTGGTTTCCTGCGTACCCGGCTAGACAAGCTTGCAAGTCTCGCTTCAGAGTCAAAAAGAGGTAAAGAGGCAAGACATGAAAGGGAACAAGCAGAAGTAGAGATGAGAACCTTGGAGGCAAAGCTGTTGGAAGTGAAAAGGACCATAAGCAGGCTGTTGGAAGTAGAGACTGAGACTCAAAATGTGAGTACAGAAAAGCTTGAGGATATGCTCCAACAAGTGGCTAAGGCCCCTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

347

Amino Acids

38.72

Weight (kDa)

5.04

Isoelectric Point (pI)

30.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 9 - 82 3.1e-11 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 734
AccB7I CCANNNNNTGG 1 cut(s) 1024
AciI CCGC 1 cut(s) 125
AcsI RAATTY 2 cut(s) 38, 571
AcuI CTGAAG 2 cut(s) 492, 834
AfaI GTAC 3 cut(s) 605, 820, 994
AfiI CCNNNNNNNGG 2 cut(s) 954, 1024
AgsI TTSAA 4 cut(s) 222, 229, 517, 544
AluBI AGCT 4 cut(s) 528, 835, 928, 1003
AluI AGCT 4 cut(s) 528, 835, 928, 1003
Alw21I GWGCWC 1 cut(s) 530
Alw26I GTCTC 3 cut(s) 848, 965, 971
AlwNI CAGNNNCTG 1 cut(s) 503
AoxI GGCC 3 cut(s) 280, 780, 1032
ApeKI GCWGC 1 cut(s) 618
ApoI RAATTY 2 cut(s) 38, 571
Asp700I GAANNNNTTC 1 cut(s) 648
AspA2I CCTAGG 1 cut(s) 292
AspS9I GGNCC 2 cut(s) 945, 1033
AsuC2I CCSGG 2 cut(s) 682, 823
AvaII GGWCC 1 cut(s) 945
AvrII CCTAGG 1 cut(s) 292
BanII GRGCYC 1 cut(s) 530
BbsI GAAGAC 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 530
BbvI GCAGC 1 cut(s) 605
BccI CCATC 6 cut(s) 144, 213, 476, 551, 650, 713
BciVI GTATCC 1 cut(s) 310
BcnI CCSGG 2 cut(s) 682, 823
BcoDI GTCTC 3 cut(s) 848, 965, 971
BfaI CTAG 2 cut(s) 293, 827
BfmI CTRYAG 2 cut(s) 619, 776
BfuAI ACCTGC 1 cut(s) 734
BfuI GTATCC 1 cut(s) 310
BisI GCNGC 1 cut(s) 619
BlnI CCTAGG 1 cut(s) 292
BlsI GCNGC 1 cut(s) 620
BmcAI AGTACT 1 cut(s) 605
Bme1390I CCNGG 2 cut(s) 682, 823
Bme18I GGWCC 1 cut(s) 945
BmgT120I GGNCC 2 cut(s) 945, 1033
BmiI GGNNCC 1 cut(s) 1035
BmrFI CCNGG 2 cut(s) 682, 823
BmrI ACTGGG 1 cut(s) 330
BmuI ACTGGG 1 cut(s) 330
BpiI GAAGAC 1 cut(s) 20
Bpu10I CCTNAGC 1 cut(s) 1029
BpuEI CTTGAG 1 cut(s) 1025
BpuMI CCSGG 2 cut(s) 682, 823
BsaJI CCNNGG 5 cut(s) 292, 531, 681, 915, 1037
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
Bsc4I CCNNNNNNNGG 2 cut(s) 954, 1024
Bse1I ACTGG 4 cut(s) 325, 423, 460, 590
BseDI CCNNGG 5 cut(s) 292, 531, 681, 915, 1037
BseGI GGATG 2 cut(s) 155, 661
BseLI CCNNNNNNNGG 2 cut(s) 954, 1024
BseMII CTCAG 2 cut(s) 131, 966
BseNI ACTGG 4 cut(s) 325, 423, 460, 590
BseXI GCAGC 1 cut(s) 605
BsgI GTGCAG 1 cut(s) 41
BshFI GGCC 3 cut(s) 282, 782, 1034
BsiHKAI GWGCWC 1 cut(s) 530
BsiSI CCGG 2 cut(s) 681, 823
BslFI GGGAC 1 cut(s) 338
BslI CCNNNNNNNGG 2 cut(s) 954, 1024
BsmAI GTCTC 3 cut(s) 848, 965, 971
BsmFI GGGAC 1 cut(s) 338
BsnI GGCC 3 cut(s) 282, 782, 1034
Bsp1286I GDGCHC 1 cut(s) 530
Bsp143I GATC 2 cut(s) 245, 436
BspACI CCGC 1 cut(s) 125
BspANI GGCC 3 cut(s) 282, 782, 1034
BspCNI CTCAG 2 cut(s) 132, 967
BspHI TCATGA 1 cut(s) 640
BspLI GGNNCC 1 cut(s) 1035
BspMAI CTGCAG 1 cut(s) 623
BspMI ACCTGC 1 cut(s) 734
BsrI ACTGG 4 cut(s) 325, 423, 460, 590
BssECI CCNNGG 5 cut(s) 292, 531, 681, 915, 1037
BssMI GATC 2 cut(s) 245, 436
BssT1I CCWWGG 4 cut(s) 292, 531, 915, 1037
Bst4CI ACNGT 1 cut(s) 95
BstC8I GCNNGC 3 cut(s) 409, 837, 956
BstDEI CTNAG 4 cut(s) 33, 140, 975, 1029
BstF5I GGATG 2 cut(s) 155, 661
BstKTI GATC 2 cut(s) 248, 439
BstMAI GTCTC 3 cut(s) 848, 965, 971
BstMBI GATC 2 cut(s) 245, 436
BstMWI GCNNNNNNNGC 4 cut(s) 279, 823, 832, 845
BstSCI CCNGG 2 cut(s) 680, 821
BstSFI CTRYAG 2 cut(s) 619, 776
BstV1I GCAGC 1 cut(s) 605
BstV2I GAAGAC 1 cut(s) 20
BsuI GTATCC 1 cut(s) 310
BsuRI GGCC 3 cut(s) 282, 782, 1034
BtgZI GCGATG 1 cut(s) 691
BtsCI GGATG 2 cut(s) 155, 661
BtsIMutI CAGTG 2 cut(s) 100, 381
BveI ACCTGC 1 cut(s) 734
Cac8I GCNNGC 3 cut(s) 409, 837, 956
CaiI CAGNNNCTG 1 cut(s) 503
CciI TCATGA 1 cut(s) 640
Cfr13I GGNCC 2 cut(s) 945, 1033
Csp6I GTAC 3 cut(s) 604, 819, 993
CviAII CATG 4 cut(s) 65, 641, 799, 881
CviQI GTAC 3 cut(s) 604, 819, 993
DdeI CTNAG 4 cut(s) 33, 140, 975, 1029
DpnI GATC 2 cut(s) 247, 438
DpnII GATC 2 cut(s) 245, 436
Ecl136II GAGCTC 1 cut(s) 528
Eco130I CCWWGG 4 cut(s) 292, 531, 915, 1037
Eco147I AGGCCT 1 cut(s) 782
Eco24I GRGCYC 1 cut(s) 530
Eco32I GATATC 1 cut(s) 6
Eco47I GGWCC 1 cut(s) 945
Eco53kI GAGCTC 1 cut(s) 528
Eco57I CTGAAG 2 cut(s) 492, 834
EcoICRI GAGCTC 1 cut(s) 528
EcoO109I RGGNCCY 1 cut(s) 1033
EcoRV GATATC 1 cut(s) 6
EcoT14I CCWWGG 4 cut(s) 292, 531, 915, 1037
EcoT38I GRGCYC 1 cut(s) 530
ErhI CCWWGG 4 cut(s) 292, 531, 915, 1037
FaeI CATG 4 cut(s) 68, 644, 802, 884
FalI AAGNNNNNCTT 2 cut(s) 832, 864
FaqI GGGAC 1 cut(s) 338
FatI CATG 4 cut(s) 64, 640, 798, 880
Fnu4HI GCNGC 1 cut(s) 619
FokI GGATG 2 cut(s) 162, 668
FriOI GRGCYC 1 cut(s) 530
Fsp4HI GCNGC 1 cut(s) 619
FspBI CTAG 2 cut(s) 293, 827
GluI GCNGC 1 cut(s) 619
HaeIII GGCC 3 cut(s) 282, 782, 1034
HapII CCGG 2 cut(s) 681, 823
Hin1II CATG 4 cut(s) 68, 644, 802, 884
HindIII AAGCTT 2 cut(s) 833, 1001
HinfI GANTC 7 cut(s) 263, 492, 500, 508, 772, 854, 979
HpaII CCGG 2 cut(s) 681, 823
Hpy188I TCNGA 8 cut(s) 259, 268, 429, 445, 472, 577, 694, 853
Hpy188III TCNNGA 2 cut(s) 641, 653
Hpy99I CGWCG 1 cut(s) 557
HpyAV CCTTC 4 cut(s) 228, 335, 647, 707
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4V TGCA 7 cut(s) 22, 52, 303, 411, 621, 729, 839
HpyF10VI GCNNNNNNNGC 4 cut(s) 279, 823, 832, 845
HpyF3I CTNAG 4 cut(s) 33, 140, 975, 1029
Hsp92II CATG 4 cut(s) 68, 644, 802, 884
Kzo9I GATC 2 cut(s) 245, 436
LmnI GCTCC 2 cut(s) 533, 1020
Lsp1109I GCAGC 1 cut(s) 605
MaeI CTAG 2 cut(s) 293, 827
MaeIII GTNAC 2 cut(s) 211, 579
MalI GATC 2 cut(s) 247, 438
MboI GATC 2 cut(s) 245, 436
MboII GAAGA 4 cut(s) 20, 98, 113, 641
MhlI GDGCHC 1 cut(s) 530
MluCI AATT 6 cut(s) 38, 486, 571, 664, 687, 751
MlyI GAGTC 5 cut(s) 486, 509, 766, 863, 973
MmeI TCCRAC 5 cut(s) 115, 782, 912, 942, 1042
MnlI CCTC 9 cut(s) 149, 178, 349, 396, 781, 857, 865, 913, 1000
MroXI GAANNNNTTC 1 cut(s) 648
MseI TTAA 2 cut(s) 306, 663
MslI CAYNNNNRTG 1 cut(s) 745
MspI CCGG 2 cut(s) 681, 823
MspR9I CCNGG 2 cut(s) 682, 823
MwoI GCNNNNNNNGC 4 cut(s) 279, 823, 832, 845
NciI CCSGG 2 cut(s) 682, 823
NdeII GATC 2 cut(s) 245, 436
NlaIII CATG 4 cut(s) 68, 644, 802, 884
NlaIV GGNNCC 1 cut(s) 1035
NmuCI GTSAC 1 cut(s) 211
PagI TCATGA 1 cut(s) 640
PceI AGGCCT 1 cut(s) 782
PdmI GAANNNNTTC 1 cut(s) 648
PfeI GAWTC 2 cut(s) 263, 508
PflMI CCANNNNNTGG 1 cut(s) 1024
PkrI GCNGC 1 cut(s) 620
PleI GAGTC 5 cut(s) 486, 508, 766, 862, 973
PpsI GAGTC 5 cut(s) 486, 508, 766, 862, 973
Psp124BI GAGCTC 1 cut(s) 530
PspN4I GGNNCC 1 cut(s) 1035
PspPI GGNCC 2 cut(s) 945, 1033
PstI CTGCAG 1 cut(s) 623
PstNI CAGNNNCTG 1 cut(s) 503
RsaI GTAC 3 cut(s) 605, 820, 994
RsaNI GTAC 3 cut(s) 604, 819, 993
RseI CAYNNNNRTG 1 cut(s) 745
SacI GAGCTC 1 cut(s) 530
SaqAI TTAA 2 cut(s) 306, 663
SatI GCNGC 1 cut(s) 619
Sau3AI GATC 2 cut(s) 245, 436
Sau96I GGNCC 2 cut(s) 945, 1033
ScaI AGTACT 1 cut(s) 605
SchI GAGTC 5 cut(s) 486, 509, 766, 863, 973
ScrFI CCNGG 2 cut(s) 682, 823
SduI GDGCHC 1 cut(s) 530
SfcI CTRYAG 2 cut(s) 619, 776
SinI GGWCC 1 cut(s) 945
SmiMI CAYNNNNRTG 1 cut(s) 745
SmlI CTYRAG 1 cut(s) 1004
SmoI CTYRAG 1 cut(s) 1004
Sse9I AATT 6 cut(s) 38, 486, 571, 664, 687, 751
SseBI AGGCCT 1 cut(s) 782
SsiI CCGC 1 cut(s) 125
SspMI CTAG 2 cut(s) 293, 827
SstI GAGCTC 1 cut(s) 530
StuI AGGCCT 1 cut(s) 782
StyD4I CCNGG 2 cut(s) 680, 821
StyI CCWWGG 4 cut(s) 292, 531, 915, 1037
TaaI ACNGT 1 cut(s) 95
TaqI TCGA 3 cut(s) 164, 244, 555
TasI AATT 6 cut(s) 38, 486, 571, 664, 687, 751
TatI WGTACW 2 cut(s) 603, 992
TfiI GAWTC 2 cut(s) 263, 508
Tru1I TTAA 2 cut(s) 306, 663
Tru9I TTAA 2 cut(s) 306, 663
TscAI CASTG 2 cut(s) 100, 381
TseFI GTSAC 1 cut(s) 211
TseI GCWGC 1 cut(s) 618
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 7 cut(s) 276, 302, 553, 629, 657, 815, 897
TspRI CASTG 2 cut(s) 100, 381
Van91I CCANNNNNTGG 1 cut(s) 1024
VpaK11BI GGWCC 1 cut(s) 945
XapI RAATTY 2 cut(s) 38, 571
XcmI CCANNNNNNNNNTGG 1 cut(s) 592
XmaJI CCTAGG 1 cut(s) 292
XmnI GAANNNNTTC 1 cut(s) 648
XspI CTAG 2 cut(s) 293, 827
ZrmI AGTACT 1 cut(s) 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.