Rh6BG087200

B3 domain-containing protein Os01g0234100-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001540
Physical Location & Seq
Reverse (-)
13587707 .. 13592091
4385 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG087200.1

Sequence Viewer

Length: 1341 bp
ATGAGTGAGACACAGAGACTCTCAATGGCTATTGTTCCATTCCAGGAACACATACCCTCTTGTTCACCCCCCAAGTTCAACACTGAGAGGCCACTAAAGGAGAAGGAACATGTTTTCAGGGACAAGTCTTCATGTCTCAGAGAGATAACCAACGTGGTCAATGCTAATACCATGAAGTCTGAAAGTGACAAACTGAAGAGATGTAAGAAAGCTACTGTAGAAAGCTTGTATGATACTTCCGAAGCTCAGTGTTCTGTTATGGAGAGAGCGAAGAAGCTTGAAGCCAATCTAGCACCGGAGTTCCCTAGAGTGGCCAAAGTTATGCGCCCATCAAATGTCACTGGATGCTTCTGTCTTAATCTTCCTAAGAAATTTTGCAGTGATCATTTGCCAAAGCAGGATACAATGATTGTTTTAGAAGATGAAAGTGGGAGAGAATTCCAGACGAAATATCTTGTGGGAAAGGCTGGACTTAGTGCTGGATGGAGAGGATTTTCAATTGCTCACAAGTTATTGGCTGGAGATGTTGTAGTTTTCCAGCGAGTTACTCTTTCCAAATTTAAGGTGTATATTGTTAGATCAAGTGGTTTAGATGTGGCAGATTGTGCTCTTGGCCTTGTTAAATTAGATGCTGGCATCAGACAAATGGATACTGCAAACTTTACTGCACGTGAAACTGCAAGAGTGTCCATTCCTCGTGAACCTATTCAAAAGAAGAACACCATAGCCTGCAATACCTCATTGGCTCCAATGTCAGATCGCTCTGGAAATGATGGTGAAGATTTTGGTTCTGAAGTTCTGGATGGAATTAGGCTTGCAGAGTCTGTTATCCCTTTCAAAGAAGTGAAAGGCATGGAAAACTTTGATGTCATTATCAATGGTTTGGTCCTAAATTCTGAGTTTTCAAAGTACCATTTGACCAAGTACTATGAGCTCTGCTGCAGTCAAAGCTCATTCCTTCATAAGAATATTCTTGAGGGTCTTAACTTCAAACTGGTTGCTGGAATAATTTCTGAGACAATCAATATTTCAGATGCCATTAGAGCCTGCAAGATTACCACTTCAGAGTGTGATTTTTTGACTTGGGATAAGACTTTGCAAGCCTCTGAGACGTTAGGCATGAATGTTGGCTTCCTGCGTACCCGGCTAAACAAGCTTGCAAGCCTTGCTTCAGAATCAAAACGATATAGTAATCTTGAAGGAGGCCGAGCAGAAGCGGAAGTAAAGCTTTTGGGGAAAAAGGAGACCACAACTTGGTTTGATTCTGAGATTGAGACTCATAATTTGTTGTCTGAGAGGCTTAAAGCTATGTTCGAAGAAGTGGCTAGGGTCCCTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

446

Amino Acids

49.9

Weight (kDa)

8.31

Isoelectric Point (pI)

39.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 105 - 194 2e-15 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1254
AciI CCGC 1 cut(s) 1217
AcoI YGGCCR 1 cut(s) 312
AcsI RAATTY 4 cut(s) 371, 437, 557, 892
AcuI CTGAAG 4 cut(s) 215, 813, 1047, 1155
AcvI CACGTG 1 cut(s) 671
AfaI GTAC 3 cut(s) 911, 926, 1141
AfiI CCNNNNNNNGG 2 cut(s) 310, 1254
AflIII ACRYGT 1 cut(s) 109
AgsI TTSAA 8 cut(s) 79, 281, 498, 710, 838, 906, 991, 1199
AjnI CCWGG 1 cut(s) 42
AluBI AGCT 9 cut(s) 212, 225, 245, 277, 934, 951, 1156, 1228, 1307
AluI AGCT 9 cut(s) 212, 225, 245, 277, 934, 951, 1156, 1228, 1307
Alw21I GWGCWC 2 cut(s) 610, 936
Alw26I GTCTC 7 cut(s) 2, 10, 140, 1010, 1103, 1238, 1268
AlwNI CAGNNNCTG 1 cut(s) 824
AoxI GGCC 4 cut(s) 89, 312, 613, 1204
ApeKI GCWGC 1 cut(s) 939
ApoI RAATTY 4 cut(s) 371, 437, 557, 892
ArsI GACNNNNNNTTYG 2 cut(s) 1267, 1299
Asp700I GAANNNNTTC 2 cut(s) 705, 1009
AspLEI GCGC 1 cut(s) 327
AspS9I GGNCC 2 cut(s) 886, 1330
AsuC2I CCSGG 1 cut(s) 1144
AsuHPI GGTGA 2 cut(s) 57, 788
AsuII TTCGAA 1 cut(s) 1314
AvaII GGWCC 2 cut(s) 886, 1330
BalI TGGCCA 1 cut(s) 314
BanII GRGCYC 1 cut(s) 936
BauI CACGAG 1 cut(s) 696
BbrPI CACGTG 1 cut(s) 671
BbsI GAAGAC 1 cut(s) 120
Bbv12I GWGCWC 2 cut(s) 610, 936
BbvI GCAGC 1 cut(s) 926
BccI CCATC 4 cut(s) 337, 477, 767, 797
BciT130I CCWGG 1 cut(s) 44
BciVI GTATCC 2 cut(s) 394, 643
BclI TGATCA 1 cut(s) 382
BcnI CCSGG 1 cut(s) 1144
BcoDI GTCTC 7 cut(s) 2, 10, 140, 1010, 1103, 1238, 1268
BfaI CTAG 3 cut(s) 290, 306, 1326
BfmI CTRYAG 2 cut(s) 216, 940
BfuI GTATCC 2 cut(s) 394, 643
BisI GCNGC 1 cut(s) 940
BlsI GCNGC 1 cut(s) 941
BmcAI AGTACT 1 cut(s) 926
Bme1390I CCNGG 2 cut(s) 44, 1144
Bme18I GGWCC 2 cut(s) 886, 1330
BmgT120I GGNCC 2 cut(s) 886, 1330
BmiI GGNNCC 3 cut(s) 747, 1331, 1332
BmrFI CCNGG 2 cut(s) 44, 1144
BmsI GCATC 4 cut(s) 335, 619, 645, 1024
BpiI GAAGAC 1 cut(s) 120
BpmI CTGGAG 1 cut(s) 540
Bpu14I TTCGAA 1 cut(s) 1314
BpuEI CTTGAG 1 cut(s) 995
BpuMI CCSGG 1 cut(s) 1144
BsaAI YACGTR 1 cut(s) 671
BsaI GGTCTC 1 cut(s) 1238
BsaJI CCNNGG 1 cut(s) 1334
BsaWI WCCGGW 1 cut(s) 295
BsaXI ACNNNNNCTCC 2 cut(s) 513, 543
Bsc4I CCNNNNNNNGG 2 cut(s) 310, 1254
Bse1I ACTGG 2 cut(s) 346, 999
BseBI CCWGG 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 1334
BseGI GGATG 3 cut(s) 350, 488, 808
BseLI CCNNNNNNNGG 2 cut(s) 310, 1254
BseMII CTCAG 8 cut(s) 75, 151, 260, 888, 1005, 1098, 1257, 1284
BseNI ACTGG 2 cut(s) 346, 999
BseXI GCAGC 1 cut(s) 926
BsgI GTGCAG 1 cut(s) 651
BshFI GGCC 4 cut(s) 91, 314, 615, 1206
BsiHKAI GWGCWC 2 cut(s) 610, 936
BsiSI CCGG 2 cut(s) 296, 1144
BslFI GGGAC 2 cut(s) 134, 1316
BslI CCNNNNNNNGG 2 cut(s) 310, 1254
BsmAI GTCTC 7 cut(s) 2, 10, 140, 1010, 1103, 1238, 1268
BsmBI CGTCTC 1 cut(s) 1103
BsmFI GGGAC 2 cut(s) 134, 1316
BsnI GGCC 4 cut(s) 91, 314, 615, 1206
Bso31I GGTCTC 1 cut(s) 1238
Bsp119I TTCGAA 1 cut(s) 1314
Bsp1286I GDGCHC 2 cut(s) 610, 936
Bsp143I GATC 3 cut(s) 382, 578, 757
BspACI CCGC 1 cut(s) 1217
BspANI GGCC 4 cut(s) 91, 314, 615, 1206
BspCNI CTCAG 8 cut(s) 76, 150, 259, 889, 1006, 1099, 1258, 1285
BspLI GGNNCC 3 cut(s) 747, 1331, 1332
BspMAI CTGCAG 1 cut(s) 944
BspT104I TTCGAA 1 cut(s) 1314
BspTNI GGTCTC 1 cut(s) 1238
BsrI ACTGG 2 cut(s) 346, 999
BssECI CCNNGG 1 cut(s) 1334
BssMI GATC 3 cut(s) 382, 578, 757
BssSI CACGAG 1 cut(s) 696
BssT1I CCWWGG 1 cut(s) 1334
Bst2BI CACGAG 1 cut(s) 696
Bst2UI CCWGG 1 cut(s) 44
Bst4CI ACNGT 1 cut(s) 217
Bst6I CTCTTC 1 cut(s) 191
BstAPI GCANNNNNTGC 2 cut(s) 605, 1166
BstBAI YACGTR 1 cut(s) 671
BstBI TTCGAA 1 cut(s) 1314
BstC8I GCNNGC 7 cut(s) 634, 730, 816, 1048, 1101, 1158, 1162
BstF5I GGATG 3 cut(s) 350, 488, 808
BstHHI GCGC 1 cut(s) 327
BstKTI GATC 3 cut(s) 385, 581, 760
BstMAI GTCTC 7 cut(s) 2, 10, 140, 1010, 1103, 1238, 1268
BstMBI GATC 3 cut(s) 382, 578, 757
BstMWI GCNNNNNNNGC 7 cut(s) 290, 605, 948, 1043, 1144, 1153, 1166
BstNI CCWGG 1 cut(s) 44
BstNSI RCATGY 1 cut(s) 113
BstSCI CCNGG 2 cut(s) 42, 1142
BstSFI CTRYAG 2 cut(s) 216, 940
BstV1I GCAGC 1 cut(s) 926
BstV2I GAAGAC 1 cut(s) 120
BsuI GTATCC 2 cut(s) 394, 643
BsuRI GGCC 4 cut(s) 91, 314, 615, 1206
BtsCI GGATG 3 cut(s) 350, 488, 808
BtsI GCAGTG 1 cut(s) 385
BtsIMutI CAGTG 4 cut(s) 81, 254, 339, 385
Cac8I GCNNGC 7 cut(s) 634, 730, 816, 1048, 1101, 1158, 1162
CaiI CAGNNNCTG 1 cut(s) 824
CfoI GCGC 1 cut(s) 327
Cfr13I GGNCC 2 cut(s) 886, 1330
Csp6I GTAC 3 cut(s) 910, 925, 1140
CviAII CATG 5 cut(s) 110, 132, 172, 853, 1120
CviQI GTAC 3 cut(s) 910, 925, 1140
DpnI GATC 3 cut(s) 384, 580, 759
DpnII GATC 3 cut(s) 382, 578, 757
EaeI YGGCCR 1 cut(s) 312
Eam1104I CTCTTC 1 cut(s) 191
EarI CTCTTC 1 cut(s) 191
Ecl136II GAGCTC 1 cut(s) 934
Eco130I CCWWGG 1 cut(s) 1334
Eco24I GRGCYC 1 cut(s) 936
Eco31I GGTCTC 1 cut(s) 1238
Eco47I GGWCC 2 cut(s) 886, 1330
Eco53kI GAGCTC 1 cut(s) 934
Eco57I CTGAAG 4 cut(s) 215, 813, 1047, 1155
Eco72I CACGTG 1 cut(s) 671
EcoICRI GAGCTC 1 cut(s) 934
EcoO109I RGGNCCY 1 cut(s) 1330
EcoRI GAATTC 1 cut(s) 437
EcoRII CCWGG 1 cut(s) 42
EcoT14I CCWWGG 1 cut(s) 1334
EcoT38I GRGCYC 1 cut(s) 936
ErhI CCWWGG 1 cut(s) 1334
Esp3I CGTCTC 1 cut(s) 1103
FaeI CATG 5 cut(s) 113, 135, 175, 856, 1123
FalI AAGNNNNNCTT 4 cut(s) 1153, 1185, 1212, 1244
FaqI GGGAC 2 cut(s) 134, 1316
FatI CATG 5 cut(s) 109, 131, 171, 852, 1119
FbaI TGATCA 1 cut(s) 382
Fnu4HI GCNGC 1 cut(s) 940
FokI GGATG 3 cut(s) 357, 495, 815
FriOI GRGCYC 1 cut(s) 936
Fsp4HI GCNGC 1 cut(s) 940
FspBI CTAG 3 cut(s) 290, 306, 1326
GlaI GCGC 1 cut(s) 326
GluI GCNGC 1 cut(s) 940
GsuI CTGGAG 1 cut(s) 540
HaeIII GGCC 4 cut(s) 91, 314, 615, 1206
HapII CCGG 2 cut(s) 296, 1144
HhaI GCGC 1 cut(s) 327
Hin1II CATG 5 cut(s) 113, 135, 175, 856, 1123
Hin6I GCGC 1 cut(s) 325
HinP1I GCGC 1 cut(s) 325
HindIII AAGCTT 4 cut(s) 223, 275, 1154, 1226
HinfI GANTC 5 cut(s) 18, 821, 1175, 1262, 1276
HpaII CCGG 2 cut(s) 296, 1144
HphI GGTGA 2 cut(s) 57, 788
Hpy166II GTNNAC 2 cut(s) 65, 701
Hpy188III TCNNGA 6 cut(s) 442, 698, 765, 800, 974, 1196
Hpy8I GTNNAC 2 cut(s) 65, 701
HpyAV CCTTC 3 cut(s) 97, 968, 1193
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4IV ACGT 3 cut(s) 153, 670, 1112
HpyF10VI GCNNNNNNNGC 7 cut(s) 290, 605, 948, 1043, 1144, 1153, 1166
HpySE526I ACGT 3 cut(s) 153, 670, 1112
Hsp92II CATG 5 cut(s) 113, 135, 175, 856, 1123
HspAI GCGC 1 cut(s) 325
KflI GGGWCCC 1 cut(s) 1330
Ksp22I TGATCA 1 cut(s) 382
Kzo9I GATC 3 cut(s) 382, 578, 757
LmnI GCTCC 1 cut(s) 751
Lsp1109I GCAGC 1 cut(s) 926
LweI GCATC 4 cut(s) 335, 619, 645, 1024
MaeI CTAG 3 cut(s) 290, 306, 1326
MaeII ACGT 3 cut(s) 153, 670, 1112
MaeIII GTNAC 3 cut(s) 185, 337, 544
MalI GATC 3 cut(s) 384, 580, 759
MboI GATC 3 cut(s) 382, 578, 757
MboII GAAGA 8 cut(s) 120, 208, 283, 353, 431, 727, 791, 1328
MfeI CAATTG 1 cut(s) 498
MhlI GDGCHC 2 cut(s) 610, 936
MlsI TGGCCA 1 cut(s) 314
MluCI AATT 9 cut(s) 371, 437, 498, 557, 623, 807, 892, 1008, 1282
MluNI TGGCCA 1 cut(s) 314
MlyI GAGTC 3 cut(s) 12, 830, 1270
MnlI CCTC 9 cut(s) 67, 81, 482, 705, 748, 970, 1114, 1196, 1290
Mox20I TGGCCA 1 cut(s) 314
MroXI GAANNNNTTC 2 cut(s) 705, 1009
MscI TGGCCA 1 cut(s) 314
MseI TTAA 5 cut(s) 357, 561, 621, 984, 1302
Msp20I TGGCCA 1 cut(s) 314
MspI CCGG 2 cut(s) 296, 1144
MspR9I CCNGG 2 cut(s) 44, 1144
MunI CAATTG 1 cut(s) 498
MvaI CCWGG 1 cut(s) 44
MwoI GCNNNNNNNGC 7 cut(s) 290, 605, 948, 1043, 1144, 1153, 1166
NciI CCSGG 1 cut(s) 1144
NdeII GATC 3 cut(s) 382, 578, 757
NlaIII CATG 5 cut(s) 113, 135, 175, 856, 1123
NlaIV GGNNCC 3 cut(s) 747, 1331, 1332
NmeAIII GCCGAG 1 cut(s) 1232
NmuCI GTSAC 2 cut(s) 185, 337
NspI RCATGY 1 cut(s) 113
NspV TTCGAA 1 cut(s) 1314
PciI ACATGT 1 cut(s) 109
PdmI GAANNNNTTC 2 cut(s) 705, 1009
PfeI GAWTC 2 cut(s) 1175, 1262
PflMI CCANNNNNTGG 1 cut(s) 1254
PfoI TCCNGGA 1 cut(s) 42
PkrI GCNGC 1 cut(s) 941
PleI GAGTC 3 cut(s) 12, 829, 1270
PmaCI CACGTG 1 cut(s) 671
PmlI CACGTG 1 cut(s) 671
PpsI GAGTC 3 cut(s) 12, 829, 1270
Ppu21I YACGTR 1 cut(s) 671
PpuMI RGGWCCY 1 cut(s) 1330
PscI ACATGT 1 cut(s) 109
Psp124BI GAGCTC 1 cut(s) 936
Psp5II RGGWCCY 1 cut(s) 1330
Psp6I CCWGG 1 cut(s) 42
PspCI CACGTG 1 cut(s) 671
PspGI CCWGG 1 cut(s) 42
PspN4I GGNNCC 3 cut(s) 747, 1331, 1332
PspPI GGNCC 2 cut(s) 886, 1330
PspPPI RGGWCCY 1 cut(s) 1330
PstI CTGCAG 1 cut(s) 944
PstNI CAGNNNCTG 1 cut(s) 824
RsaI GTAC 3 cut(s) 911, 926, 1141
RsaNI GTAC 3 cut(s) 910, 925, 1140
SacI GAGCTC 1 cut(s) 936
SaqAI TTAA 5 cut(s) 357, 561, 621, 984, 1302
SatI GCNGC 1 cut(s) 940
Sau3AI GATC 3 cut(s) 382, 578, 757
Sau96I GGNCC 2 cut(s) 886, 1330
ScaI AGTACT 1 cut(s) 926
SchI GAGTC 3 cut(s) 12, 830, 1270
ScrFI CCNGG 2 cut(s) 44, 1144
SduI GDGCHC 2 cut(s) 610, 936
SfaNI GCATC 4 cut(s) 335, 619, 645, 1024
SfcI CTRYAG 2 cut(s) 216, 940
SfuI TTCGAA 1 cut(s) 1314
SinI GGWCC 2 cut(s) 886, 1330
SmlI CTYRAG 1 cut(s) 974
SmoI CTYRAG 1 cut(s) 974
Sse9I AATT 9 cut(s) 371, 437, 498, 557, 623, 807, 892, 1008, 1282
SsiI CCGC 1 cut(s) 1217
SspI AATATT 2 cut(s) 970, 1027
SspMI CTAG 3 cut(s) 290, 306, 1326
SstI GAGCTC 1 cut(s) 936
StyD4I CCNGG 2 cut(s) 42, 1142
StyI CCWWGG 1 cut(s) 1334
TaaI ACNGT 1 cut(s) 217
TaiI ACGT 3 cut(s) 156, 673, 1115
TaqI TCGA 1 cut(s) 1314
TasI AATT 9 cut(s) 371, 437, 498, 557, 623, 807, 892, 1008, 1282
TatI WGTACW 1 cut(s) 924
TfiI GAWTC 2 cut(s) 1175, 1262
Tru1I TTAA 5 cut(s) 357, 561, 621, 984, 1302
Tru9I TTAA 5 cut(s) 357, 561, 621, 984, 1302
TscAI CASTG 4 cut(s) 88, 254, 346, 385
TseFI GTSAC 2 cut(s) 185, 337
TseI GCWGC 1 cut(s) 939
Tsp45I GTSAC 2 cut(s) 185, 337
TspDTI ATGAA 5 cut(s) 120, 188, 438, 950, 1136
TspRI CASTG 4 cut(s) 88, 254, 346, 385
Van91I CCANNNNNTGG 1 cut(s) 1254
VpaK11BI GGWCC 2 cut(s) 886, 1330
XapI RAATTY 4 cut(s) 371, 437, 557, 892
XceI RCATGY 1 cut(s) 113
XmnI GAANNNNTTC 2 cut(s) 705, 1009
XspI CTAG 3 cut(s) 290, 306, 1326
ZrmI AGTACT 1 cut(s) 926
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.