B3 domain-containing protein Os01g0234100-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| B3 | PF02362 | 191 - 280 | 4.7e-16 | B3 DNA binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 62 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1512 |
| AccII | CGCG | 1 cut(s) | 254 |
| AciI | CCGC | 5 cut(s) | 4, 140, 254, 636, 1475 |
| AclWI | GGATC | 4 cut(s) | 124, 157, 264, 292 |
| AcoI | YGGCCR | 1 cut(s) | 570 |
| AcsI | RAATTY | 4 cut(s) | 629, 695, 815, 1150 |
| AcuI | CTGAAG | 4 cut(s) | 473, 1071, 1305, 1413 |
| AcvI | CACGTG | 1 cut(s) | 929 |
| AcyI | GRCGYC | 1 cut(s) | 894 |
| AfaI | GTAC | 5 cut(s) | 312, 855, 1169, 1184, 1399 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 28, 146, 568, 1512 |
| AflIII | ACRYGT | 2 cut(s) | 307, 367 |
| AgsI | TTSAA | 8 cut(s) | 337, 539, 756, 968, 1096, 1164, 1249, 1457 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 17 |
| AjnI | CCWGG | 3 cut(s) | 124, 292, 873 |
| AluBI | AGCT | 8 cut(s) | 470, 483, 503, 535, 1192, 1414, 1486, 1565 |
| AluI | AGCT | 8 cut(s) | 470, 483, 503, 535, 1192, 1414, 1486, 1565 |
| Alw21I | GWGCWC | 2 cut(s) | 868, 1194 |
| Alw26I | GTCTC | 7 cut(s) | 153, 234, 398, 1268, 1361, 1496, 1526 |
| AlwI | GGATC | 4 cut(s) | 124, 157, 264, 292 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1082 |
| AoxI | GGCC | 5 cut(s) | 347, 570, 871, 1462, 1587 |
| ApaI | GGGCCC | 1 cut(s) | 1591 |
| ApeKI | GCWGC | 1 cut(s) | 1197 |
| ApoI | RAATTY | 4 cut(s) | 629, 695, 815, 1150 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1525, 1557 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 963, 1267 |
| AspLEI | GCGC | 1 cut(s) | 585 |
| AspS9I | GGNCC | 3 cut(s) | 1144, 1587, 1588 |
| AsuC2I | CCSGG | 3 cut(s) | 98, 266, 1402 |
| AsuHPI | GGTGA | 7 cut(s) | 65, 86, 114, 254, 282, 650, 1046 |
| AsuII | TTCGAA | 1 cut(s) | 1572 |
| AvaII | GGWCC | 1 cut(s) | 1144 |
| BaeGI | GKGCMC | 1 cut(s) | 1591 |
| BalI | TGGCCA | 1 cut(s) | 572 |
| BanII | GRGCYC | 2 cut(s) | 1194, 1591 |
| BauI | CACGAG | 1 cut(s) | 954 |
| BbrPI | CACGTG | 1 cut(s) | 929 |
| BbsI | GAAGAC | 3 cut(s) | 190, 378, 611 |
| Bbv12I | GWGCWC | 2 cut(s) | 868, 1194 |
| BbvI | GCAGC | 1 cut(s) | 1184 |
| BccI | CCATC | 5 cut(s) | 210, 595, 735, 1025, 1055 |
| BceAI | ACGGC | 3 cut(s) | 61, 94, 262 |
| BciT130I | CCWGG | 3 cut(s) | 126, 294, 875 |
| BciVI | GTATCC | 2 cut(s) | 652, 901 |
| BclI | TGATCA | 1 cut(s) | 640 |
| BcnI | CCSGG | 3 cut(s) | 98, 266, 1402 |
| BcoDI | GTCTC | 7 cut(s) | 153, 234, 398, 1268, 1361, 1496, 1526 |
| BfaI | CTAG | 2 cut(s) | 548, 564 |
| BfmI | CTRYAG | 2 cut(s) | 474, 1198 |
| BfuI | GTATCC | 2 cut(s) | 652, 901 |
| BisI | GCNGC | 1 cut(s) | 1198 |
| BlsI | GCNGC | 1 cut(s) | 1199 |
| BmcAI | AGTACT | 1 cut(s) | 1184 |
| Bme1390I | CCNGG | 6 cut(s) | 98, 126, 266, 294, 875, 1402 |
| Bme18I | GGWCC | 1 cut(s) | 1144 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 17 |
| BmgT120I | GGNCC | 3 cut(s) | 1144, 1587, 1588 |
| BmiI | GGNNCC | 3 cut(s) | 1005, 1589, 1590 |
| BmrFI | CCNGG | 6 cut(s) | 98, 126, 266, 294, 875, 1402 |
| BmsI | GCATC | 6 cut(s) | 110, 278, 306, 593, 877, 1282 |
| BpiI | GAAGAC | 3 cut(s) | 190, 378, 611 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1519, 1551 |
| BpmI | CTGGAG | 1 cut(s) | 798 |
| Bpu14I | TTCGAA | 1 cut(s) | 1572 |
| BpuEI | CTTGAG | 1 cut(s) | 1253 |
| BpuMI | CCSGG | 3 cut(s) | 98, 266, 1402 |
| BsaAI | YACGTR | 2 cut(s) | 310, 929 |
| BsaHI | GRCGYC | 1 cut(s) | 894 |
| BsaI | GGTCTC | 1 cut(s) | 1496 |
| BsaJI | CCNNGG | 1 cut(s) | 1592 |
| BsaWI | WCCGGW | 2 cut(s) | 236, 553 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 210, 240, 771, 801 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 28, 146, 568, 1512 |
| Bse1I | ACTGG | 2 cut(s) | 604, 1257 |
| BseBI | CCWGG | 3 cut(s) | 126, 294, 875 |
| BseDI | CCNNGG | 1 cut(s) | 1592 |
| BseGI | GGATG | 3 cut(s) | 608, 746, 1066 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 28, 146, 568, 1512 |
| BseMII | CTCAG | 8 cut(s) | 333, 409, 518, 1146, 1263, 1356, 1515, 1542 |
| BseNI | ACTGG | 2 cut(s) | 604, 1257 |
| BseSI | GKGCMC | 1 cut(s) | 1591 |
| BseXI | GCAGC | 1 cut(s) | 1184 |
| BsgI | GTGCAG | 1 cut(s) | 909 |
| Bsh1236I | CGCG | 1 cut(s) | 254 |
| BshFI | GGCC | 5 cut(s) | 349, 572, 873, 1464, 1589 |
| BsiHKAI | GWGCWC | 2 cut(s) | 868, 1194 |
| BsiSI | CCGG | 5 cut(s) | 97, 237, 265, 554, 1402 |
| BslFI | GGGAC | 2 cut(s) | 24, 392 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 28, 146, 568, 1512 |
| BsmAI | GTCTC | 7 cut(s) | 153, 234, 398, 1268, 1361, 1496, 1526 |
| BsmBI | CGTCTC | 2 cut(s) | 234, 1361 |
| BsmFI | GGGAC | 2 cut(s) | 24, 392 |
| BsnI | GGCC | 5 cut(s) | 349, 572, 873, 1464, 1589 |
| Bso31I | GGTCTC | 1 cut(s) | 1496 |
| Bsp119I | TTCGAA | 1 cut(s) | 1572 |
| Bsp120I | GGGCCC | 1 cut(s) | 1587 |
| Bsp1286I | GDGCHC | 3 cut(s) | 868, 1194, 1591 |
| Bsp143I | GATC | 7 cut(s) | 116, 149, 256, 284, 640, 836, 1015 |
| BspACI | CCGC | 5 cut(s) | 4, 140, 254, 636, 1475 |
| BspANI | GGCC | 5 cut(s) | 349, 572, 873, 1464, 1589 |
| BspCNI | CTCAG | 8 cut(s) | 334, 408, 517, 1147, 1264, 1357, 1516, 1543 |
| BspFNI | CGCG | 1 cut(s) | 254 |
| BspLI | GGNNCC | 3 cut(s) | 1005, 1589, 1590 |
| BspMAI | CTGCAG | 1 cut(s) | 1202 |
| BspPI | GGATC | 4 cut(s) | 124, 157, 264, 292 |
| BspT104I | TTCGAA | 1 cut(s) | 1572 |
| BspTNI | GGTCTC | 1 cut(s) | 1496 |
| BsrI | ACTGG | 2 cut(s) | 604, 1257 |
| BssECI | CCNNGG | 1 cut(s) | 1592 |
| BssMI | GATC | 7 cut(s) | 116, 149, 256, 284, 640, 836, 1015 |
| BssNI | GRCGYC | 1 cut(s) | 894 |
| BssSI | CACGAG | 1 cut(s) | 954 |
| BssT1I | CCWWGG | 1 cut(s) | 1592 |
| Bst2BI | CACGAG | 1 cut(s) | 954 |
| Bst2UI | CCWGG | 3 cut(s) | 126, 294, 875 |
| Bst4CI | ACNGT | 1 cut(s) | 475 |
| Bst6I | CTCTTC | 1 cut(s) | 449 |
| BstACI | GRCGYC | 1 cut(s) | 894 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1424 |
| BstBAI | YACGTR | 2 cut(s) | 310, 929 |
| BstBI | TTCGAA | 1 cut(s) | 1572 |
| BstC8I | GCNNGC | 7 cut(s) | 892, 988, 1074, 1306, 1359, 1416, 1420 |
| BstF5I | GGATG | 3 cut(s) | 608, 746, 1066 |
| BstFNI | CGCG | 1 cut(s) | 254 |
| BstHHI | GCGC | 1 cut(s) | 585 |
| BstKTI | GATC | 7 cut(s) | 119, 152, 259, 287, 643, 839, 1018 |
| BstMAI | GTCTC | 7 cut(s) | 153, 234, 398, 1268, 1361, 1496, 1526 |
| BstMBI | GATC | 7 cut(s) | 116, 149, 256, 284, 640, 836, 1015 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 548, 1206, 1301, 1402, 1411, 1424 |
| BstNI | CCWGG | 3 cut(s) | 126, 294, 875 |
| BstNSI | RCATGY | 1 cut(s) | 371 |
| BstSCI | CCNGG | 6 cut(s) | 96, 124, 264, 292, 873, 1400 |
| BstSFI | CTRYAG | 2 cut(s) | 474, 1198 |
| BstSLI | GKGCMC | 1 cut(s) | 1591 |
| BstUI | CGCG | 1 cut(s) | 254 |
| BstV1I | GCAGC | 1 cut(s) | 1184 |
| BstV2I | GAAGAC | 3 cut(s) | 190, 378, 611 |
| BstX2I | RGATCY | 1 cut(s) | 149 |
| BstYI | RGATCY | 1 cut(s) | 149 |
| BsuI | GTATCC | 2 cut(s) | 652, 901 |
| BsuRI | GGCC | 5 cut(s) | 349, 572, 873, 1464, 1589 |
| BtgZI | GCGATG | 1 cut(s) | 179 |
| BtsCI | GGATG | 3 cut(s) | 608, 746, 1066 |
| BtsIMutI | CAGTG | 3 cut(s) | 339, 512, 597 |
| Cac8I | GCNNGC | 7 cut(s) | 892, 988, 1074, 1306, 1359, 1416, 1420 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1082 |
| CfoI | GCGC | 1 cut(s) | 585 |
| Cfr13I | GGNCC | 3 cut(s) | 1144, 1587, 1588 |
| CseI | GACGC | 2 cut(s) | 260, 883 |
| Csp6I | GTAC | 5 cut(s) | 311, 854, 1168, 1183, 1398 |
| CviAII | CATG | 5 cut(s) | 368, 390, 430, 1111, 1378 |
| CviQI | GTAC | 5 cut(s) | 311, 854, 1168, 1183, 1398 |
| DpnI | GATC | 7 cut(s) | 118, 151, 258, 286, 642, 838, 1017 |
| DpnII | GATC | 7 cut(s) | 116, 149, 256, 284, 640, 836, 1015 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 62 |
| DriI | GACNNNNNGTC | 1 cut(s) | 17 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 62 |
| EaeI | YGGCCR | 1 cut(s) | 570 |
| Eam1104I | CTCTTC | 1 cut(s) | 449 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 17 |
| EarI | CTCTTC | 1 cut(s) | 449 |
| EciI | GGCGGA | 1 cut(s) | 129 |
| Ecl136II | GAGCTC | 1 cut(s) | 1192 |
| Eco130I | CCWWGG | 1 cut(s) | 1592 |
| Eco24I | GRGCYC | 2 cut(s) | 1194, 1591 |
| Eco31I | GGTCTC | 1 cut(s) | 1496 |
| Eco47I | GGWCC | 1 cut(s) | 1144 |
| Eco53kI | GAGCTC | 1 cut(s) | 1192 |
| Eco57I | CTGAAG | 4 cut(s) | 473, 1071, 1305, 1413 |
| Eco72I | CACGTG | 1 cut(s) | 929 |
| EcoICRI | GAGCTC | 1 cut(s) | 1192 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1587, 1588 |
| EcoRI | GAATTC | 1 cut(s) | 695 |
| EcoRII | CCWGG | 3 cut(s) | 124, 292, 873 |
| EcoT14I | CCWWGG | 1 cut(s) | 1592 |
| EcoT38I | GRGCYC | 2 cut(s) | 1194, 1591 |
| ErhI | CCWWGG | 1 cut(s) | 1592 |
| Esp3I | CGTCTC | 2 cut(s) | 234, 1361 |
| FaeI | CATG | 5 cut(s) | 371, 393, 433, 1114, 1381 |
| FalI | AAGNNNNNCTT | 5 cut(s) | 1411, 1443, 1470, 1502, 1576 |
| FaqI | GGGAC | 2 cut(s) | 24, 392 |
| FatI | CATG | 5 cut(s) | 367, 389, 429, 1110, 1377 |
| FbaI | TGATCA | 1 cut(s) | 640 |
| Fnu4HI | GCNGC | 1 cut(s) | 1198 |
| FokI | GGATG | 3 cut(s) | 615, 753, 1073 |
| FriOI | GRGCYC | 2 cut(s) | 1194, 1591 |
| Fsp4HI | GCNGC | 1 cut(s) | 1198 |
| FspBI | CTAG | 2 cut(s) | 548, 564 |
| GlaI | GCGC | 1 cut(s) | 584 |
| GluI | GCNGC | 1 cut(s) | 1198 |
| GsuI | CTGGAG | 1 cut(s) | 798 |
| HaeIII | GGCC | 5 cut(s) | 349, 572, 873, 1464, 1589 |
| HapII | CCGG | 5 cut(s) | 97, 237, 265, 554, 1402 |
| HgaI | GACGC | 2 cut(s) | 260, 883 |
| HhaI | GCGC | 1 cut(s) | 585 |
| Hin1I | GRCGYC | 1 cut(s) | 894 |
| Hin1II | CATG | 5 cut(s) | 371, 393, 433, 1114, 1381 |
| Hin6I | GCGC | 1 cut(s) | 583 |
| HinP1I | GCGC | 1 cut(s) | 583 |
| HindIII | AAGCTT | 4 cut(s) | 481, 533, 1412, 1484 |
| HinfI | GANTC | 5 cut(s) | 177, 1079, 1433, 1520, 1534 |
| HpaII | CCGG | 5 cut(s) | 97, 237, 265, 554, 1402 |
| HphI | GGTGA | 7 cut(s) | 65, 86, 114, 254, 282, 650, 1046 |
| Hpy166II | GTNNAC | 4 cut(s) | 31, 323, 728, 959 |
| Hpy188III | TCNNGA | 6 cut(s) | 232, 956, 1023, 1058, 1232, 1454 |
| Hpy8I | GTNNAC | 4 cut(s) | 31, 323, 728, 959 |
| Hpy99I | CGWCG | 7 cut(s) | 38, 41, 86, 114, 248, 254, 282 |
| HpyAV | CCTTC | 6 cut(s) | 44, 209, 355, 819, 1226, 1451 |
| HpyCH4III | ACNGT | 1 cut(s) | 475 |
| HpyCH4IV | ACGT | 4 cut(s) | 309, 411, 928, 1370 |
| HpyCH4V | TGCA | 9 cut(s) | 914, 926, 938, 990, 1076, 1200, 1308, 1357, 1418 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 548, 1206, 1301, 1402, 1411, 1424 |
| HpySE526I | ACGT | 4 cut(s) | 309, 411, 928, 1370 |
| Hsp92I | GRCGYC | 1 cut(s) | 894 |
| Hsp92II | CATG | 5 cut(s) | 371, 393, 433, 1114, 1381 |
| HspAI | GCGC | 1 cut(s) | 583 |
| Ksp22I | TGATCA | 1 cut(s) | 640 |
| Kzo9I | GATC | 7 cut(s) | 116, 149, 256, 284, 640, 836, 1015 |
| LmnI | GCTCC | 2 cut(s) | 142, 1009 |
| Lsp1109I | GCAGC | 1 cut(s) | 1184 |
| LweI | GCATC | 6 cut(s) | 110, 278, 306, 593, 877, 1282 |
| MaeI | CTAG | 2 cut(s) | 548, 564 |
| MaeII | ACGT | 4 cut(s) | 309, 411, 928, 1370 |
| MaeIII | GTNAC | 5 cut(s) | 53, 232, 443, 595, 802 |
| MalI | GATC | 7 cut(s) | 118, 151, 258, 286, 642, 838, 1017 |
| MboI | GATC | 7 cut(s) | 116, 149, 256, 284, 640, 836, 1015 |
| MfeI | CAATTG | 1 cut(s) | 756 |
| MflI | RGATCY | 1 cut(s) | 149 |
| MhlI | GDGCHC | 3 cut(s) | 868, 1194, 1591 |
| MlsI | TGGCCA | 1 cut(s) | 572 |
| MluCI | AATT | 9 cut(s) | 629, 695, 756, 815, 881, 1065, 1150, 1266, 1540 |
| MluNI | TGGCCA | 1 cut(s) | 572 |
| MlyI | GAGTC | 2 cut(s) | 1088, 1528 |
| MmeI | TCCRAC | 1 cut(s) | 154 |
| Mox20I | TGGCCA | 1 cut(s) | 572 |
| MroXI | GAANNNNTTC | 2 cut(s) | 963, 1267 |
| MscI | TGGCCA | 1 cut(s) | 572 |
| MseI | TTAA | 4 cut(s) | 819, 879, 1242, 1560 |
| Msp20I | TGGCCA | 1 cut(s) | 572 |
| MspI | CCGG | 5 cut(s) | 97, 237, 265, 554, 1402 |
| MspR9I | CCNGG | 6 cut(s) | 98, 126, 266, 294, 875, 1402 |
| MunI | CAATTG | 1 cut(s) | 756 |
| MvaI | CCWGG | 3 cut(s) | 126, 294, 875 |
| MvnI | CGCG | 1 cut(s) | 254 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 548, 1206, 1301, 1402, 1411, 1424 |
| NciI | CCSGG | 3 cut(s) | 98, 266, 1402 |
| NdeII | GATC | 7 cut(s) | 116, 149, 256, 284, 640, 836, 1015 |
| NlaIII | CATG | 5 cut(s) | 371, 393, 433, 1114, 1381 |
| NlaIV | GGNNCC | 3 cut(s) | 1005, 1589, 1590 |
| NmeAIII | GCCGAG | 1 cut(s) | 1490 |
| NmuCI | GTSAC | 4 cut(s) | 53, 232, 443, 595 |
| NspI | RCATGY | 1 cut(s) | 371 |
| NspV | TTCGAA | 1 cut(s) | 1572 |
| PciI | ACATGT | 1 cut(s) | 367 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 33, 45, 63, 306 |
| PdmI | GAANNNNTTC | 2 cut(s) | 963, 1267 |
| PfeI | GAWTC | 3 cut(s) | 177, 1433, 1520 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1512 |
| PkrI | GCNGC | 1 cut(s) | 1199 |
| PleI | GAGTC | 2 cut(s) | 1087, 1528 |
| PmaCI | CACGTG | 1 cut(s) | 929 |
| PmlI | CACGTG | 1 cut(s) | 929 |
| PpsI | GAGTC | 2 cut(s) | 1087, 1528 |
| Ppu21I | YACGTR | 2 cut(s) | 310, 929 |
| PscI | ACATGT | 1 cut(s) | 367 |
| Psp124BI | GAGCTC | 1 cut(s) | 1194 |
| Psp6I | CCWGG | 3 cut(s) | 124, 292, 873 |
| PspCI | CACGTG | 1 cut(s) | 929 |
| PspGI | CCWGG | 3 cut(s) | 124, 292, 873 |
| PspN4I | GGNNCC | 3 cut(s) | 1005, 1589, 1590 |
| PspOMI | GGGCCC | 1 cut(s) | 1587 |
| PspPI | GGNCC | 3 cut(s) | 1144, 1587, 1588 |
| PstI | CTGCAG | 1 cut(s) | 1202 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1082 |
| PsuI | RGATCY | 1 cut(s) | 149 |
| RsaI | GTAC | 5 cut(s) | 312, 855, 1169, 1184, 1399 |
| RsaNI | GTAC | 5 cut(s) | 311, 854, 1168, 1183, 1398 |
| SacI | GAGCTC | 1 cut(s) | 1194 |
| SaqAI | TTAA | 4 cut(s) | 819, 879, 1242, 1560 |
| SatI | GCNGC | 1 cut(s) | 1198 |
| Sau3AI | GATC | 7 cut(s) | 116, 149, 256, 284, 640, 836, 1015 |
| Sau96I | GGNCC | 3 cut(s) | 1144, 1587, 1588 |
| ScaI | AGTACT | 1 cut(s) | 1184 |
| SchI | GAGTC | 2 cut(s) | 1088, 1528 |
| ScrFI | CCNGG | 6 cut(s) | 98, 126, 266, 294, 875, 1402 |
| SduI | GDGCHC | 3 cut(s) | 868, 1194, 1591 |
| SfaNI | GCATC | 6 cut(s) | 110, 278, 306, 593, 877, 1282 |
| SfcI | CTRYAG | 2 cut(s) | 474, 1198 |
| SfuI | TTCGAA | 1 cut(s) | 1572 |
| SinI | GGWCC | 1 cut(s) | 1144 |
| SmlI | CTYRAG | 1 cut(s) | 1232 |
| SmoI | CTYRAG | 1 cut(s) | 1232 |
| Sse9I | AATT | 9 cut(s) | 629, 695, 756, 815, 881, 1065, 1150, 1266, 1540 |
| SsiI | CCGC | 5 cut(s) | 4, 140, 254, 636, 1475 |
| SspI | AATATT | 2 cut(s) | 1228, 1285 |
| SspMI | CTAG | 2 cut(s) | 548, 564 |
| SstI | GAGCTC | 1 cut(s) | 1194 |
| StyD4I | CCNGG | 6 cut(s) | 96, 124, 264, 292, 873, 1400 |
| StyI | CCWWGG | 1 cut(s) | 1592 |
| TaaI | ACNGT | 1 cut(s) | 475 |
| TaiI | ACGT | 4 cut(s) | 312, 414, 931, 1373 |
| TaqI | TCGA | 6 cut(s) | 66, 104, 190, 272, 300, 1572 |
| TasI | AATT | 9 cut(s) | 629, 695, 756, 815, 881, 1065, 1150, 1266, 1540 |
| TatI | WGTACW | 1 cut(s) | 1182 |
| TfiI | GAWTC | 3 cut(s) | 177, 1433, 1520 |
| Tru1I | TTAA | 4 cut(s) | 819, 879, 1242, 1560 |
| Tru9I | TTAA | 4 cut(s) | 819, 879, 1242, 1560 |
| TscAI | CASTG | 3 cut(s) | 346, 512, 604 |
| TseFI | GTSAC | 4 cut(s) | 53, 232, 443, 595 |
| TseI | GCWGC | 1 cut(s) | 1197 |
| Tsp45I | GTSAC | 4 cut(s) | 53, 232, 443, 595 |
| TspDTI | ATGAA | 7 cut(s) | 84, 378, 446, 696, 1127, 1208, 1394 |
| TspRI | CASTG | 3 cut(s) | 346, 512, 604 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1512 |
| VpaK11BI | GGWCC | 1 cut(s) | 1144 |
| XapI | RAATTY | 4 cut(s) | 629, 695, 815, 1150 |
| XceI | RCATGY | 1 cut(s) | 371 |
| XmnI | GAANNNNTTC | 2 cut(s) | 963, 1267 |
| XspI | CTAG | 2 cut(s) | 548, 564 |
| ZrmI | AGTACT | 1 cut(s) | 1184 |