Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022203.1

Orthogroup ID

OG0001540

Physical Location & Seq

Genomic Coordinates Reverse (-)

16485 .. 18348

Gene Structure 1864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022203.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

atggatagagcgaagaagcttgaagccaatctagcaccggagttccctagagtggccaaagttatgcgcccatcaaatgtcactggatgcttctgtcttagtcttcctaagaaattttgcggtgatcatttgccaaagcaggatacaatgattgttttagaagatgaaagtgggagagaattccaaacgaaatatcttgtgggaaaggctggacttagtgctggatggagaggattttcaattgctcacaagttattggctggagatgttgtagttttccagcgagttactccttccaaatttaaggtgtatattgttagatcaagtggtttagatgtggcagactgtgctcttggccttgttaaattagatgctggcatcagacaaatggatactgcaaactttactgcacgtgaaactgcaaaagtgtccattcctcgtgaacctattcaaaagaagaacaccatagcctgcaatacctcattggctcaaatgtcagatcgctctggaaatgatggtgaagattttggttctgaagttctggatggaattaggcttgcagagtctgttatccctttcaaagaagtgaaaggcatggaaaactttgatgtcattatcaatggtttggtcctaaattctgagttttcaaagtaccatttgaccaagtactatgagctctgctgcagtcaaagctcgttccttcataagaatattcttgagggtcttaacttcaaactggttgctggaataatttctgagacaatcaatatttcagatgccattagagcctgcaagattaccacttcagagtgtgattttttgacttgggataagactttgcaagcctctgagacgttaggcatgaatgttggcttcctgcgtacccggctaaacaagcttgcaagccttgcttcagaatcaaaacgatatagtaatcttgaaggaggccgagcagaagcggaagtaaagcttttgggggaaaaggagaacacaacttggtttgattctgagattgagactcataatttgttgtttgagaggcttaaagctatgttcgaagaagtggctagggccccttggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

360

Amino Acids

40.06

Weight (kDa)

6.96

Isoelectric Point (pI)

33.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06300 FvH4_2g06310
malus_domestica	MD00G1040300.v1.1 MD05G1079100.v1.1 MD05G1079200.v1.1 MD10G1093000.v1.1 MD10G1093200.v1.1
prunus_persica	Prupe.8G122600_v2.0.a1 Prupe.8G122700_v2.0.a1 Prupe.8G122700_v2.0.a1 Prupe.8G122700_v2.0.a1 Prupe.8G122700_v2.0.a1 Prupe.8G122800_v2.0.a1 Prupe.8G122800_v2.0.a1 Prupe.8G122800_v2.0.a1 Prupe.8G122800_v2.0.a1
pyrus_communis	pycom05g07220 pycom05g07230 pycom10g07650
rosa_chinensis	RchiOBHm_Chr6g0256811 RchiOBHm_Chr6g0256821 RchiOBHm_Chr6g0256841
rosa_laevigata	RLG00000014649 RLG00000014650 RLG00000014652
rosa_multiflora	Rmu_sc0003076.1_g000020 Rmu_sc0003076.1_g000021 Rmu_sc0003076.1_g000024 Rmu_sc0022203.1_g000003
rosa_roxburghii	Rroxscaffold_7G00208200 Rroxscaffold_7G00208220
rosa_rugosa	Rorug05G0577300 Rorug05G0577500 Rorug05G0577600 Rorug05G0577700 Rorug05G0577800
rosa_samantha	Rh6AG095900 Rh6AG096100 Rh6AG096200 Rh6BG087000 Rh6BG087200 Rh6BG087300 Rh6CG083000 Rh6CG083200 Rh6CG083300 Rh6DG078900 Rh6DG079000 Rh6DG079100
rosa_wichuraiana	Rw6G008170 Rw6G008180 Rw6G008190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	120, 959
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	4 cut(s)	113, 179, 299, 634
AcuI	CTGAAG	3 cut(s)	555, 789, 897
AcvI	CACGTG	1 cut(s)	413
AfaI	GTAC	3 cut(s)	653, 668, 883
AfiI	CCNNNNNNNGG	1 cut(s)	52
AgsI	TTSAA	7 cut(s)	23, 240, 452, 580, 648, 733, 941
AluBI	AGCT	6 cut(s)	19, 676, 693, 898, 970, 1049
AluI	AGCT	6 cut(s)	19, 676, 693, 898, 970, 1049
Alw21I	GWGCWC	2 cut(s)	352, 678
Alw26I	GTCTC	3 cut(s)	752, 845, 1010
AlwNI	CAGNNNCTG	1 cut(s)	566
AoxI	GGCC	4 cut(s)	54, 355, 946, 1071
ApaI	GGGCCC	1 cut(s)	1075
ApeKI	GCWGC	1 cut(s)	681
ApoI	RAATTY	4 cut(s)	113, 179, 299, 634
ArsI	GACNNNNNNTTYG	2 cut(s)	1009, 1041
Asp700I	GAANNNNTTC	2 cut(s)	447, 751
AspLEI	GCGC	1 cut(s)	69
AspS9I	GGNCC	3 cut(s)	628, 1071, 1072
AsuC2I	CCSGG	1 cut(s)	886
AsuHPI	GGTGA	2 cut(s)	134, 530
AsuII	TTCGAA	1 cut(s)	1056
AvaII	GGWCC	1 cut(s)	628
BaeGI	GKGCMC	1 cut(s)	1075
BalI	TGGCCA	1 cut(s)	56
BanII	GRGCYC	2 cut(s)	678, 1075
BauI	CACGAG	1 cut(s)	438
BbrPI	CACGTG	1 cut(s)	413
BbsI	GAAGAC	1 cut(s)	95
Bbv12I	GWGCWC	2 cut(s)	352, 678
BbvI	GCAGC	1 cut(s)	668
BccI	CCATC	4 cut(s)	79, 219, 509, 539
BciVI	GTATCC	2 cut(s)	136, 385
BclI	TGATCA	1 cut(s)	124
BcnI	CCSGG	1 cut(s)	886
BcoDI	GTCTC	3 cut(s)	752, 845, 1010
BfaI	CTAG	3 cut(s)	32, 48, 1068
BfmI	CTRYAG	1 cut(s)	682
BfuI	GTATCC	2 cut(s)	136, 385
BisI	GCNGC	1 cut(s)	682
BlsI	GCNGC	1 cut(s)	683
BmcAI	AGTACT	1 cut(s)	668
Bme1390I	CCNGG	1 cut(s)	886
Bme18I	GGWCC	1 cut(s)	628
BmgT120I	GGNCC	3 cut(s)	628, 1071, 1072
BmiI	GGNNCC	2 cut(s)	1073, 1074
BmrFI	CCNGG	1 cut(s)	886
BmsI	GCATC	4 cut(s)	77, 361, 387, 766
BpiI	GAAGAC	1 cut(s)	95
BpmI	CTGGAG	1 cut(s)	282
Bpu14I	TTCGAA	1 cut(s)	1056
BpuEI	CTTGAG	1 cut(s)	737
BpuMI	CCSGG	1 cut(s)	886
BsaAI	YACGTR	1 cut(s)	413
BsaJI	CCNNGG	1 cut(s)	1076
BsaWI	WCCGGW	1 cut(s)	37
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse1I	ACTGG	2 cut(s)	88, 741
BseDI	CCNNGG	1 cut(s)	1076
BseGI	GGATG	3 cut(s)	92, 230, 550
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMII	CTCAG	4 cut(s)	630, 747, 840, 999
BseNI	ACTGG	2 cut(s)	88, 741
BseSI	GKGCMC	1 cut(s)	1075
BseXI	GCAGC	1 cut(s)	668
BsgI	GTGCAG	1 cut(s)	393
BshFI	GGCC	4 cut(s)	56, 357, 948, 1073
BsiHKAI	GWGCWC	2 cut(s)	352, 678
BsiSI	CCGG	2 cut(s)	38, 886
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmAI	GTCTC	3 cut(s)	752, 845, 1010
BsmBI	CGTCTC	1 cut(s)	845
BsnI	GGCC	4 cut(s)	56, 357, 948, 1073
Bsp119I	TTCGAA	1 cut(s)	1056
Bsp120I	GGGCCC	1 cut(s)	1071
Bsp1286I	GDGCHC	3 cut(s)	352, 678, 1075
Bsp143I	GATC	3 cut(s)	124, 320, 499
BspACI	CCGC	2 cut(s)	120, 959
BspANI	GGCC	4 cut(s)	56, 357, 948, 1073
BspCNI	CTCAG	4 cut(s)	631, 748, 841, 1000
BspLI	GGNNCC	2 cut(s)	1073, 1074
BspMAI	CTGCAG	1 cut(s)	686
BspT104I	TTCGAA	1 cut(s)	1056
BsrI	ACTGG	2 cut(s)	88, 741
BssECI	CCNNGG	1 cut(s)	1076
BssMI	GATC	3 cut(s)	124, 320, 499
BssSI	CACGAG	1 cut(s)	438
BssT1I	CCWWGG	1 cut(s)	1076
Bst2BI	CACGAG	1 cut(s)	438
Bst4CI	ACNGT	1 cut(s)	347
BstAPI	GCANNNNNTGC	2 cut(s)	347, 908
BstBAI	YACGTR	1 cut(s)	413
BstBI	TTCGAA	1 cut(s)	1056
BstC8I	GCNNGC	7 cut(s)	376, 472, 558, 790, 843, 900, 904
BstDEI	CTNAG	7 cut(s)	98, 108, 215, 639, 756, 849, 1008
BstF5I	GGATG	3 cut(s)	92, 230, 550
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	3 cut(s)	127, 323, 502
BstMAI	GTCTC	3 cut(s)	752, 845, 1010
BstMBI	GATC	3 cut(s)	124, 320, 499
BstMWI	GCNNNNNNNGC	7 cut(s)	32, 347, 690, 785, 886, 895, 908
BstSCI	CCNGG	1 cut(s)	884
BstSFI	CTRYAG	1 cut(s)	682
BstSLI	GKGCMC	1 cut(s)	1075
BstV1I	GCAGC	1 cut(s)	668
BstV2I	GAAGAC	1 cut(s)	95
BsuI	GTATCC	2 cut(s)	136, 385
BsuRI	GGCC	4 cut(s)	56, 357, 948, 1073
BtsCI	GGATG	3 cut(s)	92, 230, 550
BtsIMutI	CAGTG	1 cut(s)	81
Cac8I	GCNNGC	7 cut(s)	376, 472, 558, 790, 843, 900, 904
CaiI	CAGNNNCTG	1 cut(s)	566
CfoI	GCGC	1 cut(s)	69
Cfr13I	GGNCC	3 cut(s)	628, 1071, 1072
Csp6I	GTAC	3 cut(s)	652, 667, 882
CviAII	CATG	2 cut(s)	595, 862
CviQI	GTAC	3 cut(s)	652, 667, 882
DdeI	CTNAG	7 cut(s)	98, 108, 215, 639, 756, 849, 1008
DpnI	GATC	3 cut(s)	126, 322, 501
DpnII	GATC	3 cut(s)	124, 320, 499
EaeI	YGGCCR	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	676
Eco130I	CCWWGG	1 cut(s)	1076
Eco24I	GRGCYC	2 cut(s)	678, 1075
Eco47I	GGWCC	1 cut(s)	628
Eco53kI	GAGCTC	1 cut(s)	676
Eco57I	CTGAAG	3 cut(s)	555, 789, 897
Eco72I	CACGTG	1 cut(s)	413
EcoICRI	GAGCTC	1 cut(s)	676
EcoO109I	RGGNCCY	2 cut(s)	1071, 1072
EcoRI	GAATTC	1 cut(s)	179
EcoT14I	CCWWGG	1 cut(s)	1076
EcoT38I	GRGCYC	2 cut(s)	678, 1075
ErhI	CCWWGG	1 cut(s)	1076
Esp3I	CGTCTC	1 cut(s)	845
FaeI	CATG	2 cut(s)	598, 865
FalI	AAGNNNNNCTT	4 cut(s)	895, 927, 954, 986
FatI	CATG	2 cut(s)	594, 861
FbaI	TGATCA	1 cut(s)	124
Fnu4HI	GCNGC	1 cut(s)	682
FokI	GGATG	3 cut(s)	99, 237, 557
FriOI	GRGCYC	2 cut(s)	678, 1075
Fsp4HI	GCNGC	1 cut(s)	682
FspBI	CTAG	3 cut(s)	32, 48, 1068
GlaI	GCGC	1 cut(s)	68
GluI	GCNGC	1 cut(s)	682
GsuI	CTGGAG	1 cut(s)	282
HaeIII	GGCC	4 cut(s)	56, 357, 948, 1073
HapII	CCGG	2 cut(s)	38, 886
HhaI	GCGC	1 cut(s)	69
Hin1II	CATG	2 cut(s)	598, 865
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HindIII	AAGCTT	3 cut(s)	17, 896, 968
HinfI	GANTC	4 cut(s)	563, 917, 1004, 1018
HpaII	CCGG	2 cut(s)	38, 886
HphI	GGTGA	2 cut(s)	134, 530
Hpy166II	GTNNAC	1 cut(s)	443
Hpy188III	TCNNGA	5 cut(s)	440, 507, 542, 716, 938
Hpy8I	GTNNAC	1 cut(s)	443
HpyAV	CCTTC	3 cut(s)	303, 710, 935
HpyCH4III	ACNGT	1 cut(s)	347
HpyCH4IV	ACGT	2 cut(s)	412, 854
HpyCH4V	TGCA	9 cut(s)	398, 410, 422, 474, 560, 684, 792, 841, 902
HpyF10VI	GCNNNNNNNGC	7 cut(s)	32, 347, 690, 785, 886, 895, 908
HpyF3I	CTNAG	7 cut(s)	98, 108, 215, 639, 756, 849, 1008
HpySE526I	ACGT	2 cut(s)	412, 854
Hsp92II	CATG	2 cut(s)	598, 865
HspAI	GCGC	1 cut(s)	67
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	3 cut(s)	124, 320, 499
Lsp1109I	GCAGC	1 cut(s)	668
LweI	GCATC	4 cut(s)	77, 361, 387, 766
MaeI	CTAG	3 cut(s)	32, 48, 1068
MaeII	ACGT	2 cut(s)	412, 854
MaeIII	GTNAC	2 cut(s)	79, 286
MalI	GATC	3 cut(s)	126, 322, 501
MboI	GATC	3 cut(s)	124, 320, 499
MboII	GAAGA	6 cut(s)	25, 95, 173, 469, 533, 1070
MfeI	CAATTG	1 cut(s)	240
MhlI	GDGCHC	3 cut(s)	352, 678, 1075
MlsI	TGGCCA	1 cut(s)	56
MluCI	AATT	9 cut(s)	113, 179, 240, 299, 365, 549, 634, 750, 1024
MluNI	TGGCCA	1 cut(s)	56
MlyI	GAGTC	2 cut(s)	572, 1012
MnlI	CCTC	7 cut(s)	224, 447, 490, 712, 856, 938, 1032
Mox20I	TGGCCA	1 cut(s)	56
MroXI	GAANNNNTTC	2 cut(s)	447, 751
MscI	TGGCCA	1 cut(s)	56
MseI	TTAA	4 cut(s)	303, 363, 726, 1044
Msp20I	TGGCCA	1 cut(s)	56
MspI	CCGG	2 cut(s)	38, 886
MspR9I	CCNGG	1 cut(s)	886
MunI	CAATTG	1 cut(s)	240
MwoI	GCNNNNNNNGC	7 cut(s)	32, 347, 690, 785, 886, 895, 908
NciI	CCSGG	1 cut(s)	886
NdeII	GATC	3 cut(s)	124, 320, 499
NlaIII	CATG	2 cut(s)	598, 865
NlaIV	GGNNCC	2 cut(s)	1073, 1074
NmeAIII	GCCGAG	1 cut(s)	974
NmuCI	GTSAC	1 cut(s)	79
NspV	TTCGAA	1 cut(s)	1056
PdmI	GAANNNNTTC	2 cut(s)	447, 751
PfeI	GAWTC	2 cut(s)	917, 1004
PkrI	GCNGC	1 cut(s)	683
PleI	GAGTC	2 cut(s)	571, 1012
PmaCI	CACGTG	1 cut(s)	413
PmlI	CACGTG	1 cut(s)	413
PpsI	GAGTC	2 cut(s)	571, 1012
Ppu21I	YACGTR	1 cut(s)	413
Psp124BI	GAGCTC	1 cut(s)	678
PspCI	CACGTG	1 cut(s)	413
PspN4I	GGNNCC	2 cut(s)	1073, 1074
PspOMI	GGGCCC	1 cut(s)	1071
PspPI	GGNCC	3 cut(s)	628, 1071, 1072
PstI	CTGCAG	1 cut(s)	686
PstNI	CAGNNNCTG	1 cut(s)	566
RsaI	GTAC	3 cut(s)	653, 668, 883
RsaNI	GTAC	3 cut(s)	652, 667, 882
SacI	GAGCTC	1 cut(s)	678
SaqAI	TTAA	4 cut(s)	303, 363, 726, 1044
SatI	GCNGC	1 cut(s)	682
Sau3AI	GATC	3 cut(s)	124, 320, 499
Sau96I	GGNCC	3 cut(s)	628, 1071, 1072
ScaI	AGTACT	1 cut(s)	668
SchI	GAGTC	2 cut(s)	572, 1012
ScrFI	CCNGG	1 cut(s)	886
SduI	GDGCHC	3 cut(s)	352, 678, 1075
SfaNI	GCATC	4 cut(s)	77, 361, 387, 766
SfcI	CTRYAG	1 cut(s)	682
SfuI	TTCGAA	1 cut(s)	1056
SinI	GGWCC	1 cut(s)	628
SmlI	CTYRAG	1 cut(s)	716
SmoI	CTYRAG	1 cut(s)	716
Sse9I	AATT	9 cut(s)	113, 179, 240, 299, 365, 549, 634, 750, 1024
SsiI	CCGC	2 cut(s)	120, 959
SspI	AATATT	2 cut(s)	712, 769
SspMI	CTAG	3 cut(s)	32, 48, 1068
SstI	GAGCTC	1 cut(s)	678
StyD4I	CCNGG	1 cut(s)	884
StyI	CCWWGG	1 cut(s)	1076
TaaI	ACNGT	1 cut(s)	347
TaiI	ACGT	2 cut(s)	415, 857
TaqI	TCGA	1 cut(s)	1056
TasI	AATT	9 cut(s)	113, 179, 240, 299, 365, 549, 634, 750, 1024
TatI	WGTACW	1 cut(s)	666
TfiI	GAWTC	2 cut(s)	917, 1004
Tru1I	TTAA	4 cut(s)	303, 363, 726, 1044
Tru9I	TTAA	4 cut(s)	303, 363, 726, 1044
TscAI	CASTG	1 cut(s)	88
TseFI	GTSAC	1 cut(s)	79
TseI	GCWGC	1 cut(s)	681
Tsp45I	GTSAC	1 cut(s)	79
TspDTI	ATGAA	3 cut(s)	180, 692, 878
TspRI	CASTG	1 cut(s)	88
VpaK11BI	GGWCC	1 cut(s)	628
XapI	RAATTY	4 cut(s)	113, 179, 299, 634
XmnI	GAANNNNTTC	2 cut(s)	447, 751
XspI	CTAG	3 cut(s)	32, 48, 1068
ZrmI	AGTACT	1 cut(s)	668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.