Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001540

Physical Location & Seq

Genomic Coordinates Reverse (-)

14160888 .. 14164305

Gene Structure 3418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG095900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGAAACCCCAATATTTTACCAGTAGTCTTAAACCAAAGAGATTAAAGAGAGCGACAGAAGAAAGCGTATATGACACTTCCCAAGCTCAGCTCTCTGTTCTGGAAAGAGCAAAAGAGATTGAAGCAAGTTTAGCACCAGCGTTTCCTACACTGATCAAAGTTATGCTACCGTCACATGTTACGGGAGGATTCTGGCTTGGTCTTCCTAAGAAATTCTGTTGTGTGCATTTGCCAAAACATGACACGATGATTGCTTTGGAAGATGACAGTGGGGAAGAATACCAAACCAAATATCTTGCGGACAAGGTTGGACTGAGTGGTGGATGGAGAGGCTTTTCGATTGCTCACAAGTTAGTGGAGGGAGATGTGGTAGTTTTCCATCGTGTCACTCCTTCAAAGTTCAAGGTGTATATTGTTCGATCAAAGGGTTCAGATGAATCAGATTGCTCTCTTGGCCTTATGAACCTAGGTGTTTGCATTAAAGAAATGGATACTGGGGACATTACTACTTGTGAAGGGGCAGAATATGAGGATATTAGACCTATTTCAGTGGAAAATCCTCAAAACTATAACACCATAGCCTGCAATACTAAATCCAGTCCGATTGCTGATCTGTCTGAAAATGATACTGGAAGTCTTGGTTCTGAAGTGTTTGATGGAATTAGACTCGCAGAGTCTGTGATTCCTTTCAAAGAAGTGAGCTCCTTGGAGAACTTCAACATCATCGTCGATGGTTTCATCATAAATTCCGAGTTACCCAAACCAGTTTTGGCGAAGTACTATGACCTTTGCTGCAGTCAAAACGCATACCTTCATGAACATCTTCTGGATGGTCTTAATTGGCAACTCATAACCGGGGCAATTTCTGAAATAACCACCATCGCAGAAGGCATAAGAACCTGCAAGGCTTCCACATTAGAATGTAATTTTCCAACTTGGAATAAGACTCTACAGGCCTTTGAGGTGTTTGGCATGAATGTTGGTTTCCTGCGTACCCGGCTAGACAAGCTTGCAAGTCTCGCTTCAGAGTCAAAAAGAGGTAAAGAGGCAAGACATGAAAGGGAACAAGCAGAAGTAGAGATGAGAACCTTGGAGGCAAAGCTGTTGGAAGTGAAAAGGACCATAAGCAGGCTGTTGGAAGTAGAGACTGAGACTCAAAATGTGAGTACAGAAAAGCTTGAGGATATGCTCCAACAAGTGGCTAAGGCCCCTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

405

Amino Acids

45.22

Weight (kDa)

5.33

Isoelectric Point (pI)

34.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	52 - 140	2.8e-15	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06300 FvH4_2g06310
malus_domestica	MD00G1040300.v1.1 MD05G1079100.v1.1 MD05G1079200.v1.1 MD10G1093000.v1.1 MD10G1093200.v1.1
prunus_persica	Prupe.8G122600_v2.0.a1 Prupe.8G122700_v2.0.a1 Prupe.8G122700_v2.0.a1 Prupe.8G122700_v2.0.a1 Prupe.8G122700_v2.0.a1 Prupe.8G122800_v2.0.a1 Prupe.8G122800_v2.0.a1 Prupe.8G122800_v2.0.a1 Prupe.8G122800_v2.0.a1
pyrus_communis	pycom05g07220 pycom05g07230 pycom10g07650
rosa_chinensis	RchiOBHm_Chr6g0256811 RchiOBHm_Chr6g0256821 RchiOBHm_Chr6g0256841
rosa_laevigata	RLG00000014649 RLG00000014650 RLG00000014652
rosa_multiflora	Rmu_sc0003076.1_g000020 Rmu_sc0003076.1_g000021 Rmu_sc0003076.1_g000024 Rmu_sc0022203.1_g000003
rosa_roxburghii	Rroxscaffold_7G00208200 Rroxscaffold_7G00208220
rosa_rugosa	Rorug05G0577300 Rorug05G0577500 Rorug05G0577600 Rorug05G0577700 Rorug05G0577800
rosa_samantha	Rh6AG095900 Rh6AG096100 Rh6AG096200 Rh6BG087000 Rh6BG087200 Rh6BG087300 Rh6CG083000 Rh6CG083200 Rh6CG083300 Rh6DG078900 Rh6DG079000 Rh6DG079100
rosa_wichuraiana	Rw6G008170 Rw6G008180 Rw6G008190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	908
AccB7I	CCANNNNNTGG	1 cut(s)	1198
AciI	CCGC	1 cut(s)	299
AcsI	RAATTY	2 cut(s)	212, 745
AcuI	CTGAAG	2 cut(s)	666, 1008
AfaI	GTAC	3 cut(s)	779, 994, 1168
AfiI	CCNNNNNNNGG	2 cut(s)	1128, 1198
AflIII	ACRYGT	1 cut(s)	175
AgsI	TTSAA	5 cut(s)	122, 396, 403, 691, 718
AluBI	AGCT	6 cut(s)	86, 91, 702, 1009, 1102, 1177
AluI	AGCT	6 cut(s)	86, 91, 702, 1009, 1102, 1177
Alw21I	GWGCWC	1 cut(s)	704
Alw26I	GTCTC	3 cut(s)	1022, 1139, 1145
AlwNI	CAGNNNCTG	1 cut(s)	677
AoxI	GGCC	3 cut(s)	454, 954, 1206
ApeKI	GCWGC	1 cut(s)	792
ApoI	RAATTY	2 cut(s)	212, 745
Asp700I	GAANNNNTTC	1 cut(s)	822
AspA2I	CCTAGG	1 cut(s)	466
AspS9I	GGNCC	2 cut(s)	1119, 1207
AsuC2I	CCSGG	2 cut(s)	856, 997
AvaII	GGWCC	1 cut(s)	1119
AvrII	CCTAGG	1 cut(s)	466
BanII	GRGCYC	1 cut(s)	704
BbsI	GAAGAC	1 cut(s)	194
Bbv12I	GWGCWC	1 cut(s)	704
BbvI	GCAGC	1 cut(s)	779
BccI	CCATC	6 cut(s)	318, 387, 650, 725, 824, 887
BciVI	GTATCC	1 cut(s)	484
BclI	TGATCA	1 cut(s)	153
BcnI	CCSGG	2 cut(s)	856, 997
BcoDI	GTCTC	3 cut(s)	1022, 1139, 1145
BfaI	CTAG	2 cut(s)	467, 1001
BfmI	CTRYAG	2 cut(s)	793, 950
BfuAI	ACCTGC	1 cut(s)	908
BfuI	GTATCC	1 cut(s)	484
BisI	GCNGC	1 cut(s)	793
BlnI	CCTAGG	1 cut(s)	466
BlpI	GCTNAGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	794
BmcAI	AGTACT	1 cut(s)	779
Bme1390I	CCNGG	2 cut(s)	856, 997
Bme18I	GGWCC	1 cut(s)	1119
BmgT120I	GGNCC	2 cut(s)	1119, 1207
BmiI	GGNNCC	1 cut(s)	1209
BmrFI	CCNGG	2 cut(s)	856, 997
BmrI	ACTGGG	1 cut(s)	504
BmuI	ACTGGG	1 cut(s)	504
BpiI	GAAGAC	1 cut(s)	194
Bpu10I	CCTNAGC	1 cut(s)	1203
Bpu1102I	GCTNAGC	1 cut(s)	87
BpuEI	CTTGAG	1 cut(s)	1199
BpuMI	CCSGG	2 cut(s)	856, 997
BsaJI	CCNNGG	5 cut(s)	466, 705, 855, 1089, 1211
BsaXI	ACNNNNNCTCC	2 cut(s)	354, 384
Bsc4I	CCNNNNNNNGG	2 cut(s)	1128, 1198
Bse1I	ACTGG	5 cut(s)	21, 499, 597, 634, 764
BseDI	CCNNGG	5 cut(s)	466, 705, 855, 1089, 1211
BseGI	GGATG	2 cut(s)	329, 835
BseLI	CCNNNNNNNGG	2 cut(s)	1128, 1198
BseMII	CTCAG	3 cut(s)	101, 305, 1140
BseNI	ACTGG	5 cut(s)	21, 499, 597, 634, 764
BseXI	GCAGC	1 cut(s)	779
BshFI	GGCC	3 cut(s)	456, 956, 1208
BsiHKAI	GWGCWC	1 cut(s)	704
BsiSI	CCGG	2 cut(s)	855, 997
BslFI	GGGAC	1 cut(s)	512
BslI	CCNNNNNNNGG	2 cut(s)	1128, 1198
BsmAI	GTCTC	3 cut(s)	1022, 1139, 1145
BsmFI	GGGAC	1 cut(s)	512
BsnI	GGCC	3 cut(s)	456, 956, 1208
Bsp1286I	GDGCHC	1 cut(s)	704
Bsp143I	GATC	3 cut(s)	153, 419, 610
Bsp1720I	GCTNAGC	1 cut(s)	87
BspACI	CCGC	1 cut(s)	299
BspANI	GGCC	3 cut(s)	456, 956, 1208
BspCNI	CTCAG	3 cut(s)	100, 306, 1141
BspHI	TCATGA	1 cut(s)	814
BspLI	GGNNCC	1 cut(s)	1209
BspMAI	CTGCAG	1 cut(s)	797
BspMI	ACCTGC	1 cut(s)	908
BsrI	ACTGG	5 cut(s)	21, 499, 597, 634, 764
BssECI	CCNNGG	5 cut(s)	466, 705, 855, 1089, 1211
BssMI	GATC	3 cut(s)	153, 419, 610
BssT1I	CCWWGG	4 cut(s)	466, 705, 1089, 1211
Bst4CI	ACNGT	2 cut(s)	171, 269
BstC8I	GCNNGC	3 cut(s)	583, 1011, 1130
BstDEI	CTNAG	5 cut(s)	87, 207, 314, 1149, 1203
BstF5I	GGATG	2 cut(s)	329, 835
BstKTI	GATC	3 cut(s)	156, 422, 613
BstMAI	GTCTC	3 cut(s)	1022, 1139, 1145
BstMBI	GATC	3 cut(s)	153, 419, 610
BstMWI	GCNNNNNNNGC	5 cut(s)	131, 453, 997, 1006, 1019
BstNSI	RCATGY	1 cut(s)	179
BstSCI	CCNGG	2 cut(s)	854, 995
BstSFI	CTRYAG	2 cut(s)	793, 950
BstV1I	GCAGC	1 cut(s)	779
BstV2I	GAAGAC	1 cut(s)	194
BsuI	GTATCC	1 cut(s)	484
BsuRI	GGCC	3 cut(s)	456, 956, 1208
BtgZI	GCGATG	1 cut(s)	865
BtsCI	GGATG	2 cut(s)	329, 835
BtsIMutI	CAGTG	3 cut(s)	149, 274, 555
BveI	ACCTGC	1 cut(s)	908
Cac8I	GCNNGC	3 cut(s)	583, 1011, 1130
CaiI	CAGNNNCTG	1 cut(s)	677
CciI	TCATGA	1 cut(s)	814
Cfr13I	GGNCC	2 cut(s)	1119, 1207
Csp6I	GTAC	3 cut(s)	778, 993, 1167
CviAII	CATG	5 cut(s)	176, 239, 815, 973, 1055
CviQI	GTAC	3 cut(s)	778, 993, 1167
DdeI	CTNAG	5 cut(s)	87, 207, 314, 1149, 1203
DpnI	GATC	3 cut(s)	155, 421, 612
DpnII	GATC	3 cut(s)	153, 419, 610
Ecl136II	GAGCTC	1 cut(s)	702
Eco130I	CCWWGG	4 cut(s)	466, 705, 1089, 1211
Eco147I	AGGCCT	1 cut(s)	956
Eco24I	GRGCYC	1 cut(s)	704
Eco47I	GGWCC	1 cut(s)	1119
Eco53kI	GAGCTC	1 cut(s)	702
Eco57I	CTGAAG	2 cut(s)	666, 1008
EcoICRI	GAGCTC	1 cut(s)	702
EcoO109I	RGGNCCY	1 cut(s)	1207
EcoT14I	CCWWGG	4 cut(s)	466, 705, 1089, 1211
EcoT38I	GRGCYC	1 cut(s)	704
ErhI	CCWWGG	4 cut(s)	466, 705, 1089, 1211
FaeI	CATG	5 cut(s)	179, 242, 818, 976, 1058
FalI	AAGNNNNNCTT	2 cut(s)	1006, 1038
FaqI	GGGAC	1 cut(s)	512
FatI	CATG	5 cut(s)	175, 238, 814, 972, 1054
FbaI	TGATCA	1 cut(s)	153
Fnu4HI	GCNGC	1 cut(s)	793
FokI	GGATG	2 cut(s)	336, 842
FriOI	GRGCYC	1 cut(s)	704
Fsp4HI	GCNGC	1 cut(s)	793
FspBI	CTAG	2 cut(s)	467, 1001
GluI	GCNGC	1 cut(s)	793
HaeIII	GGCC	3 cut(s)	456, 956, 1208
HapII	CCGG	2 cut(s)	855, 997
Hin1II	CATG	5 cut(s)	179, 242, 818, 976, 1058
HindIII	AAGCTT	2 cut(s)	1007, 1175
HinfI	GANTC	8 cut(s)	189, 437, 666, 674, 682, 946, 1028, 1153
HpaII	CCGG	2 cut(s)	855, 997
Hpy188I	TCNGA	8 cut(s)	433, 442, 603, 619, 646, 751, 868, 1027
Hpy188III	TCNNGA	3 cut(s)	101, 815, 827
Hpy99I	CGWCG	1 cut(s)	731
HpyAV	CCTTC	4 cut(s)	402, 509, 821, 881
HpyCH4III	ACNGT	2 cut(s)	171, 269
HpyCH4V	TGCA	6 cut(s)	226, 477, 585, 795, 903, 1013
HpyF10VI	GCNNNNNNNGC	5 cut(s)	131, 453, 997, 1006, 1019
HpyF3I	CTNAG	5 cut(s)	87, 207, 314, 1149, 1203
Hsp92II	CATG	5 cut(s)	179, 242, 818, 976, 1058
Ksp22I	TGATCA	1 cut(s)	153
Kzo9I	GATC	3 cut(s)	153, 419, 610
LmnI	GCTCC	2 cut(s)	707, 1194
Lsp1109I	GCAGC	1 cut(s)	779
MaeI	CTAG	2 cut(s)	467, 1001
MaeIII	GTNAC	4 cut(s)	171, 178, 385, 753
MalI	GATC	3 cut(s)	155, 421, 612
MboI	GATC	3 cut(s)	153, 419, 610
MboII	GAAGA	5 cut(s)	71, 194, 272, 287, 815
MhlI	GDGCHC	1 cut(s)	704
MluCI	AATT	6 cut(s)	212, 660, 745, 838, 861, 925
MlyI	GAGTC	5 cut(s)	660, 683, 940, 1037, 1147
MmeI	TCCRAC	5 cut(s)	289, 956, 1086, 1116, 1216
MroXI	GAANNNNTTC	1 cut(s)	822
MseI	TTAA	4 cut(s)	30, 44, 480, 837
MslI	CAYNNNNRTG	1 cut(s)	919
MspI	CCGG	2 cut(s)	855, 997
MspR9I	CCNGG	2 cut(s)	856, 997
MwoI	GCNNNNNNNGC	5 cut(s)	131, 453, 997, 1006, 1019
NciI	CCSGG	2 cut(s)	856, 997
NdeII	GATC	3 cut(s)	153, 419, 610
NlaIII	CATG	5 cut(s)	179, 242, 818, 976, 1058
NlaIV	GGNNCC	1 cut(s)	1209
NmuCI	GTSAC	2 cut(s)	171, 385
NspI	RCATGY	1 cut(s)	179
PagI	TCATGA	1 cut(s)	814
PceI	AGGCCT	1 cut(s)	956
PciI	ACATGT	1 cut(s)	175
PdmI	GAANNNNTTC	1 cut(s)	822
PfeI	GAWTC	3 cut(s)	189, 437, 682
PflMI	CCANNNNNTGG	1 cut(s)	1198
PkrI	GCNGC	1 cut(s)	794
PleI	GAGTC	5 cut(s)	660, 682, 940, 1036, 1147
PpsI	GAGTC	5 cut(s)	660, 682, 940, 1036, 1147
PscI	ACATGT	1 cut(s)	175
Psp124BI	GAGCTC	1 cut(s)	704
PspN4I	GGNNCC	1 cut(s)	1209
PspPI	GGNCC	2 cut(s)	1119, 1207
PstI	CTGCAG	1 cut(s)	797
PstNI	CAGNNNCTG	1 cut(s)	677
RsaI	GTAC	3 cut(s)	779, 994, 1168
RsaNI	GTAC	3 cut(s)	778, 993, 1167
RseI	CAYNNNNRTG	1 cut(s)	919
SacI	GAGCTC	1 cut(s)	704
SaqAI	TTAA	4 cut(s)	30, 44, 480, 837
SatI	GCNGC	1 cut(s)	793
Sau3AI	GATC	3 cut(s)	153, 419, 610
Sau96I	GGNCC	2 cut(s)	1119, 1207
ScaI	AGTACT	1 cut(s)	779
SchI	GAGTC	5 cut(s)	660, 683, 940, 1037, 1147
ScrFI	CCNGG	2 cut(s)	856, 997
SduI	GDGCHC	1 cut(s)	704
SfcI	CTRYAG	2 cut(s)	793, 950
SinI	GGWCC	1 cut(s)	1119
SmiMI	CAYNNNNRTG	1 cut(s)	919
SmlI	CTYRAG	1 cut(s)	1178
SmoI	CTYRAG	1 cut(s)	1178
Sse9I	AATT	6 cut(s)	212, 660, 745, 838, 861, 925
SseBI	AGGCCT	1 cut(s)	956
SsiI	CCGC	1 cut(s)	299
SspI	AATATT	1 cut(s)	14
SspMI	CTAG	2 cut(s)	467, 1001
SstI	GAGCTC	1 cut(s)	704
StuI	AGGCCT	1 cut(s)	956
StyD4I	CCNGG	2 cut(s)	854, 995
StyI	CCWWGG	4 cut(s)	466, 705, 1089, 1211
TaaI	ACNGT	2 cut(s)	171, 269
TaqI	TCGA	3 cut(s)	338, 418, 729
TasI	AATT	6 cut(s)	212, 660, 745, 838, 861, 925
TatI	WGTACW	2 cut(s)	777, 1166
TfiI	GAWTC	3 cut(s)	189, 437, 682
Tru1I	TTAA	4 cut(s)	30, 44, 480, 837
Tru9I	TTAA	4 cut(s)	30, 44, 480, 837
TscAI	CASTG	3 cut(s)	156, 274, 555
TseFI	GTSAC	2 cut(s)	171, 385
TseI	GCWGC	1 cut(s)	792
Tsp45I	GTSAC	2 cut(s)	171, 385
TspDTI	ATGAA	8 cut(s)	17, 450, 476, 727, 803, 831, 989, 1071
TspRI	CASTG	3 cut(s)	156, 274, 555
Van91I	CCANNNNNTGG	1 cut(s)	1198
VpaK11BI	GGWCC	1 cut(s)	1119
XapI	RAATTY	2 cut(s)	212, 745
XceI	RCATGY	1 cut(s)	179
XcmI	CCANNNNNNNNNTGG	1 cut(s)	766
XmaJI	CCTAGG	1 cut(s)	466
XmnI	GAANNNNTTC	1 cut(s)	822
XspI	CTAG	2 cut(s)	467, 1001
ZrmI	AGTACT	1 cut(s)	779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.