FvH4_2g10820

SAUR-like auxin-responsive protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000092
Physical Location & Seq
Forward (+)
9527700 .. 9528247
548 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g10820.t1

Sequence Viewer

Length: 348 bp
ATGGGTTTTCGGTTGCCTGGAATTATTAACGCCAAAAGAAGTCTCAGTAGATCTCTTTCTGCCTCAAAAACATCAAAGAGCTTAGATATCCCTAAAGGCTACTTTGCGGTCTATGTTGGGAAGGGTCAAAAGCGCTTTGTGATTCCGGTATCATACTTGAATGAGCCAGTGTTCCAGGATTTGCTGAGCCTAGCTGAGGAAGAATTCGGATACGAACATCCTATGGGTGGATTTCTAATGTCACAAGCTTCACGAGTCAGCTACAAGATGAAGAAGCGACTGACTGGTAAACCAGTCTATCAGATCAAGTACTCTCGTGTGAAGGCATGCCGAGAAAATCTGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

116

Amino Acids

13.03

Weight (kDa)

10.05

Isoelectric Point (pI)

47.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 16 - 75 7.1e-19 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000092)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21210 AT2G21210 AT3G20220 AT4G34780 AT4G38840
fragaria_vesca FvH4_2g10810 FvH4_2g10820 FvH4_2g10850 FvH4_2g10870 FvH4_3g13730 FvH4_5g22620 FvH4_5g22660 FvH4_5g22690 FvH4_5g22700 FvH4_5g22780 FvH4_5g22790 FvH4_5g22810 FvH4_5g22821 FvH4_5g22822 FvH4_5g24600 FvH4_5g24720
malus_domestica MD05G1051600.v1.1 MD05G1051700.v1.1 MD05G1051800.v1.1 MD05G1052000.v1.1 MD05G1052100.v1.1 MD05G1052200.v1.1 MD05G1052300.v1.1 MD05G1052400.v1.1 MD05G1113300.v1.1 MD10G1059200.v1.1 MD10G1059500.v1.1 MD10G1059600.v1.1 MD10G1059700.v1.1 MD10G1059800.v1.1 MD10G1060100.v1.1 MD10G1060200.v1.1 MD10G1060300.v1.1 MD10G1060400.v1.1 MD10G1060500.v1.1 MD10G1060600.v1.1 MD10G1060700.v1.1 MD10G1060800.v1.1 MD10G1060900.v1.1 MD10G1061000.v1.1 MD10G1061100.v1.1
prunus_persica Prupe.8G078600_v2.0.a1 Prupe.8G078700_v2.0.a1 Prupe.8G078900_v2.0.a1 Prupe.8G079000_v2.0.a1 Prupe.8G079100_v2.0.a1 Prupe.8G079200_v2.0.a1 Prupe.8G079400_v2.0.a1 Prupe.8G079500_v2.0.a1 Prupe.8G079600_v2.0.a1 Prupe.8G079700_v2.0.a1 Prupe.8G079900_v2.0.a1 Prupe.8G080000_v2.0.a1 Prupe.8G080100_v2.0.a1 Prupe.8G080200_v2.0.a1 Prupe.8G080300_v2.0.a1 Prupe.8G080500_v2.0.a1 Prupe.8G080600_v2.0.a1 Prupe.8G080700_v2.0.a1 Prupe.8G080800_v2.0.a1 Prupe.8G081000_v2.0.a1 Prupe.8G081100_v2.0.a1 Prupe.8G081300_v2.0.a1 Prupe.8G081500_v2.0.a1 Prupe.8G081700_v2.0.a1 Prupe.8G157700_v2.0.a1
pyrus_communis pycom05g04350 pycom05g04390 pycom05g04400 pycom05g04410 pycom10g04550 pycom10g04560 pycom10g04570 pycom10g04580 pycom10g04590 pycom10g04600 pycom10g04610 pycom10g04630 pycom10g04640 pycom10g04650 pycom10g04660 pycom10g04680 pycom10g10040
rosa_chinensis RchiOBHm_Chr0c32g0501561 RchiOBHm_Chr2g0124401 RchiOBHm_Chr2g0124451 RchiOBHm_Chr2g0124461 RchiOBHm_Chr2g0124531 RchiOBHm_Chr2g0124561 RchiOBHm_Chr3g0483671 RchiOBHm_Chr3g0483711 RchiOBHm_Chr5g0056801 RchiOBHm_Chr5g0056821 RchiOBHm_Chr5g0056831 RchiOBHm_Chr5g0056841 RchiOBHm_Chr5g0059921 RchiOBHm_Chr6g0268901 RchiOBHm_Chr6g0268941 RchiOBHm_Chr6g0268951 RchiOBHm_Chr6g0268961 RchiOBHm_Chr7g0210461 RchiOBHm_Chr7g0210481 RchiOBHm_Chr7g0210491 RchiOBHm_Chr7g0210511 RchiOBHm_Chr7g0210531 RchiOBHm_Chr7g0210621 RchiOBHm_Chr7g0210641 RchiOBHm_Chr7g0210651 RchiOBHm_Chr7g0210661 RchiOBHm_Chr7g0210711 RchiOBHm_Chr7g0210801 RchiOBHm_Chr7g0210831 RchiOBHm_Chr7g0210851 RchiOBHm_Chr7g0210871 RchiOBHm_Chr7g0210881 RchiOBHm_Chr7g0210891 RchiOBHm_Chr7g0211121 RchiOBHm_Chr7g0211131 RchiOBHm_Chr7g0211151 RchiOBHm_Chr7g0211501 RchiOBHm_Chr7g0211511
rosa_laevigata RLG00000003016 RLG00000003020 RLG00000003021 RLG00000003031 RLG00000003032 RLG00000003033 RLG00000003034 RLG00000003040 RLG00000003041 RLG00000018801 RLG00000035128 RLG00000035129
rosa_multiflora Rmu_co8425977.1_g000001 Rmu_sc0001081.1_g000010 Rmu_sc0001081.1_g000011 Rmu_sc0001303.1_g000001 Rmu_sc0001303.1_g000002 Rmu_sc0001303.1_g000004 Rmu_sc0001303.1_g000007 Rmu_sc0001460.1_g000030 Rmu_sc0001460.1_g000035 Rmu_sc0001460.1_g000041 Rmu_sc0001460.1_g000048 Rmu_sc0002755.1_g000005 Rmu_sc0002755.1_g000011 Rmu_sc0002755.1_g000017 Rmu_sc0002755.1_g000027 Rmu_sc0003765.1_g000020 Rmu_sc0003765.1_g000042 Rmu_sc0003765.1_g000043 Rmu_sc0003765.1_g000048 Rmu_sc0003765.1_g000057 Rmu_sc0003765.1_g000058 Rmu_sc0003807.1_g000013 Rmu_sc0003807.1_g000014 Rmu_sc0003807.1_g000015 Rmu_sc0003807.1_g000018 Rmu_sc0003907.1_g000001 Rmu_sc0005302.1_g000002 Rmu_sc0005302.1_g000003 Rmu_sc0005696.1_g000001 Rmu_sc0005844.1_g000001 Rmu_sc0005844.1_g000002 Rmu_sc0005844.1_g000003 Rmu_sc0008289.1_g000006 Rmu_sc0008289.1_g000008 Rmu_sc0008289.1_g000009 Rmu_sc0008289.1_g000014 Rmu_sc0010535.1_g000012 Rmu_sc0010535.1_g000013 Rmu_sc0010535.1_g000014 Rmu_sc0010535.1_g000015 Rmu_sc0011084.1_g000001 Rmu_sc0011691.1_g000001 Rmu_sc0017239.1_g000001 Rmu_sc0018437.1_g000009 Rmu_sc0018662.1_g000001 Rmu_sc0018662.1_g000003 Rmu_sc0020409.1_g000001 Rmu_sc0024576.1_g000001 Rmu_sc0034951.1_g000001
rosa_roxburghii Rroxscaffold_1G00023480 Rroxscaffold_1G00023490 Rroxscaffold_1G00023570 Rroxscaffold_2G00119860 Rroxscaffold_2G00119910 Rroxscaffold_3G00247990 Rroxscaffold_3G00248000 Rroxscaffold_3G00248010 Rroxscaffold_3G00248060 Rroxscaffold_3G00248070 Rroxscaffold_3G00248090 Rroxscaffold_3G00248100 Rroxscaffold_3G00248210 Rroxscaffold_3G00248230 Rroxscaffold_3G00248240 Rroxscaffold_3G00248270 Rroxscaffold_3G00248290
rosa_rugosa Rorug02G0251000.1 Rorug02G0251100 Rorug02G0251100 Rorug02G0251200 Rorug02G0251300 Rorug05G0302000 Rorug05G0302100 Rorug05G0302400 Rorug05G0302500 Rorug06G0043500 Rorug06G0043600 Rorug06G0043600 Rorug07G0121600 Rorug07G0121700 Rorug07G0121800 Rorug07G0121900 Rorug07G0122300 Rorug07G0122400 Rorug07G0122500 Rorug07G0122600 Rorug07G0122700 Rorug07G0122700 Rorug07G0123100 Rorug07G0123200 Rorug07G0123300 Rorug07G0123600 Rorug07G0123700 Rorug07G0124200 Rorug07G0124300 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124600 Rorug07G0124700
rosa_wichuraiana Rw0G021160 Rw0G021170 Rw2G024970 Rw2G024980 Rw2G025000 Rw2G025020 Rw2G025030 Rw2G025040 Rw2G025050 Rw3G023170 Rw3G023180 Rw5G034930 Rw5G034940 Rw5G034960 Rw5G035050 Rw5G035060 Rw5G035070 Rw6G014100 Rw6G014110 Rw6G014130 Rw6G014140 Rw6G014150 Rw7G021690 Rw7G021700 Rw7G021710 Rw7G021720 Rw7G021740 Rw7G021750 Rw7G021760 Rw7G021770 Rw7G021790 Rw7G021800 Rw7G021810 Rw7G021820 Rw7G021900 Rw7G021910 Rw7G021920 Rw7G021930 Rw7G021940 Rw7G021950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 107
AcsI RAATTY 1 cut(s) 203
AfaI GTAC 1 cut(s) 311
AfeI AGCGCT 1 cut(s) 134
AfiI CCNNNNNNNGG 2 cut(s) 196, 227
AgsI TTSAA 1 cut(s) 160
AjnI CCWGG 2 cut(s) 16, 174
AluBI AGCT 4 cut(s) 81, 194, 248, 261
AluI AGCT 4 cut(s) 81, 194, 248, 261
Alw26I GTCTC 1 cut(s) 47
Aor51HI AGCGCT 1 cut(s) 134
ApoI RAATTY 1 cut(s) 203
AspLEI GCGC 1 cut(s) 135
BauI CACGAG 2 cut(s) 252, 315
BbvCI CCTCAGC 1 cut(s) 195
BciT130I CCWGG 2 cut(s) 18, 176
BciVI GTATCC 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 47
BfaI CTAG 1 cut(s) 191
BfoI RGCGCY 1 cut(s) 136
BfuI GTATCC 1 cut(s) 203
BglII AGATCT 1 cut(s) 50
BlpI GCTNAGC 1 cut(s) 185
BmcAI AGTACT 1 cut(s) 311
Bme1390I CCNGG 2 cut(s) 18, 176
BmrFI CCNGG 2 cut(s) 18, 176
Bpu10I CCTNAGC 1 cut(s) 195
Bpu1102I GCTNAGC 1 cut(s) 185
BsaWI WCCGGW 1 cut(s) 145
Bsc4I CCNNNNNNNGG 2 cut(s) 196, 227
Bse1I ACTGG 3 cut(s) 167, 289, 293
BseBI CCWGG 2 cut(s) 18, 176
BseGI GGATG 1 cut(s) 217
BseLI CCNNNNNNNGG 2 cut(s) 196, 227
BseMII CTCAG 3 cut(s) 58, 176, 186
BseNI ACTGG 3 cut(s) 167, 289, 293
BsiSI CCGG 1 cut(s) 146
BslI CCNNNNNNNGG 2 cut(s) 196, 227
BsmAI GTCTC 1 cut(s) 47
Bsp143I GATC 2 cut(s) 50, 303
Bsp1720I GCTNAGC 1 cut(s) 185
BspACI CCGC 1 cut(s) 107
BspCNI CTCAG 3 cut(s) 57, 177, 187
BsrI ACTGG 3 cut(s) 167, 289, 293
BssMI GATC 2 cut(s) 50, 303
BssSI CACGAG 2 cut(s) 252, 315
Bst2BI CACGAG 2 cut(s) 252, 315
Bst2UI CCWGG 2 cut(s) 18, 176
BstC8I GCNNGC 1 cut(s) 328
BstDEI CTNAG 4 cut(s) 44, 82, 185, 195
BstENI CCTNNNNNAGG 1 cut(s) 194
BstF5I GGATG 1 cut(s) 217
BstH2I RGCGCY 1 cut(s) 136
BstHHI GCGC 1 cut(s) 135
BstKTI GATC 2 cut(s) 53, 306
BstMAI GTCTC 1 cut(s) 47
BstMBI GATC 2 cut(s) 50, 303
BstNI CCWGG 2 cut(s) 18, 176
BstNSI RCATGY 1 cut(s) 330
BstSCI CCNGG 2 cut(s) 16, 174
BstX2I RGATCY 1 cut(s) 50
BstYI RGATCY 1 cut(s) 50
BsuI GTATCC 1 cut(s) 203
BtsCI GGATG 1 cut(s) 217
BtsIMutI CAGTG 1 cut(s) 174
Cac8I GCNNGC 1 cut(s) 328
CfoI GCGC 1 cut(s) 135
Csp6I GTAC 1 cut(s) 310
CviAII CATG 1 cut(s) 327
CviJI RGCY 7 cut(s) 81, 99, 166, 189, 194, 248, 261
CviKI_1 RGCY 7 cut(s) 81, 99, 166, 189, 194, 248, 261
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 4 cut(s) 44, 82, 185, 195
DpnI GATC 2 cut(s) 52, 305
DpnII GATC 2 cut(s) 50, 303
Eco32I GATATC 1 cut(s) 88
Eco47III AGCGCT 1 cut(s) 134
EcoNI CCTNNNNNAGG 1 cut(s) 194
EcoRI GAATTC 1 cut(s) 203
EcoRII CCWGG 2 cut(s) 16, 174
EcoRV GATATC 1 cut(s) 88
FaeI CATG 1 cut(s) 330
FaiI YATR 4 cut(s) 114, 154, 224, 328
FatI CATG 1 cut(s) 326
FokI GGATG 1 cut(s) 204
FspBI CTAG 1 cut(s) 191
GlaI GCGC 1 cut(s) 134
HaeII RGCGCY 1 cut(s) 136
HapII CCGG 1 cut(s) 146
HhaI GCGC 1 cut(s) 135
Hin1II CATG 1 cut(s) 330
Hin6I GCGC 1 cut(s) 133
HinP1I GCGC 1 cut(s) 133
HindIII AAGCTT 1 cut(s) 246
HinfI GANTC 2 cut(s) 142, 255
HpaII CCGG 1 cut(s) 146
Hpy166II GTNNAC 1 cut(s) 290
Hpy188I TCNGA 2 cut(s) 209, 303
Hpy188III TCNNGA 1 cut(s) 252
Hpy8I GTNNAC 1 cut(s) 290
HpyAV CCTTC 2 cut(s) 115, 316
HpyF3I CTNAG 4 cut(s) 44, 82, 185, 195
Hsp92II CATG 1 cut(s) 330
HspAI GCGC 1 cut(s) 133
Kzo9I GATC 2 cut(s) 50, 303
LpnPI CCDG 8 cut(s) 3, 30, 159, 161, 180, 188, 270, 306
MaeI CTAG 1 cut(s) 191
MaeIII GTNAC 1 cut(s) 240
MalI GATC 2 cut(s) 52, 305
MboI GATC 2 cut(s) 50, 303
MboII GAAGA 2 cut(s) 212, 283
MflI RGATCY 1 cut(s) 50
MluCI AATT 2 cut(s) 21, 203
MlyI GAGTC 1 cut(s) 264
MnlI CCTC 2 cut(s) 73, 190
MseI TTAA 1 cut(s) 27
MspI CCGG 1 cut(s) 146
MspR9I CCNGG 2 cut(s) 18, 176
MvaI CCWGG 2 cut(s) 18, 176
NdeII GATC 2 cut(s) 50, 303
NlaIII CATG 1 cut(s) 330
NmuCI GTSAC 1 cut(s) 240
NspI RCATGY 1 cut(s) 330
PaeI GCATGC 1 cut(s) 330
PfeI GAWTC 1 cut(s) 142
PfoI TCCNGGA 1 cut(s) 174
PleI GAGTC 1 cut(s) 263
PpsI GAGTC 1 cut(s) 263
Psp6I CCWGG 2 cut(s) 16, 174
PspGI CCWGG 2 cut(s) 16, 174
PsuI RGATCY 1 cut(s) 50
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
SaqAI TTAA 1 cut(s) 27
Sau3AI GATC 2 cut(s) 50, 303
ScaI AGTACT 1 cut(s) 311
SchI GAGTC 1 cut(s) 264
ScrFI CCNGG 2 cut(s) 18, 176
SetI ASST 4 cut(s) 83, 196, 250, 263
SphI GCATGC 1 cut(s) 330
Sse9I AATT 2 cut(s) 21, 203
SsiI CCGC 1 cut(s) 107
SspMI CTAG 1 cut(s) 191
StyD4I CCNGG 2 cut(s) 16, 174
TasI AATT 2 cut(s) 21, 203
TatI WGTACW 1 cut(s) 309
TfiI GAWTC 1 cut(s) 142
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TscAI CASTG 1 cut(s) 174
TseFI GTSAC 1 cut(s) 240
Tsp45I GTSAC 1 cut(s) 240
TspDTI ATGAA 1 cut(s) 284
TspRI CASTG 1 cut(s) 174
XagI CCTNNNNNAGG 1 cut(s) 194
XapI RAATTY 1 cut(s) 203
XceI RCATGY 1 cut(s) 330
XspI CTAG 1 cut(s) 191
ZrmI AGTACT 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.