Rw5G035060

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000092
Physical Location & Seq
Reverse (-)
60532733 .. 60533026
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G035060.1

Sequence Viewer

Length: 294 bp
ATGGGTTTCCGGTTGCCTGCAATTGCTACAGCTACGAGAAGCCTTACTAGGTCTCTATCTGCTTCAAAGAGTTCGAAGACCTTATATATCCCAAAAGGCTACTTTGTAGTCTATGTTGGGGAGAGTCAGAAGAAGCGATTTGTGATTCCACTCTCGTACTTGAACGAGCCTATGTTCCAGGATTTGCTTAGTCAAGCTGAAGAAGAATTTGGATATGATCATCCTATGGGCGGTATCACGATCCCCTGCAGTGAACACAGCTTCCTTGAACTCACTTCTAGGTTAAGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

97

Amino Acids

10.87

Weight (kDa)

7.88

Isoelectric Point (pI)

42.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 17 - 94 9.5e-25 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000092)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21210 AT2G21210 AT3G20220 AT4G34780 AT4G38840
fragaria_vesca FvH4_2g10810 FvH4_2g10820 FvH4_2g10850 FvH4_2g10870 FvH4_3g13730 FvH4_5g22620 FvH4_5g22660 FvH4_5g22690 FvH4_5g22700 FvH4_5g22780 FvH4_5g22790 FvH4_5g22810 FvH4_5g22821 FvH4_5g22822 FvH4_5g24600 FvH4_5g24720
malus_domestica MD05G1051600.v1.1 MD05G1051700.v1.1 MD05G1051800.v1.1 MD05G1052000.v1.1 MD05G1052100.v1.1 MD05G1052200.v1.1 MD05G1052300.v1.1 MD05G1052400.v1.1 MD05G1113300.v1.1 MD10G1059200.v1.1 MD10G1059500.v1.1 MD10G1059600.v1.1 MD10G1059700.v1.1 MD10G1059800.v1.1 MD10G1060100.v1.1 MD10G1060200.v1.1 MD10G1060300.v1.1 MD10G1060400.v1.1 MD10G1060500.v1.1 MD10G1060600.v1.1 MD10G1060700.v1.1 MD10G1060800.v1.1 MD10G1060900.v1.1 MD10G1061000.v1.1 MD10G1061100.v1.1
prunus_persica Prupe.8G078600_v2.0.a1 Prupe.8G078700_v2.0.a1 Prupe.8G078900_v2.0.a1 Prupe.8G079000_v2.0.a1 Prupe.8G079100_v2.0.a1 Prupe.8G079200_v2.0.a1 Prupe.8G079400_v2.0.a1 Prupe.8G079500_v2.0.a1 Prupe.8G079600_v2.0.a1 Prupe.8G079700_v2.0.a1 Prupe.8G079900_v2.0.a1 Prupe.8G080000_v2.0.a1 Prupe.8G080100_v2.0.a1 Prupe.8G080200_v2.0.a1 Prupe.8G080300_v2.0.a1 Prupe.8G080500_v2.0.a1 Prupe.8G080600_v2.0.a1 Prupe.8G080700_v2.0.a1 Prupe.8G080800_v2.0.a1 Prupe.8G081000_v2.0.a1 Prupe.8G081100_v2.0.a1 Prupe.8G081300_v2.0.a1 Prupe.8G081500_v2.0.a1 Prupe.8G081700_v2.0.a1 Prupe.8G157700_v2.0.a1
pyrus_communis pycom05g04350 pycom05g04390 pycom05g04400 pycom05g04410 pycom10g04550 pycom10g04560 pycom10g04570 pycom10g04580 pycom10g04590 pycom10g04600 pycom10g04610 pycom10g04630 pycom10g04640 pycom10g04650 pycom10g04660 pycom10g04680 pycom10g10040
rosa_chinensis RchiOBHm_Chr0c32g0501561 RchiOBHm_Chr2g0124401 RchiOBHm_Chr2g0124451 RchiOBHm_Chr2g0124461 RchiOBHm_Chr2g0124531 RchiOBHm_Chr2g0124561 RchiOBHm_Chr3g0483671 RchiOBHm_Chr3g0483711 RchiOBHm_Chr5g0056801 RchiOBHm_Chr5g0056821 RchiOBHm_Chr5g0056831 RchiOBHm_Chr5g0056841 RchiOBHm_Chr5g0059921 RchiOBHm_Chr6g0268901 RchiOBHm_Chr6g0268941 RchiOBHm_Chr6g0268951 RchiOBHm_Chr6g0268961 RchiOBHm_Chr7g0210461 RchiOBHm_Chr7g0210481 RchiOBHm_Chr7g0210491 RchiOBHm_Chr7g0210511 RchiOBHm_Chr7g0210531 RchiOBHm_Chr7g0210621 RchiOBHm_Chr7g0210641 RchiOBHm_Chr7g0210651 RchiOBHm_Chr7g0210661 RchiOBHm_Chr7g0210711 RchiOBHm_Chr7g0210801 RchiOBHm_Chr7g0210831 RchiOBHm_Chr7g0210851 RchiOBHm_Chr7g0210871 RchiOBHm_Chr7g0210881 RchiOBHm_Chr7g0210891 RchiOBHm_Chr7g0211121 RchiOBHm_Chr7g0211131 RchiOBHm_Chr7g0211151 RchiOBHm_Chr7g0211501 RchiOBHm_Chr7g0211511
rosa_laevigata RLG00000003016 RLG00000003020 RLG00000003021 RLG00000003031 RLG00000003032 RLG00000003033 RLG00000003034 RLG00000003040 RLG00000003041 RLG00000018801 RLG00000035128 RLG00000035129
rosa_multiflora Rmu_co8425977.1_g000001 Rmu_sc0001081.1_g000010 Rmu_sc0001081.1_g000011 Rmu_sc0001303.1_g000001 Rmu_sc0001303.1_g000002 Rmu_sc0001303.1_g000004 Rmu_sc0001303.1_g000007 Rmu_sc0001460.1_g000030 Rmu_sc0001460.1_g000035 Rmu_sc0001460.1_g000041 Rmu_sc0001460.1_g000048 Rmu_sc0002755.1_g000005 Rmu_sc0002755.1_g000011 Rmu_sc0002755.1_g000017 Rmu_sc0002755.1_g000027 Rmu_sc0003765.1_g000020 Rmu_sc0003765.1_g000042 Rmu_sc0003765.1_g000043 Rmu_sc0003765.1_g000048 Rmu_sc0003765.1_g000057 Rmu_sc0003765.1_g000058 Rmu_sc0003807.1_g000013 Rmu_sc0003807.1_g000014 Rmu_sc0003807.1_g000015 Rmu_sc0003807.1_g000018 Rmu_sc0003907.1_g000001 Rmu_sc0005302.1_g000002 Rmu_sc0005302.1_g000003 Rmu_sc0005696.1_g000001 Rmu_sc0005844.1_g000001 Rmu_sc0005844.1_g000002 Rmu_sc0005844.1_g000003 Rmu_sc0008289.1_g000006 Rmu_sc0008289.1_g000008 Rmu_sc0008289.1_g000009 Rmu_sc0008289.1_g000014 Rmu_sc0010535.1_g000012 Rmu_sc0010535.1_g000013 Rmu_sc0010535.1_g000014 Rmu_sc0010535.1_g000015 Rmu_sc0011084.1_g000001 Rmu_sc0011691.1_g000001 Rmu_sc0017239.1_g000001 Rmu_sc0018437.1_g000009 Rmu_sc0018662.1_g000001 Rmu_sc0018662.1_g000003 Rmu_sc0020409.1_g000001 Rmu_sc0024576.1_g000001 Rmu_sc0034951.1_g000001
rosa_roxburghii Rroxscaffold_1G00023480 Rroxscaffold_1G00023490 Rroxscaffold_1G00023570 Rroxscaffold_2G00119860 Rroxscaffold_2G00119910 Rroxscaffold_3G00247990 Rroxscaffold_3G00248000 Rroxscaffold_3G00248010 Rroxscaffold_3G00248060 Rroxscaffold_3G00248070 Rroxscaffold_3G00248090 Rroxscaffold_3G00248100 Rroxscaffold_3G00248210 Rroxscaffold_3G00248230 Rroxscaffold_3G00248240 Rroxscaffold_3G00248270 Rroxscaffold_3G00248290
rosa_rugosa Rorug02G0251000.1 Rorug02G0251100 Rorug02G0251100 Rorug02G0251200 Rorug02G0251300 Rorug05G0302000 Rorug05G0302100 Rorug05G0302400 Rorug05G0302500 Rorug06G0043500 Rorug06G0043600 Rorug06G0043600 Rorug07G0121600 Rorug07G0121700 Rorug07G0121800 Rorug07G0121900 Rorug07G0122300 Rorug07G0122400 Rorug07G0122500 Rorug07G0122600 Rorug07G0122700 Rorug07G0122700 Rorug07G0123100 Rorug07G0123200 Rorug07G0123300 Rorug07G0123600 Rorug07G0123700 Rorug07G0124200 Rorug07G0124300 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124600 Rorug07G0124700
rosa_wichuraiana Rw0G021160 Rw0G021170 Rw2G024970 Rw2G024980 Rw2G025000 Rw2G025020 Rw2G025030 Rw2G025040 Rw2G025050 Rw3G023170 Rw3G023180 Rw5G034930 Rw5G034940 Rw5G034960 Rw5G035050 Rw5G035060 Rw5G035070 Rw6G014100 Rw6G014110 Rw6G014130 Rw6G014140 Rw6G014150 Rw7G021690 Rw7G021700 Rw7G021710 Rw7G021720 Rw7G021740 Rw7G021750 Rw7G021760 Rw7G021770 Rw7G021790 Rw7G021800 Rw7G021810 Rw7G021820 Rw7G021900 Rw7G021910 Rw7G021920 Rw7G021930 Rw7G021940 Rw7G021950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 231
AclWI GGATC 1 cut(s) 235
AcsI RAATTY 1 cut(s) 206
AcuI CTGAAG 1 cut(s) 219
AfaI GTAC 1 cut(s) 158
AfiI CCNNNNNNNGG 1 cut(s) 230
AgsI TTSAA 3 cut(s) 66, 163, 269
AjnI CCWGG 1 cut(s) 177
AjuI GAANNNNNNNTTGG 2 cut(s) 192, 224
AloI GAACNNNNNNTCC 2 cut(s) 246, 278
AluBI AGCT 3 cut(s) 32, 197, 261
AluI AGCT 3 cut(s) 32, 197, 261
Alw26I GTCTC 1 cut(s) 57
AlwI GGATC 1 cut(s) 235
ApoI RAATTY 1 cut(s) 206
AsuII TTCGAA 1 cut(s) 74
BbsI GAAGAC 1 cut(s) 83
BciT130I CCWGG 1 cut(s) 179
BclI TGATCA 1 cut(s) 217
BcoDI GTCTC 1 cut(s) 57
BfaI CTAG 2 cut(s) 48, 279
BfmI CTRYAG 2 cut(s) 27, 247
Bme1390I CCNGG 1 cut(s) 179
BmrFI CCNGG 1 cut(s) 179
BpiI GAAGAC 1 cut(s) 83
Bpu14I TTCGAA 1 cut(s) 74
BsaI GGTCTC 1 cut(s) 57
BsaWI WCCGGW 1 cut(s) 9
Bsc4I CCNNNNNNNGG 1 cut(s) 230
BseBI CCWGG 1 cut(s) 179
BseGI GGATG 1 cut(s) 220
BseLI CCNNNNNNNGG 1 cut(s) 230
BsiSI CCGG 1 cut(s) 10
BslI CCNNNNNNNGG 1 cut(s) 230
BsmAI GTCTC 1 cut(s) 57
Bso31I GGTCTC 1 cut(s) 57
Bsp119I TTCGAA 1 cut(s) 74
Bsp143I GATC 2 cut(s) 217, 240
BspACI CCGC 1 cut(s) 231
BspMAI CTGCAG 1 cut(s) 251
BspPI GGATC 1 cut(s) 235
BspT104I TTCGAA 1 cut(s) 74
BspTNI GGTCTC 1 cut(s) 57
BssMI GATC 2 cut(s) 217, 240
Bst2UI CCWGG 1 cut(s) 179
BstBI TTCGAA 1 cut(s) 74
BstC8I GCNNGC 1 cut(s) 18
BstDEI CTNAG 1 cut(s) 188
BstF5I GGATG 1 cut(s) 220
BstKTI GATC 2 cut(s) 220, 243
BstMAI GTCTC 1 cut(s) 57
BstMBI GATC 2 cut(s) 217, 240
BstNI CCWGG 1 cut(s) 179
BstSCI CCNGG 1 cut(s) 177
BstSFI CTRYAG 2 cut(s) 27, 247
BstV2I GAAGAC 1 cut(s) 83
BtsCI GGATG 1 cut(s) 220
BtsI GCAGTG 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 256
Cac8I GCNNGC 1 cut(s) 18
Csp6I GTAC 1 cut(s) 157
CviJI RGCY 6 cut(s) 32, 42, 99, 169, 197, 261
CviKI_1 RGCY 6 cut(s) 32, 42, 99, 169, 197, 261
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 1 cut(s) 188
DpnI GATC 2 cut(s) 219, 242
DpnII GATC 2 cut(s) 217, 240
Eco31I GGTCTC 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 219
EcoRII CCWGG 1 cut(s) 177
FaiI YATR 6 cut(s) 85, 87, 114, 173, 216, 227
FbaI TGATCA 1 cut(s) 217
FokI GGATG 1 cut(s) 207
FspBI CTAG 2 cut(s) 48, 279
HapII CCGG 1 cut(s) 10
HinfI GANTC 2 cut(s) 124, 145
HpaII CCGG 1 cut(s) 10
Hpy166II GTNNAC 1 cut(s) 254
Hpy188I TCNGA 1 cut(s) 129
Hpy188III TCNNGA 1 cut(s) 238
Hpy8I GTNNAC 1 cut(s) 254
HpyCH4V TGCA 2 cut(s) 20, 249
HpyF3I CTNAG 1 cut(s) 188
Ksp22I TGATCA 1 cut(s) 217
Kzo9I GATC 2 cut(s) 217, 240
LpnPI CCDG 5 cut(s) 23, 30, 164, 191, 259
MaeI CTAG 2 cut(s) 48, 279
MalI GATC 2 cut(s) 219, 242
MboI GATC 2 cut(s) 217, 240
MboII GAAGA 4 cut(s) 88, 142, 212, 215
MfeI CAATTG 1 cut(s) 21
MluCI AATT 2 cut(s) 21, 206
MlyI GAGTC 1 cut(s) 133
MseI TTAA 1 cut(s) 284
MspI CCGG 1 cut(s) 10
MspR9I CCNGG 1 cut(s) 179
MunI CAATTG 1 cut(s) 21
MvaI CCWGG 1 cut(s) 179
NdeII GATC 2 cut(s) 217, 240
NspV TTCGAA 1 cut(s) 74
PfeI GAWTC 1 cut(s) 145
PfoI TCCNGGA 1 cut(s) 177
PleI GAGTC 1 cut(s) 132
PpsI GAGTC 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 177
PspGI CCWGG 1 cut(s) 177
PstI CTGCAG 1 cut(s) 251
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
SaqAI TTAA 1 cut(s) 284
Sau3AI GATC 2 cut(s) 217, 240
SchI GAGTC 1 cut(s) 133
ScrFI CCNGG 1 cut(s) 179
SetI ASST 6 cut(s) 34, 53, 83, 199, 263, 284
SfcI CTRYAG 2 cut(s) 27, 247
SfuI TTCGAA 1 cut(s) 74
Sse9I AATT 2 cut(s) 21, 206
SsiI CCGC 1 cut(s) 231
SspMI CTAG 2 cut(s) 48, 279
StyD4I CCNGG 1 cut(s) 177
TaqI TCGA 1 cut(s) 74
TasI AATT 2 cut(s) 21, 206
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 1 cut(s) 284
Tru9I TTAA 1 cut(s) 284
TscAI CASTG 1 cut(s) 256
TspRI CASTG 1 cut(s) 256
XapI RAATTY 1 cut(s) 206
XspI CTAG 2 cut(s) 48, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.