Rmu_sc0005696.1_g000001

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005696.1
OG0000092
Physical Location & Seq
Forward (+)
1813 .. 3391
1579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005696.1_g000001.1.cds

Sequence Viewer

Length: 495 bp
atgggtttccgattgcctcgaattgctagcacaaagacatcagatatcccaaaaggctactttgtggtctatgttggagagagccagaagaaacgaattgtggttccaatatcatatttgaaccaacctttgtttcaggatttgctgagtcaagctgaagaagaatttggataccaacatccaatgggtgggatcacaattccttgcagtgaagacaccttcatgaatctcacttcccgcttaagtgtcgataccagccctatagctccagcaccagcccacctgcctttgcgtccctgcaacccgccgatctgctgcagcaaccccaggcctccgacctgcgtactgtaccagtccgcctgcgtaccagcccagcccggacaccacagccgcctcagcgcccccgccacctgcagcttttctgcccaccgccacctgcagaccagaagagaggaagaccaggagaagaaggaaaaccagaagaaagaaaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

164

Amino Acids

18.32

Weight (kDa)

8.7

Isoelectric Point (pI)

54.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000092)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21210 AT2G21210 AT3G20220 AT4G34780 AT4G38840
fragaria_vesca FvH4_2g10810 FvH4_2g10820 FvH4_2g10850 FvH4_2g10870 FvH4_3g13730 FvH4_5g22620 FvH4_5g22660 FvH4_5g22690 FvH4_5g22700 FvH4_5g22780 FvH4_5g22790 FvH4_5g22810 FvH4_5g22821 FvH4_5g22822 FvH4_5g24600 FvH4_5g24720
malus_domestica MD05G1051600.v1.1 MD05G1051700.v1.1 MD05G1051800.v1.1 MD05G1052000.v1.1 MD05G1052100.v1.1 MD05G1052200.v1.1 MD05G1052300.v1.1 MD05G1052400.v1.1 MD05G1113300.v1.1 MD10G1059200.v1.1 MD10G1059500.v1.1 MD10G1059600.v1.1 MD10G1059700.v1.1 MD10G1059800.v1.1 MD10G1060100.v1.1 MD10G1060200.v1.1 MD10G1060300.v1.1 MD10G1060400.v1.1 MD10G1060500.v1.1 MD10G1060600.v1.1 MD10G1060700.v1.1 MD10G1060800.v1.1 MD10G1060900.v1.1 MD10G1061000.v1.1 MD10G1061100.v1.1
prunus_persica Prupe.8G078600_v2.0.a1 Prupe.8G078700_v2.0.a1 Prupe.8G078900_v2.0.a1 Prupe.8G079000_v2.0.a1 Prupe.8G079100_v2.0.a1 Prupe.8G079200_v2.0.a1 Prupe.8G079400_v2.0.a1 Prupe.8G079500_v2.0.a1 Prupe.8G079600_v2.0.a1 Prupe.8G079700_v2.0.a1 Prupe.8G079900_v2.0.a1 Prupe.8G080000_v2.0.a1 Prupe.8G080100_v2.0.a1 Prupe.8G080200_v2.0.a1 Prupe.8G080300_v2.0.a1 Prupe.8G080500_v2.0.a1 Prupe.8G080600_v2.0.a1 Prupe.8G080700_v2.0.a1 Prupe.8G080800_v2.0.a1 Prupe.8G081000_v2.0.a1 Prupe.8G081100_v2.0.a1 Prupe.8G081300_v2.0.a1 Prupe.8G081500_v2.0.a1 Prupe.8G081700_v2.0.a1 Prupe.8G157700_v2.0.a1
pyrus_communis pycom05g04350 pycom05g04390 pycom05g04400 pycom05g04410 pycom10g04550 pycom10g04560 pycom10g04570 pycom10g04580 pycom10g04590 pycom10g04600 pycom10g04610 pycom10g04630 pycom10g04640 pycom10g04650 pycom10g04660 pycom10g04680 pycom10g10040
rosa_chinensis RchiOBHm_Chr0c32g0501561 RchiOBHm_Chr2g0124401 RchiOBHm_Chr2g0124451 RchiOBHm_Chr2g0124461 RchiOBHm_Chr2g0124531 RchiOBHm_Chr2g0124561 RchiOBHm_Chr3g0483671 RchiOBHm_Chr3g0483711 RchiOBHm_Chr5g0056801 RchiOBHm_Chr5g0056821 RchiOBHm_Chr5g0056831 RchiOBHm_Chr5g0056841 RchiOBHm_Chr5g0059921 RchiOBHm_Chr6g0268901 RchiOBHm_Chr6g0268941 RchiOBHm_Chr6g0268951 RchiOBHm_Chr6g0268961 RchiOBHm_Chr7g0210461 RchiOBHm_Chr7g0210481 RchiOBHm_Chr7g0210491 RchiOBHm_Chr7g0210511 RchiOBHm_Chr7g0210531 RchiOBHm_Chr7g0210621 RchiOBHm_Chr7g0210641 RchiOBHm_Chr7g0210651 RchiOBHm_Chr7g0210661 RchiOBHm_Chr7g0210711 RchiOBHm_Chr7g0210801 RchiOBHm_Chr7g0210831 RchiOBHm_Chr7g0210851 RchiOBHm_Chr7g0210871 RchiOBHm_Chr7g0210881 RchiOBHm_Chr7g0210891 RchiOBHm_Chr7g0211121 RchiOBHm_Chr7g0211131 RchiOBHm_Chr7g0211151 RchiOBHm_Chr7g0211501 RchiOBHm_Chr7g0211511
rosa_laevigata RLG00000003016 RLG00000003020 RLG00000003021 RLG00000003031 RLG00000003032 RLG00000003033 RLG00000003034 RLG00000003040 RLG00000003041 RLG00000018801 RLG00000035128 RLG00000035129
rosa_multiflora Rmu_co8425977.1_g000001 Rmu_sc0001081.1_g000010 Rmu_sc0001081.1_g000011 Rmu_sc0001303.1_g000001 Rmu_sc0001303.1_g000002 Rmu_sc0001303.1_g000004 Rmu_sc0001303.1_g000007 Rmu_sc0001460.1_g000030 Rmu_sc0001460.1_g000035 Rmu_sc0001460.1_g000041 Rmu_sc0001460.1_g000048 Rmu_sc0002755.1_g000005 Rmu_sc0002755.1_g000011 Rmu_sc0002755.1_g000017 Rmu_sc0002755.1_g000027 Rmu_sc0003765.1_g000020 Rmu_sc0003765.1_g000042 Rmu_sc0003765.1_g000043 Rmu_sc0003765.1_g000048 Rmu_sc0003765.1_g000057 Rmu_sc0003765.1_g000058 Rmu_sc0003807.1_g000013 Rmu_sc0003807.1_g000014 Rmu_sc0003807.1_g000015 Rmu_sc0003807.1_g000018 Rmu_sc0003907.1_g000001 Rmu_sc0005302.1_g000002 Rmu_sc0005302.1_g000003 Rmu_sc0005696.1_g000001 Rmu_sc0005844.1_g000001 Rmu_sc0005844.1_g000002 Rmu_sc0005844.1_g000003 Rmu_sc0008289.1_g000006 Rmu_sc0008289.1_g000008 Rmu_sc0008289.1_g000009 Rmu_sc0008289.1_g000014 Rmu_sc0010535.1_g000012 Rmu_sc0010535.1_g000013 Rmu_sc0010535.1_g000014 Rmu_sc0010535.1_g000015 Rmu_sc0011084.1_g000001 Rmu_sc0011691.1_g000001 Rmu_sc0017239.1_g000001 Rmu_sc0018437.1_g000009 Rmu_sc0018662.1_g000001 Rmu_sc0018662.1_g000003 Rmu_sc0020409.1_g000001 Rmu_sc0024576.1_g000001 Rmu_sc0034951.1_g000001
rosa_roxburghii Rroxscaffold_1G00023480 Rroxscaffold_1G00023490 Rroxscaffold_1G00023570 Rroxscaffold_2G00119860 Rroxscaffold_2G00119910 Rroxscaffold_3G00247990 Rroxscaffold_3G00248000 Rroxscaffold_3G00248010 Rroxscaffold_3G00248060 Rroxscaffold_3G00248070 Rroxscaffold_3G00248090 Rroxscaffold_3G00248100 Rroxscaffold_3G00248210 Rroxscaffold_3G00248230 Rroxscaffold_3G00248240 Rroxscaffold_3G00248270 Rroxscaffold_3G00248290
rosa_rugosa Rorug02G0251000.1 Rorug02G0251100 Rorug02G0251100 Rorug02G0251200 Rorug02G0251300 Rorug05G0302000 Rorug05G0302100 Rorug05G0302400 Rorug05G0302500 Rorug06G0043500 Rorug06G0043600 Rorug06G0043600 Rorug07G0121600 Rorug07G0121700 Rorug07G0121800 Rorug07G0121900 Rorug07G0122300 Rorug07G0122400 Rorug07G0122500 Rorug07G0122600 Rorug07G0122700 Rorug07G0122700 Rorug07G0123100 Rorug07G0123200 Rorug07G0123300 Rorug07G0123600 Rorug07G0123700 Rorug07G0124200 Rorug07G0124300 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124600 Rorug07G0124700
rosa_wichuraiana Rw0G021160 Rw0G021170 Rw2G024970 Rw2G024980 Rw2G025000 Rw2G025020 Rw2G025030 Rw2G025040 Rw2G025050 Rw3G023170 Rw3G023180 Rw5G034930 Rw5G034940 Rw5G034960 Rw5G035050 Rw5G035060 Rw5G035070 Rw6G014100 Rw6G014110 Rw6G014130 Rw6G014140 Rw6G014150 Rw7G021690 Rw7G021700 Rw7G021710 Rw7G021720 Rw7G021740 Rw7G021750 Rw7G021760 Rw7G021770 Rw7G021790 Rw7G021800 Rw7G021810 Rw7G021820 Rw7G021900 Rw7G021910 Rw7G021920 Rw7G021930 Rw7G021940 Rw7G021950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 3 cut(s) 291, 419, 444
Acc36I ACCTGC 4 cut(s) 291, 347, 419, 444
AccB7I CCANNNNNTGG 1 cut(s) 188
AciI CCGC 6 cut(s) 238, 305, 357, 391, 405, 430
AclWI GGATC 1 cut(s) 200
AcsI RAATTY 1 cut(s) 164
AcuI CTGAAG 1 cut(s) 177
AfaI GTAC 3 cut(s) 345, 350, 366
AfiI CCNNNNNNNGG 1 cut(s) 188
AflII CTTAAG 1 cut(s) 241
AgsI TTSAA 1 cut(s) 121
AjnI CCWGG 2 cut(s) 326, 459
AjuI GAANNNNNNNTTGG 4 cut(s) 117, 149, 150, 182
AluBI AGCT 3 cut(s) 155, 266, 417
AluI AGCT 3 cut(s) 155, 266, 417
AlwI GGATC 1 cut(s) 200
AoxI GGCC 1 cut(s) 329
ApeKI GCWGC 3 cut(s) 315, 318, 414
ApoI RAATTY 1 cut(s) 164
AspLEI GCGC 1 cut(s) 401
AsuC2I CCSGG 1 cut(s) 378
AsuNHI GCTAGC 1 cut(s) 26
BbsI GAAGAC 2 cut(s) 219, 462
BbvCI CCTCAGC 1 cut(s) 395
BbvI GCAGC 3 cut(s) 302, 330, 426
BciT130I CCWGG 2 cut(s) 328, 461
BciVI GTATCC 1 cut(s) 164
BcnI CCSGG 1 cut(s) 378
BfaI CTAG 1 cut(s) 27
BfmI CTRYAG 4 cut(s) 261, 316, 412, 437
BfoI RGCGCY 1 cut(s) 402
BfrI CTTAAG 1 cut(s) 241
BfuAI ACCTGC 4 cut(s) 291, 347, 419, 444
BfuI GTATCC 1 cut(s) 164
BisI GCNGC 4 cut(s) 316, 319, 391, 415
BlsI GCNGC 4 cut(s) 317, 320, 392, 416
Bme1390I CCNGG 3 cut(s) 328, 378, 461
BmiI GGNNCC 1 cut(s) 105
BmrFI CCNGG 3 cut(s) 328, 378, 461
BmtI GCTAGC 1 cut(s) 30
BpiI GAAGAC 2 cut(s) 219, 462
BpmI CTGGAG 1 cut(s) 252
Bpu10I CCTNAGC 1 cut(s) 395
BpuMI CCSGG 1 cut(s) 378
BsaJI CCNNGG 1 cut(s) 326
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse1I ACTGG 1 cut(s) 352
BseBI CCWGG 2 cut(s) 328, 461
BseDI CCNNGG 1 cut(s) 326
BseGI GGATG 1 cut(s) 178
BseLI CCNNNNNNNGG 1 cut(s) 188
BseMII CTCAG 2 cut(s) 137, 409
BseNI ACTGG 1 cut(s) 352
BseXI GCAGC 3 cut(s) 302, 330, 426
BseYI CCCAGC 1 cut(s) 372
BshFI GGCC 1 cut(s) 331
BsiSI CCGG 1 cut(s) 378
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 188
BsmFI GGGAC 1 cut(s) 279
BsnI GGCC 1 cut(s) 331
Bsp143I GATC 2 cut(s) 192, 309
BspACI CCGC 6 cut(s) 238, 305, 357, 391, 405, 430
BspANI GGCC 1 cut(s) 331
BspCNI CTCAG 2 cut(s) 138, 408
BspHI TCATGA 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 105
BspMAI CTGCAG 3 cut(s) 320, 416, 441
BspMI ACCTGC 4 cut(s) 291, 347, 419, 444
BspOI GCTAGC 1 cut(s) 30
BspPI GGATC 1 cut(s) 200
BspTI CTTAAG 1 cut(s) 241
BsrI ACTGG 1 cut(s) 352
BssECI CCNNGG 1 cut(s) 326
BssMI GATC 2 cut(s) 192, 309
Bst2UI CCWGG 2 cut(s) 328, 461
Bst4CI ACNGT 1 cut(s) 348
Bst6I CTCTTC 1 cut(s) 442
BstAFI CTTAAG 1 cut(s) 241
BstC8I GCNNGC 2 cut(s) 28, 361
BstDEI CTNAG 2 cut(s) 146, 395
BstF5I GGATG 1 cut(s) 178
BstH2I RGCGCY 1 cut(s) 402
BstHHI GCGC 1 cut(s) 401
BstKTI GATC 2 cut(s) 195, 312
BstMBI GATC 2 cut(s) 192, 309
BstMWI GCNNNNNNNGC 1 cut(s) 396
BstNI CCWGG 2 cut(s) 328, 461
BstSCI CCNGG 3 cut(s) 326, 376, 459
BstSFI CTRYAG 4 cut(s) 261, 316, 412, 437
BstV1I GCAGC 3 cut(s) 302, 330, 426
BstV2I GAAGAC 2 cut(s) 219, 462
BsuI GTATCC 1 cut(s) 164
BsuRI GGCC 1 cut(s) 331
BtsCI GGATG 1 cut(s) 178
BtsI GCAGTG 1 cut(s) 214
BtsIMutI CAGTG 1 cut(s) 214
BveI ACCTGC 4 cut(s) 291, 347, 419, 444
Cac8I GCNNGC 2 cut(s) 28, 361
CciI TCATGA 1 cut(s) 222
CfoI GCGC 1 cut(s) 401
CseI GACGC 1 cut(s) 281
Csp6I GTAC 3 cut(s) 344, 349, 365
CviAII CATG 1 cut(s) 223
CviQI GTAC 3 cut(s) 344, 349, 365
DdeI CTNAG 2 cut(s) 146, 395
DpnI GATC 2 cut(s) 194, 311
DpnII GATC 2 cut(s) 192, 309
Eam1104I CTCTTC 1 cut(s) 442
EarI CTCTTC 1 cut(s) 442
EciI GGCGGA 1 cut(s) 346
Eco147I AGGCCT 1 cut(s) 331
Eco32I GATATC 1 cut(s) 46
Eco57I CTGAAG 1 cut(s) 177
EcoRII CCWGG 2 cut(s) 326, 459
EcoRV GATATC 1 cut(s) 46
FaeI CATG 1 cut(s) 226
FaiI YATR 4 cut(s) 72, 115, 224, 263
FaqI GGGAC 1 cut(s) 279
FatI CATG 1 cut(s) 222
FauI CCCGC 3 cut(s) 245, 312, 412
Fnu4HI GCNGC 4 cut(s) 316, 319, 391, 415
FokI GGATG 1 cut(s) 165
Fsp4HI GCNGC 4 cut(s) 316, 319, 391, 415
FspBI CTAG 1 cut(s) 27
GlaI GCGC 1 cut(s) 400
GluI GCNGC 4 cut(s) 316, 319, 391, 415
GsaI CCCAGC 1 cut(s) 376
GsuI CTGGAG 1 cut(s) 252
HaeII RGCGCY 1 cut(s) 402
HaeIII GGCC 1 cut(s) 331
HapII CCGG 1 cut(s) 378
HgaI GACGC 1 cut(s) 281
HhaI GCGC 1 cut(s) 401
Hin1II CATG 1 cut(s) 226
Hin6I GCGC 1 cut(s) 399
HinP1I GCGC 1 cut(s) 399
HinfI GANTC 2 cut(s) 148, 226
HpaII CCGG 1 cut(s) 378
Hpy188I TCNGA 3 cut(s) 11, 43, 336
Hpy188III TCNNGA 2 cut(s) 137, 223
HpyAV CCTTC 2 cut(s) 229, 463
HpyCH4III ACNGT 1 cut(s) 348
HpyCH4V TGCA 5 cut(s) 207, 300, 318, 414, 439
HpyF10VI GCNNNNNNNGC 1 cut(s) 396
HpyF3I CTNAG 2 cut(s) 146, 395
Hsp92II CATG 1 cut(s) 226
HspAI GCGC 1 cut(s) 399
Kzo9I GATC 2 cut(s) 192, 309
LmnI GCTCC 1 cut(s) 271
Lsp1109I GCAGC 3 cut(s) 302, 330, 426
MaeI CTAG 1 cut(s) 27
MalI GATC 2 cut(s) 194, 311
MboI GATC 2 cut(s) 192, 309
MboII GAAGA 8 cut(s) 100, 170, 173, 224, 459, 467, 478, 493
MluCI AATT 4 cut(s) 21, 96, 164, 198
MlyI GAGTC 1 cut(s) 157
MmeI TCCRAC 2 cut(s) 55, 359
MnlI CCTC 4 cut(s) 27, 342, 404, 445
MseI TTAA 1 cut(s) 242
MslI CAYNNNNRTG 1 cut(s) 221
MspCI CTTAAG 1 cut(s) 241
MspI CCGG 1 cut(s) 378
MspR9I CCNGG 3 cut(s) 328, 378, 461
MvaI CCWGG 2 cut(s) 328, 461
MwoI GCNNNNNNNGC 1 cut(s) 396
NciI CCSGG 1 cut(s) 378
NdeII GATC 2 cut(s) 192, 309
NheI GCTAGC 1 cut(s) 26
NlaIII CATG 1 cut(s) 226
NlaIV GGNNCC 1 cut(s) 105
PagI TCATGA 1 cut(s) 222
PaqCI CACCTGC 3 cut(s) 291, 419, 444
PceI AGGCCT 1 cut(s) 331
PfeI GAWTC 1 cut(s) 226
PflMI CCANNNNNTGG 1 cut(s) 188
PkrI GCNGC 4 cut(s) 317, 320, 392, 416
PleI GAGTC 1 cut(s) 156
PpsI GAGTC 1 cut(s) 156
Psp6I CCWGG 2 cut(s) 326, 459
PspFI CCCAGC 1 cut(s) 372
PspGI CCWGG 2 cut(s) 326, 459
PspN4I GGNNCC 1 cut(s) 105
PstI CTGCAG 3 cut(s) 320, 416, 441
RsaI GTAC 3 cut(s) 345, 350, 366
RsaNI GTAC 3 cut(s) 344, 349, 365
RseI CAYNNNNRTG 1 cut(s) 221
SaqAI TTAA 1 cut(s) 242
SatI GCNGC 4 cut(s) 316, 319, 391, 415
Sau3AI GATC 2 cut(s) 192, 309
SchI GAGTC 1 cut(s) 157
ScrFI CCNGG 3 cut(s) 328, 378, 461
SetI ASST 9 cut(s) 130, 157, 221, 268, 285, 341, 413, 419, 438
SfcI CTRYAG 4 cut(s) 261, 316, 412, 437
SmiMI CAYNNNNRTG 1 cut(s) 221
SmlI CTYRAG 1 cut(s) 241
SmoI CTYRAG 1 cut(s) 241
Sse9I AATT 4 cut(s) 21, 96, 164, 198
SseBI AGGCCT 1 cut(s) 331
SsiI CCGC 6 cut(s) 238, 305, 357, 391, 405, 430
SspMI CTAG 1 cut(s) 27
StuI AGGCCT 1 cut(s) 331
StyD4I CCNGG 3 cut(s) 326, 376, 459
TaaI ACNGT 1 cut(s) 348
TaqI TCGA 2 cut(s) 19, 249
TasI AATT 4 cut(s) 21, 96, 164, 198
TauI GCSGC 1 cut(s) 393
TfiI GAWTC 1 cut(s) 226
Tru1I TTAA 1 cut(s) 242
Tru9I TTAA 1 cut(s) 242
TscAI CASTG 1 cut(s) 214
TseI GCWGC 3 cut(s) 315, 318, 414
TspDTI ATGAA 2 cut(s) 211, 239
TspRI CASTG 1 cut(s) 214
Van91I CCANNNNNTGG 1 cut(s) 188
Vha464I CTTAAG 1 cut(s) 241
XapI RAATTY 1 cut(s) 164
XspI CTAG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.