Rroxscaffold_3G00248090

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000092
Physical Location & Seq
Forward (+)
41400843 .. 41405040
4198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00248090.1

Sequence Viewer

Length: 285 bp
ATGGCTGCAGCATGCTTGTCTTTCAATGATGAATTTGCCATGCTTGTTGCCCTTTGGCATAAAGCTTGTCACACAAATATCCCAAAAGGCTACTTTGCAGTCTATGTTGGAGAGAGCCAGAAGAAACGATTTGTGGTTCCAATATCATATTTGAACCAACCTTTGTTTCAGGATTTGCTGAGTCAAGCTGAAGAAGAATTTGGATACCATCATCCAATGGGCGGTATCACAATTCCTTGCAGTGAAGACACCTTCATTGATCTCACTTCCCGCTTAAGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

94

Amino Acids

10.59

Weight (kDa)

5.38

Isoelectric Point (pI)

57.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 22 - 91 4.6e-24 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000092)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21210 AT2G21210 AT3G20220 AT4G34780 AT4G38840
fragaria_vesca FvH4_2g10810 FvH4_2g10820 FvH4_2g10850 FvH4_2g10870 FvH4_3g13730 FvH4_5g22620 FvH4_5g22660 FvH4_5g22690 FvH4_5g22700 FvH4_5g22780 FvH4_5g22790 FvH4_5g22810 FvH4_5g22821 FvH4_5g22822 FvH4_5g24600 FvH4_5g24720
malus_domestica MD05G1051600.v1.1 MD05G1051700.v1.1 MD05G1051800.v1.1 MD05G1052000.v1.1 MD05G1052100.v1.1 MD05G1052200.v1.1 MD05G1052300.v1.1 MD05G1052400.v1.1 MD05G1113300.v1.1 MD10G1059200.v1.1 MD10G1059500.v1.1 MD10G1059600.v1.1 MD10G1059700.v1.1 MD10G1059800.v1.1 MD10G1060100.v1.1 MD10G1060200.v1.1 MD10G1060300.v1.1 MD10G1060400.v1.1 MD10G1060500.v1.1 MD10G1060600.v1.1 MD10G1060700.v1.1 MD10G1060800.v1.1 MD10G1060900.v1.1 MD10G1061000.v1.1 MD10G1061100.v1.1
prunus_persica Prupe.8G078600_v2.0.a1 Prupe.8G078700_v2.0.a1 Prupe.8G078900_v2.0.a1 Prupe.8G079000_v2.0.a1 Prupe.8G079100_v2.0.a1 Prupe.8G079200_v2.0.a1 Prupe.8G079400_v2.0.a1 Prupe.8G079500_v2.0.a1 Prupe.8G079600_v2.0.a1 Prupe.8G079700_v2.0.a1 Prupe.8G079900_v2.0.a1 Prupe.8G080000_v2.0.a1 Prupe.8G080100_v2.0.a1 Prupe.8G080200_v2.0.a1 Prupe.8G080300_v2.0.a1 Prupe.8G080500_v2.0.a1 Prupe.8G080600_v2.0.a1 Prupe.8G080700_v2.0.a1 Prupe.8G080800_v2.0.a1 Prupe.8G081000_v2.0.a1 Prupe.8G081100_v2.0.a1 Prupe.8G081300_v2.0.a1 Prupe.8G081500_v2.0.a1 Prupe.8G081700_v2.0.a1 Prupe.8G157700_v2.0.a1
pyrus_communis pycom05g04350 pycom05g04390 pycom05g04400 pycom05g04410 pycom10g04550 pycom10g04560 pycom10g04570 pycom10g04580 pycom10g04590 pycom10g04600 pycom10g04610 pycom10g04630 pycom10g04640 pycom10g04650 pycom10g04660 pycom10g04680 pycom10g10040
rosa_chinensis RchiOBHm_Chr0c32g0501561 RchiOBHm_Chr2g0124401 RchiOBHm_Chr2g0124451 RchiOBHm_Chr2g0124461 RchiOBHm_Chr2g0124531 RchiOBHm_Chr2g0124561 RchiOBHm_Chr3g0483671 RchiOBHm_Chr3g0483711 RchiOBHm_Chr5g0056801 RchiOBHm_Chr5g0056821 RchiOBHm_Chr5g0056831 RchiOBHm_Chr5g0056841 RchiOBHm_Chr5g0059921 RchiOBHm_Chr6g0268901 RchiOBHm_Chr6g0268941 RchiOBHm_Chr6g0268951 RchiOBHm_Chr6g0268961 RchiOBHm_Chr7g0210461 RchiOBHm_Chr7g0210481 RchiOBHm_Chr7g0210491 RchiOBHm_Chr7g0210511 RchiOBHm_Chr7g0210531 RchiOBHm_Chr7g0210621 RchiOBHm_Chr7g0210641 RchiOBHm_Chr7g0210651 RchiOBHm_Chr7g0210661 RchiOBHm_Chr7g0210711 RchiOBHm_Chr7g0210801 RchiOBHm_Chr7g0210831 RchiOBHm_Chr7g0210851 RchiOBHm_Chr7g0210871 RchiOBHm_Chr7g0210881 RchiOBHm_Chr7g0210891 RchiOBHm_Chr7g0211121 RchiOBHm_Chr7g0211131 RchiOBHm_Chr7g0211151 RchiOBHm_Chr7g0211501 RchiOBHm_Chr7g0211511
rosa_laevigata RLG00000003016 RLG00000003020 RLG00000003021 RLG00000003031 RLG00000003032 RLG00000003033 RLG00000003034 RLG00000003040 RLG00000003041 RLG00000018801 RLG00000035128 RLG00000035129
rosa_multiflora Rmu_co8425977.1_g000001 Rmu_sc0001081.1_g000010 Rmu_sc0001081.1_g000011 Rmu_sc0001303.1_g000001 Rmu_sc0001303.1_g000002 Rmu_sc0001303.1_g000004 Rmu_sc0001303.1_g000007 Rmu_sc0001460.1_g000030 Rmu_sc0001460.1_g000035 Rmu_sc0001460.1_g000041 Rmu_sc0001460.1_g000048 Rmu_sc0002755.1_g000005 Rmu_sc0002755.1_g000011 Rmu_sc0002755.1_g000017 Rmu_sc0002755.1_g000027 Rmu_sc0003765.1_g000020 Rmu_sc0003765.1_g000042 Rmu_sc0003765.1_g000043 Rmu_sc0003765.1_g000048 Rmu_sc0003765.1_g000057 Rmu_sc0003765.1_g000058 Rmu_sc0003807.1_g000013 Rmu_sc0003807.1_g000014 Rmu_sc0003807.1_g000015 Rmu_sc0003807.1_g000018 Rmu_sc0003907.1_g000001 Rmu_sc0005302.1_g000002 Rmu_sc0005302.1_g000003 Rmu_sc0005696.1_g000001 Rmu_sc0005844.1_g000001 Rmu_sc0005844.1_g000002 Rmu_sc0005844.1_g000003 Rmu_sc0008289.1_g000006 Rmu_sc0008289.1_g000008 Rmu_sc0008289.1_g000009 Rmu_sc0008289.1_g000014 Rmu_sc0010535.1_g000012 Rmu_sc0010535.1_g000013 Rmu_sc0010535.1_g000014 Rmu_sc0010535.1_g000015 Rmu_sc0011084.1_g000001 Rmu_sc0011691.1_g000001 Rmu_sc0017239.1_g000001 Rmu_sc0018437.1_g000009 Rmu_sc0018662.1_g000001 Rmu_sc0018662.1_g000003 Rmu_sc0020409.1_g000001 Rmu_sc0024576.1_g000001 Rmu_sc0034951.1_g000001
rosa_roxburghii Rroxscaffold_1G00023480 Rroxscaffold_1G00023490 Rroxscaffold_1G00023570 Rroxscaffold_2G00119860 Rroxscaffold_2G00119910 Rroxscaffold_3G00247990 Rroxscaffold_3G00248000 Rroxscaffold_3G00248010 Rroxscaffold_3G00248060 Rroxscaffold_3G00248070 Rroxscaffold_3G00248090 Rroxscaffold_3G00248100 Rroxscaffold_3G00248210 Rroxscaffold_3G00248230 Rroxscaffold_3G00248240 Rroxscaffold_3G00248270 Rroxscaffold_3G00248290
rosa_rugosa Rorug02G0251000.1 Rorug02G0251100 Rorug02G0251100 Rorug02G0251200 Rorug02G0251300 Rorug05G0302000 Rorug05G0302100 Rorug05G0302400 Rorug05G0302500 Rorug06G0043500 Rorug06G0043600 Rorug06G0043600 Rorug07G0121600 Rorug07G0121700 Rorug07G0121800 Rorug07G0121900 Rorug07G0122300 Rorug07G0122400 Rorug07G0122500 Rorug07G0122600 Rorug07G0122700 Rorug07G0122700 Rorug07G0123100 Rorug07G0123200 Rorug07G0123300 Rorug07G0123600 Rorug07G0123700 Rorug07G0124200 Rorug07G0124300 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124600 Rorug07G0124700
rosa_wichuraiana Rw0G021160 Rw0G021170 Rw2G024970 Rw2G024980 Rw2G025000 Rw2G025020 Rw2G025030 Rw2G025040 Rw2G025050 Rw3G023170 Rw3G023180 Rw5G034930 Rw5G034940 Rw5G034960 Rw5G035050 Rw5G035060 Rw5G035070 Rw6G014100 Rw6G014110 Rw6G014130 Rw6G014140 Rw6G014150 Rw7G021690 Rw7G021700 Rw7G021710 Rw7G021720 Rw7G021740 Rw7G021750 Rw7G021760 Rw7G021770 Rw7G021790 Rw7G021800 Rw7G021810 Rw7G021820 Rw7G021900 Rw7G021910 Rw7G021920 Rw7G021930 Rw7G021940 Rw7G021950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 222, 271
AcsI RAATTY 2 cut(s) 32, 197
AcuI CTGAAG 1 cut(s) 210
AfiI CCNNNNNNNGG 1 cut(s) 221
AflII CTTAAG 1 cut(s) 274
AgsI TTSAA 2 cut(s) 25, 154
AjuI GAANNNNNNNTTGG 4 cut(s) 150, 182, 183, 215
AluBI AGCT 2 cut(s) 65, 188
AluI AGCT 2 cut(s) 65, 188
ApeKI GCWGC 2 cut(s) 5, 8
ApoI RAATTY 2 cut(s) 32, 197
BbsI GAAGAC 1 cut(s) 252
BbvI GCAGC 1 cut(s) 20
BccI CCATC 1 cut(s) 216
BciVI GTATCC 1 cut(s) 197
BfmI CTRYAG 1 cut(s) 6
BfrI CTTAAG 1 cut(s) 274
BfuI GTATCC 1 cut(s) 197
BisI GCNGC 2 cut(s) 6, 9
BlsI GCNGC 2 cut(s) 7, 10
BmiI GGNNCC 1 cut(s) 138
BpiI GAAGAC 1 cut(s) 252
Bsc4I CCNNNNNNNGG 1 cut(s) 221
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 1 cut(s) 221
BseMII CTCAG 1 cut(s) 170
BseXI GCAGC 1 cut(s) 20
BslI CCNNNNNNNGG 1 cut(s) 221
Bsp143I GATC 1 cut(s) 259
BspACI CCGC 2 cut(s) 222, 271
BspCNI CTCAG 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 138
BspMAI CTGCAG 1 cut(s) 10
BspTI CTTAAG 1 cut(s) 274
BssMI GATC 1 cut(s) 259
BstAFI CTTAAG 1 cut(s) 274
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 1 cut(s) 179
BstF5I GGATG 1 cut(s) 211
BstKTI GATC 1 cut(s) 262
BstMBI GATC 1 cut(s) 259
BstNSI RCATGY 1 cut(s) 15
BstSFI CTRYAG 1 cut(s) 6
BstV1I GCAGC 1 cut(s) 20
BstV2I GAAGAC 1 cut(s) 252
BsuI GTATCC 1 cut(s) 197
BtsCI GGATG 1 cut(s) 211
BtsI GCAGTG 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 247
Cac8I GCNNGC 1 cut(s) 13
CviAII CATG 2 cut(s) 12, 40
CviJI RGCY 5 cut(s) 5, 65, 90, 117, 188
CviKI_1 RGCY 5 cut(s) 5, 65, 90, 117, 188
DdeI CTNAG 1 cut(s) 179
DpnI GATC 1 cut(s) 261
DpnII GATC 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 210
FaeI CATG 2 cut(s) 15, 43
FaiI YATR 5 cut(s) 13, 41, 60, 105, 148
FatI CATG 2 cut(s) 11, 39
FauI CCCGC 1 cut(s) 278
Fnu4HI GCNGC 2 cut(s) 6, 9
FokI GGATG 1 cut(s) 198
Fsp4HI GCNGC 2 cut(s) 6, 9
GluI GCNGC 2 cut(s) 6, 9
Hin1II CATG 2 cut(s) 15, 43
HindIII AAGCTT 1 cut(s) 63
HinfI GANTC 1 cut(s) 181
Hpy188III TCNNGA 1 cut(s) 170
HpyAV CCTTC 1 cut(s) 262
HpyCH4V TGCA 3 cut(s) 8, 98, 240
HpyF3I CTNAG 1 cut(s) 179
Hsp92II CATG 2 cut(s) 15, 43
Kzo9I GATC 1 cut(s) 259
LpnPI CCDG 2 cut(s) 131, 155
Lsp1109I GCAGC 1 cut(s) 20
MaeIII GTNAC 1 cut(s) 68
MalI GATC 1 cut(s) 261
MboI GATC 1 cut(s) 259
MboII GAAGA 4 cut(s) 133, 203, 206, 257
MluCI AATT 3 cut(s) 32, 197, 231
MlyI GAGTC 1 cut(s) 190
MmeI TCCRAC 1 cut(s) 88
MseI TTAA 1 cut(s) 275
MspCI CTTAAG 1 cut(s) 274
NdeII GATC 1 cut(s) 259
NlaIII CATG 2 cut(s) 15, 43
NlaIV GGNNCC 1 cut(s) 138
NmuCI GTSAC 1 cut(s) 68
NspI RCATGY 1 cut(s) 15
PaeI GCATGC 1 cut(s) 15
PkrI GCNGC 2 cut(s) 7, 10
PleI GAGTC 1 cut(s) 189
PpsI GAGTC 1 cut(s) 189
PspN4I GGNNCC 1 cut(s) 138
PstI CTGCAG 1 cut(s) 10
SaqAI TTAA 1 cut(s) 275
SatI GCNGC 2 cut(s) 6, 9
Sau3AI GATC 1 cut(s) 259
SchI GAGTC 1 cut(s) 190
SetI ASST 4 cut(s) 67, 163, 190, 254
SfcI CTRYAG 1 cut(s) 6
SgeI CNNG 9 cut(s) 24, 28, 52, 56, 78, 130, 182, 197, 249
SmlI CTYRAG 1 cut(s) 274
SmoI CTYRAG 1 cut(s) 274
SphI GCATGC 1 cut(s) 15
Sse9I AATT 3 cut(s) 32, 197, 231
SsiI CCGC 2 cut(s) 222, 271
TasI AATT 3 cut(s) 32, 197, 231
Tru1I TTAA 1 cut(s) 275
Tru9I TTAA 1 cut(s) 275
TscAI CASTG 1 cut(s) 247
TseFI GTSAC 1 cut(s) 68
TseI GCWGC 2 cut(s) 5, 8
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 2 cut(s) 45, 244
TspRI CASTG 1 cut(s) 247
Vha464I CTTAAG 1 cut(s) 274
XapI RAATTY 2 cut(s) 32, 197
XceI RCATGY 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.