FvH4_5g22821

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000092
Physical Location & Seq
Forward (+)
14129842 .. 14131938
2097 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g22821.t1

Sequence Viewer

Length: 537 bp
ATGGGTTTCCGATTTCCTAAAATTGCTAGCACAAAGACACCAGAGATACCAAAGGGATACTTTGCGGTCTATGTTGGAGTGAGCCAGAAGAAACGATTTGTTGTTCCAATATCATATTTGAACCAACCTTTGTTTCAGGATTTACTGACTCAAGCTGAAGACGAATTTGGATACCATCATCCAATGGGTGGTATCACAATTCCTTGCAGCGAAGACACCTTCATTGATCTCACTTCCCGCTTAAGTGTGCTCCCCAGAATTTCAAACACCAAGAGAAGTCTTACTCGATCTTCATCTAATGGAAACAAGACAGCTCCAAAGTCCTTAGATATCCCAAAAGGCTACTTTGCAGTCTATGTCGGAGAAAGCCAGAAGAAGCGGTTTGTGATTCCAATATCATACTTGAACCAACCTTCATTCATGGATTTGCTGAGTCAAGCTGAAGAAGAATTTGGATACGATCATCCCATGGGTGGCATCACAATCCCCTGCAGTGAAGAAACCTTCCTTGATCTCACTTCAAGCTTAAGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

179

Amino Acids

19.89

Weight (kDa)

6.83

Isoelectric Point (pI)

42.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 10 - 80 2.8e-22 Auxin responsive protein
Auxin_inducible PF02519 92 - 176 3.3e-23 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000092)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21210 AT2G21210 AT3G20220 AT4G34780 AT4G38840
fragaria_vesca FvH4_2g10810 FvH4_2g10820 FvH4_2g10850 FvH4_2g10870 FvH4_3g13730 FvH4_5g22620 FvH4_5g22660 FvH4_5g22690 FvH4_5g22700 FvH4_5g22780 FvH4_5g22790 FvH4_5g22810 FvH4_5g22821 FvH4_5g22822 FvH4_5g24600 FvH4_5g24720
malus_domestica MD05G1051600.v1.1 MD05G1051700.v1.1 MD05G1051800.v1.1 MD05G1052000.v1.1 MD05G1052100.v1.1 MD05G1052200.v1.1 MD05G1052300.v1.1 MD05G1052400.v1.1 MD05G1113300.v1.1 MD10G1059200.v1.1 MD10G1059500.v1.1 MD10G1059600.v1.1 MD10G1059700.v1.1 MD10G1059800.v1.1 MD10G1060100.v1.1 MD10G1060200.v1.1 MD10G1060300.v1.1 MD10G1060400.v1.1 MD10G1060500.v1.1 MD10G1060600.v1.1 MD10G1060700.v1.1 MD10G1060800.v1.1 MD10G1060900.v1.1 MD10G1061000.v1.1 MD10G1061100.v1.1
prunus_persica Prupe.8G078600_v2.0.a1 Prupe.8G078700_v2.0.a1 Prupe.8G078900_v2.0.a1 Prupe.8G079000_v2.0.a1 Prupe.8G079100_v2.0.a1 Prupe.8G079200_v2.0.a1 Prupe.8G079400_v2.0.a1 Prupe.8G079500_v2.0.a1 Prupe.8G079600_v2.0.a1 Prupe.8G079700_v2.0.a1 Prupe.8G079900_v2.0.a1 Prupe.8G080000_v2.0.a1 Prupe.8G080100_v2.0.a1 Prupe.8G080200_v2.0.a1 Prupe.8G080300_v2.0.a1 Prupe.8G080500_v2.0.a1 Prupe.8G080600_v2.0.a1 Prupe.8G080700_v2.0.a1 Prupe.8G080800_v2.0.a1 Prupe.8G081000_v2.0.a1 Prupe.8G081100_v2.0.a1 Prupe.8G081300_v2.0.a1 Prupe.8G081500_v2.0.a1 Prupe.8G081700_v2.0.a1 Prupe.8G157700_v2.0.a1
pyrus_communis pycom05g04350 pycom05g04390 pycom05g04400 pycom05g04410 pycom10g04550 pycom10g04560 pycom10g04570 pycom10g04580 pycom10g04590 pycom10g04600 pycom10g04610 pycom10g04630 pycom10g04640 pycom10g04650 pycom10g04660 pycom10g04680 pycom10g10040
rosa_chinensis RchiOBHm_Chr0c32g0501561 RchiOBHm_Chr2g0124401 RchiOBHm_Chr2g0124451 RchiOBHm_Chr2g0124461 RchiOBHm_Chr2g0124531 RchiOBHm_Chr2g0124561 RchiOBHm_Chr3g0483671 RchiOBHm_Chr3g0483711 RchiOBHm_Chr5g0056801 RchiOBHm_Chr5g0056821 RchiOBHm_Chr5g0056831 RchiOBHm_Chr5g0056841 RchiOBHm_Chr5g0059921 RchiOBHm_Chr6g0268901 RchiOBHm_Chr6g0268941 RchiOBHm_Chr6g0268951 RchiOBHm_Chr6g0268961 RchiOBHm_Chr7g0210461 RchiOBHm_Chr7g0210481 RchiOBHm_Chr7g0210491 RchiOBHm_Chr7g0210511 RchiOBHm_Chr7g0210531 RchiOBHm_Chr7g0210621 RchiOBHm_Chr7g0210641 RchiOBHm_Chr7g0210651 RchiOBHm_Chr7g0210661 RchiOBHm_Chr7g0210711 RchiOBHm_Chr7g0210801 RchiOBHm_Chr7g0210831 RchiOBHm_Chr7g0210851 RchiOBHm_Chr7g0210871 RchiOBHm_Chr7g0210881 RchiOBHm_Chr7g0210891 RchiOBHm_Chr7g0211121 RchiOBHm_Chr7g0211131 RchiOBHm_Chr7g0211151 RchiOBHm_Chr7g0211501 RchiOBHm_Chr7g0211511
rosa_laevigata RLG00000003016 RLG00000003020 RLG00000003021 RLG00000003031 RLG00000003032 RLG00000003033 RLG00000003034 RLG00000003040 RLG00000003041 RLG00000018801 RLG00000035128 RLG00000035129
rosa_multiflora Rmu_co8425977.1_g000001 Rmu_sc0001081.1_g000010 Rmu_sc0001081.1_g000011 Rmu_sc0001303.1_g000001 Rmu_sc0001303.1_g000002 Rmu_sc0001303.1_g000004 Rmu_sc0001303.1_g000007 Rmu_sc0001460.1_g000030 Rmu_sc0001460.1_g000035 Rmu_sc0001460.1_g000041 Rmu_sc0001460.1_g000048 Rmu_sc0002755.1_g000005 Rmu_sc0002755.1_g000011 Rmu_sc0002755.1_g000017 Rmu_sc0002755.1_g000027 Rmu_sc0003765.1_g000020 Rmu_sc0003765.1_g000042 Rmu_sc0003765.1_g000043 Rmu_sc0003765.1_g000048 Rmu_sc0003765.1_g000057 Rmu_sc0003765.1_g000058 Rmu_sc0003807.1_g000013 Rmu_sc0003807.1_g000014 Rmu_sc0003807.1_g000015 Rmu_sc0003807.1_g000018 Rmu_sc0003907.1_g000001 Rmu_sc0005302.1_g000002 Rmu_sc0005302.1_g000003 Rmu_sc0005696.1_g000001 Rmu_sc0005844.1_g000001 Rmu_sc0005844.1_g000002 Rmu_sc0005844.1_g000003 Rmu_sc0008289.1_g000006 Rmu_sc0008289.1_g000008 Rmu_sc0008289.1_g000009 Rmu_sc0008289.1_g000014 Rmu_sc0010535.1_g000012 Rmu_sc0010535.1_g000013 Rmu_sc0010535.1_g000014 Rmu_sc0010535.1_g000015 Rmu_sc0011084.1_g000001 Rmu_sc0011691.1_g000001 Rmu_sc0017239.1_g000001 Rmu_sc0018437.1_g000009 Rmu_sc0018662.1_g000001 Rmu_sc0018662.1_g000003 Rmu_sc0020409.1_g000001 Rmu_sc0024576.1_g000001 Rmu_sc0034951.1_g000001
rosa_roxburghii Rroxscaffold_1G00023480 Rroxscaffold_1G00023490 Rroxscaffold_1G00023570 Rroxscaffold_2G00119860 Rroxscaffold_2G00119910 Rroxscaffold_3G00247990 Rroxscaffold_3G00248000 Rroxscaffold_3G00248010 Rroxscaffold_3G00248060 Rroxscaffold_3G00248070 Rroxscaffold_3G00248090 Rroxscaffold_3G00248100 Rroxscaffold_3G00248210 Rroxscaffold_3G00248230 Rroxscaffold_3G00248240 Rroxscaffold_3G00248270 Rroxscaffold_3G00248290
rosa_rugosa Rorug02G0251000.1 Rorug02G0251100 Rorug02G0251100 Rorug02G0251200 Rorug02G0251300 Rorug05G0302000 Rorug05G0302100 Rorug05G0302400 Rorug05G0302500 Rorug06G0043500 Rorug06G0043600 Rorug06G0043600 Rorug07G0121600 Rorug07G0121700 Rorug07G0121800 Rorug07G0121900 Rorug07G0122300 Rorug07G0122400 Rorug07G0122500 Rorug07G0122600 Rorug07G0122700 Rorug07G0122700 Rorug07G0123100 Rorug07G0123200 Rorug07G0123300 Rorug07G0123600 Rorug07G0123700 Rorug07G0124200 Rorug07G0124300 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124600 Rorug07G0124700
rosa_wichuraiana Rw0G021160 Rw0G021170 Rw2G024970 Rw2G024980 Rw2G025000 Rw2G025020 Rw2G025030 Rw2G025040 Rw2G025050 Rw3G023170 Rw3G023180 Rw5G034930 Rw5G034940 Rw5G034960 Rw5G035050 Rw5G035060 Rw5G035070 Rw6G014100 Rw6G014110 Rw6G014130 Rw6G014140 Rw6G014150 Rw7G021690 Rw7G021700 Rw7G021710 Rw7G021720 Rw7G021740 Rw7G021750 Rw7G021760 Rw7G021770 Rw7G021790 Rw7G021800 Rw7G021810 Rw7G021820 Rw7G021900 Rw7G021910 Rw7G021920 Rw7G021930 Rw7G021940 Rw7G021950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 188
AciI CCGC 3 cut(s) 65, 238, 379
AcsI RAATTY 3 cut(s) 164, 258, 449
AcuI CTGAAG 2 cut(s) 177, 462
AfiI CCNNNNNNNGG 2 cut(s) 188, 473
AflII CTTAAG 2 cut(s) 241, 526
AgsI TTSAA 4 cut(s) 121, 264, 406, 522
AjuI GAANNNNNNNTTGG 6 cut(s) 117, 149, 150, 182, 435, 467
AluBI AGCT 4 cut(s) 155, 314, 440, 525
AluI AGCT 4 cut(s) 155, 314, 440, 525
Alw21I GWGCWC 1 cut(s) 252
ApeKI GCWGC 1 cut(s) 207
ApoI RAATTY 3 cut(s) 164, 258, 449
AsuNHI GCTAGC 1 cut(s) 26
BbsI GAAGAC 2 cut(s) 165, 219
Bbv12I GWGCWC 1 cut(s) 252
BbvI GCAGC 1 cut(s) 219
BccI CCATC 1 cut(s) 183
BciVI GTATCC 3 cut(s) 50, 164, 449
BfaI CTAG 1 cut(s) 27
BfmI CTRYAG 1 cut(s) 490
BfrI CTTAAG 2 cut(s) 241, 526
BfuI GTATCC 3 cut(s) 50, 164, 449
BisI GCNGC 1 cut(s) 208
BlsI GCNGC 1 cut(s) 209
BmsI GCATC 1 cut(s) 486
BmtI GCTAGC 1 cut(s) 30
BpiI GAAGAC 2 cut(s) 165, 219
BpuEI CTTGAG 1 cut(s) 135
BsaBI GATNNNNATC 1 cut(s) 292
BsaJI CCNNGG 1 cut(s) 468
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 473
Bse8I GATNNNNATC 1 cut(s) 292
BseDI CCNNGG 1 cut(s) 468
BseGI GGATG 2 cut(s) 178, 463
BseJI GATNNNNATC 1 cut(s) 292
BseLI CCNNNNNNNGG 2 cut(s) 188, 473
BseMII CTCAG 1 cut(s) 422
BseXI GCAGC 1 cut(s) 219
BsiHKAI GWGCWC 1 cut(s) 252
BslI CCNNNNNNNGG 2 cut(s) 188, 473
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 4 cut(s) 226, 287, 460, 511
Bsp19I CCATGG 1 cut(s) 468
BspACI CCGC 3 cut(s) 65, 238, 379
BspCNI CTCAG 1 cut(s) 423
BspMAI CTGCAG 1 cut(s) 494
BspOI GCTAGC 1 cut(s) 30
BspTI CTTAAG 2 cut(s) 241, 526
BssECI CCNNGG 1 cut(s) 468
BssMI GATC 4 cut(s) 226, 287, 460, 511
BssT1I CCWWGG 1 cut(s) 468
BstAFI CTTAAG 2 cut(s) 241, 526
BstC8I GCNNGC 1 cut(s) 28
BstDEI CTNAG 2 cut(s) 325, 431
BstDSI CCRYGG 1 cut(s) 468
BstF5I GGATG 2 cut(s) 178, 463
BstKTI GATC 4 cut(s) 229, 290, 463, 514
BstMBI GATC 4 cut(s) 226, 287, 460, 511
BstSFI CTRYAG 1 cut(s) 490
BstV1I GCAGC 1 cut(s) 219
BstV2I GAAGAC 2 cut(s) 165, 219
BsuI GTATCC 3 cut(s) 50, 164, 449
BtgI CCRYGG 1 cut(s) 468
BtsCI GGATG 2 cut(s) 178, 463
BtsI GCAGTG 1 cut(s) 499
BtsIMutI CAGTG 1 cut(s) 499
Cac8I GCNNGC 1 cut(s) 28
CviAII CATG 2 cut(s) 421, 469
CviJI RGCY 7 cut(s) 84, 155, 314, 342, 369, 440, 525
CviKI_1 RGCY 7 cut(s) 84, 155, 314, 342, 369, 440, 525
DdeI CTNAG 2 cut(s) 325, 431
DpnI GATC 4 cut(s) 228, 289, 462, 513
DpnII GATC 4 cut(s) 226, 287, 460, 511
Eco130I CCWWGG 1 cut(s) 468
Eco32I GATATC 1 cut(s) 331
Eco57I CTGAAG 2 cut(s) 177, 462
EcoRV GATATC 1 cut(s) 331
EcoT14I CCWWGG 1 cut(s) 468
ErhI CCWWGG 1 cut(s) 468
FaeI CATG 2 cut(s) 424, 472
FaiI YATR 6 cut(s) 72, 115, 357, 400, 422, 470
FalI AAGNNNNNCTT 2 cut(s) 44, 76
FatI CATG 2 cut(s) 420, 468
FauI CCCGC 1 cut(s) 245
Fnu4HI GCNGC 1 cut(s) 208
FokI GGATG 2 cut(s) 165, 450
Fsp4HI GCNGC 1 cut(s) 208
FspBI CTAG 1 cut(s) 27
GluI GCNGC 1 cut(s) 208
Hin1II CATG 2 cut(s) 424, 472
HindIII AAGCTT 1 cut(s) 523
HinfI GANTC 3 cut(s) 148, 388, 433
Hpy188I TCNGA 2 cut(s) 11, 362
Hpy188III TCNNGA 1 cut(s) 137
HpyAV CCTTC 3 cut(s) 229, 423, 514
HpyCH4V TGCA 3 cut(s) 207, 350, 492
HpyF3I CTNAG 2 cut(s) 325, 431
Hsp92II CATG 2 cut(s) 424, 472
Kzo9I GATC 4 cut(s) 226, 287, 460, 511
LmnI GCTCC 2 cut(s) 255, 319
LpnPI CCDG 6 cut(s) 54, 98, 122, 268, 383, 502
Lsp1109I GCAGC 1 cut(s) 219
LweI GCATC 1 cut(s) 486
MaeI CTAG 1 cut(s) 27
MalI GATC 4 cut(s) 228, 289, 462, 513
MboI GATC 4 cut(s) 226, 287, 460, 511
MboII GAAGA 8 cut(s) 100, 170, 224, 282, 385, 455, 458, 509
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 5 cut(s) 21, 164, 198, 258, 449
MlyI GAGTC 2 cut(s) 142, 442
MmeI TCCRAC 2 cut(s) 55, 340
MseI TTAA 2 cut(s) 242, 527
MspCI CTTAAG 2 cut(s) 241, 526
NcoI CCATGG 1 cut(s) 468
NdeII GATC 4 cut(s) 226, 287, 460, 511
NheI GCTAGC 1 cut(s) 26
NlaIII CATG 2 cut(s) 424, 472
PfeI GAWTC 1 cut(s) 388
PflMI CCANNNNNTGG 1 cut(s) 188
PkrI GCNGC 1 cut(s) 209
PleI GAGTC 2 cut(s) 142, 441
PpsI GAGTC 2 cut(s) 142, 441
PstI CTGCAG 1 cut(s) 494
SaqAI TTAA 2 cut(s) 242, 527
SatI GCNGC 1 cut(s) 208
Sau3AI GATC 4 cut(s) 226, 287, 460, 511
SchI GAGTC 2 cut(s) 142, 442
SduI GDGCHC 1 cut(s) 252
SetI ASST 8 cut(s) 130, 157, 221, 316, 415, 442, 506, 527
SfaNI GCATC 1 cut(s) 486
SfcI CTRYAG 1 cut(s) 490
SmlI CTYRAG 3 cut(s) 150, 241, 526
SmoI CTYRAG 3 cut(s) 150, 241, 526
Sse9I AATT 5 cut(s) 21, 164, 198, 258, 449
SsiI CCGC 3 cut(s) 65, 238, 379
SspMI CTAG 1 cut(s) 27
StyI CCWWGG 1 cut(s) 468
TaqI TCGA 1 cut(s) 286
TasI AATT 5 cut(s) 21, 164, 198, 258, 449
TfiI GAWTC 1 cut(s) 388
Tru1I TTAA 2 cut(s) 242, 527
Tru9I TTAA 2 cut(s) 242, 527
TscAI CASTG 1 cut(s) 499
TseI GCWGC 1 cut(s) 207
TspDTI ATGAA 4 cut(s) 211, 282, 405, 409
TspRI CASTG 1 cut(s) 499
Van91I CCANNNNNTGG 1 cut(s) 188
Vha464I CTTAAG 2 cut(s) 241, 526
XapI RAATTY 3 cut(s) 164, 258, 449
XspI CTAG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.