Rw2G025000

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000092
Physical Location & Seq
Reverse (-)
37135533 .. 37137692
2160 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G025000.1

Sequence Viewer

Length: 327 bp
ATGGGTTTTCGATTGCCTCGAATTGCTAGCACAAAGACATCAGATATCCCAAAAGGCTACTTTGCAGTCTATGTTGGAGAGAGCCAAAAGAAACGATTTGTGGTTCCAATATCATATTTGAACCAACCTTTGTTTCAGAATTTGCTGAGTCAAGCTGAAGAAGAATTTGGATACCATCATCCAATGGCCATGGGTTTCAAGCTGCCTGGAATTGTTAGCCCCAAAAGAACTGAAGAAGAATTTGGATACCATCATCCCATGGGCGGTATCACAATTCCATGCAGTGAGGACACCTTCCTTGATCTCACTTCCAACTTAAGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

108

Amino Acids

12.17

Weight (kDa)

6.4

Isoelectric Point (pI)

39.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 10 - 62 1.1e-18 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000092)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21210 AT2G21210 AT3G20220 AT4G34780 AT4G38840
fragaria_vesca FvH4_2g10810 FvH4_2g10820 FvH4_2g10850 FvH4_2g10870 FvH4_3g13730 FvH4_5g22620 FvH4_5g22660 FvH4_5g22690 FvH4_5g22700 FvH4_5g22780 FvH4_5g22790 FvH4_5g22810 FvH4_5g22821 FvH4_5g22822 FvH4_5g24600 FvH4_5g24720
malus_domestica MD05G1051600.v1.1 MD05G1051700.v1.1 MD05G1051800.v1.1 MD05G1052000.v1.1 MD05G1052100.v1.1 MD05G1052200.v1.1 MD05G1052300.v1.1 MD05G1052400.v1.1 MD05G1113300.v1.1 MD10G1059200.v1.1 MD10G1059500.v1.1 MD10G1059600.v1.1 MD10G1059700.v1.1 MD10G1059800.v1.1 MD10G1060100.v1.1 MD10G1060200.v1.1 MD10G1060300.v1.1 MD10G1060400.v1.1 MD10G1060500.v1.1 MD10G1060600.v1.1 MD10G1060700.v1.1 MD10G1060800.v1.1 MD10G1060900.v1.1 MD10G1061000.v1.1 MD10G1061100.v1.1
prunus_persica Prupe.8G078600_v2.0.a1 Prupe.8G078700_v2.0.a1 Prupe.8G078900_v2.0.a1 Prupe.8G079000_v2.0.a1 Prupe.8G079100_v2.0.a1 Prupe.8G079200_v2.0.a1 Prupe.8G079400_v2.0.a1 Prupe.8G079500_v2.0.a1 Prupe.8G079600_v2.0.a1 Prupe.8G079700_v2.0.a1 Prupe.8G079900_v2.0.a1 Prupe.8G080000_v2.0.a1 Prupe.8G080100_v2.0.a1 Prupe.8G080200_v2.0.a1 Prupe.8G080300_v2.0.a1 Prupe.8G080500_v2.0.a1 Prupe.8G080600_v2.0.a1 Prupe.8G080700_v2.0.a1 Prupe.8G080800_v2.0.a1 Prupe.8G081000_v2.0.a1 Prupe.8G081100_v2.0.a1 Prupe.8G081300_v2.0.a1 Prupe.8G081500_v2.0.a1 Prupe.8G081700_v2.0.a1 Prupe.8G157700_v2.0.a1
pyrus_communis pycom05g04350 pycom05g04390 pycom05g04400 pycom05g04410 pycom10g04550 pycom10g04560 pycom10g04570 pycom10g04580 pycom10g04590 pycom10g04600 pycom10g04610 pycom10g04630 pycom10g04640 pycom10g04650 pycom10g04660 pycom10g04680 pycom10g10040
rosa_chinensis RchiOBHm_Chr0c32g0501561 RchiOBHm_Chr2g0124401 RchiOBHm_Chr2g0124451 RchiOBHm_Chr2g0124461 RchiOBHm_Chr2g0124531 RchiOBHm_Chr2g0124561 RchiOBHm_Chr3g0483671 RchiOBHm_Chr3g0483711 RchiOBHm_Chr5g0056801 RchiOBHm_Chr5g0056821 RchiOBHm_Chr5g0056831 RchiOBHm_Chr5g0056841 RchiOBHm_Chr5g0059921 RchiOBHm_Chr6g0268901 RchiOBHm_Chr6g0268941 RchiOBHm_Chr6g0268951 RchiOBHm_Chr6g0268961 RchiOBHm_Chr7g0210461 RchiOBHm_Chr7g0210481 RchiOBHm_Chr7g0210491 RchiOBHm_Chr7g0210511 RchiOBHm_Chr7g0210531 RchiOBHm_Chr7g0210621 RchiOBHm_Chr7g0210641 RchiOBHm_Chr7g0210651 RchiOBHm_Chr7g0210661 RchiOBHm_Chr7g0210711 RchiOBHm_Chr7g0210801 RchiOBHm_Chr7g0210831 RchiOBHm_Chr7g0210851 RchiOBHm_Chr7g0210871 RchiOBHm_Chr7g0210881 RchiOBHm_Chr7g0210891 RchiOBHm_Chr7g0211121 RchiOBHm_Chr7g0211131 RchiOBHm_Chr7g0211151 RchiOBHm_Chr7g0211501 RchiOBHm_Chr7g0211511
rosa_laevigata RLG00000003016 RLG00000003020 RLG00000003021 RLG00000003031 RLG00000003032 RLG00000003033 RLG00000003034 RLG00000003040 RLG00000003041 RLG00000018801 RLG00000035128 RLG00000035129
rosa_multiflora Rmu_co8425977.1_g000001 Rmu_sc0001081.1_g000010 Rmu_sc0001081.1_g000011 Rmu_sc0001303.1_g000001 Rmu_sc0001303.1_g000002 Rmu_sc0001303.1_g000004 Rmu_sc0001303.1_g000007 Rmu_sc0001460.1_g000030 Rmu_sc0001460.1_g000035 Rmu_sc0001460.1_g000041 Rmu_sc0001460.1_g000048 Rmu_sc0002755.1_g000005 Rmu_sc0002755.1_g000011 Rmu_sc0002755.1_g000017 Rmu_sc0002755.1_g000027 Rmu_sc0003765.1_g000020 Rmu_sc0003765.1_g000042 Rmu_sc0003765.1_g000043 Rmu_sc0003765.1_g000048 Rmu_sc0003765.1_g000057 Rmu_sc0003765.1_g000058 Rmu_sc0003807.1_g000013 Rmu_sc0003807.1_g000014 Rmu_sc0003807.1_g000015 Rmu_sc0003807.1_g000018 Rmu_sc0003907.1_g000001 Rmu_sc0005302.1_g000002 Rmu_sc0005302.1_g000003 Rmu_sc0005696.1_g000001 Rmu_sc0005844.1_g000001 Rmu_sc0005844.1_g000002 Rmu_sc0005844.1_g000003 Rmu_sc0008289.1_g000006 Rmu_sc0008289.1_g000008 Rmu_sc0008289.1_g000009 Rmu_sc0008289.1_g000014 Rmu_sc0010535.1_g000012 Rmu_sc0010535.1_g000013 Rmu_sc0010535.1_g000014 Rmu_sc0010535.1_g000015 Rmu_sc0011084.1_g000001 Rmu_sc0011691.1_g000001 Rmu_sc0017239.1_g000001 Rmu_sc0018437.1_g000009 Rmu_sc0018662.1_g000001 Rmu_sc0018662.1_g000003 Rmu_sc0020409.1_g000001 Rmu_sc0024576.1_g000001 Rmu_sc0034951.1_g000001
rosa_roxburghii Rroxscaffold_1G00023480 Rroxscaffold_1G00023490 Rroxscaffold_1G00023570 Rroxscaffold_2G00119860 Rroxscaffold_2G00119910 Rroxscaffold_3G00247990 Rroxscaffold_3G00248000 Rroxscaffold_3G00248010 Rroxscaffold_3G00248060 Rroxscaffold_3G00248070 Rroxscaffold_3G00248090 Rroxscaffold_3G00248100 Rroxscaffold_3G00248210 Rroxscaffold_3G00248230 Rroxscaffold_3G00248240 Rroxscaffold_3G00248270 Rroxscaffold_3G00248290
rosa_rugosa Rorug02G0251000.1 Rorug02G0251100 Rorug02G0251100 Rorug02G0251200 Rorug02G0251300 Rorug05G0302000 Rorug05G0302100 Rorug05G0302400 Rorug05G0302500 Rorug06G0043500 Rorug06G0043600 Rorug06G0043600 Rorug07G0121600 Rorug07G0121700 Rorug07G0121800 Rorug07G0121900 Rorug07G0122300 Rorug07G0122400 Rorug07G0122500 Rorug07G0122600 Rorug07G0122700 Rorug07G0122700 Rorug07G0123100 Rorug07G0123200 Rorug07G0123300 Rorug07G0123600 Rorug07G0123700 Rorug07G0124200 Rorug07G0124300 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124600 Rorug07G0124700
rosa_wichuraiana Rw0G021160 Rw0G021170 Rw2G024970 Rw2G024980 Rw2G025000 Rw2G025020 Rw2G025030 Rw2G025040 Rw2G025050 Rw3G023170 Rw3G023180 Rw5G034930 Rw5G034940 Rw5G034960 Rw5G035050 Rw5G035060 Rw5G035070 Rw6G014100 Rw6G014110 Rw6G014130 Rw6G014140 Rw6G014150 Rw7G021690 Rw7G021700 Rw7G021710 Rw7G021720 Rw7G021740 Rw7G021750 Rw7G021760 Rw7G021770 Rw7G021790 Rw7G021800 Rw7G021810 Rw7G021820 Rw7G021900 Rw7G021910 Rw7G021920 Rw7G021930 Rw7G021940 Rw7G021950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 264
AcoI YGGCCR 1 cut(s) 186
AcsI RAATTY 3 cut(s) 139, 164, 239
AcuI CTGAAG 2 cut(s) 177, 252
AfiI CCNNNNNNNGG 1 cut(s) 263
AflII CTTAAG 1 cut(s) 316
AgsI TTSAA 2 cut(s) 121, 199
AjnI CCWGG 1 cut(s) 205
AjuI GAANNNNNNNTTGG 6 cut(s) 117, 149, 150, 182, 225, 257
AluBI AGCT 2 cut(s) 155, 202
AluI AGCT 2 cut(s) 155, 202
AoxI GGCC 1 cut(s) 186
ApeKI GCWGC 1 cut(s) 202
ApoI RAATTY 3 cut(s) 139, 164, 239
AsuNHI GCTAGC 1 cut(s) 26
BalI TGGCCA 1 cut(s) 188
BbvI GCAGC 1 cut(s) 189
BccI CCATC 2 cut(s) 183, 258
BciT130I CCWGG 1 cut(s) 207
BciVI GTATCC 2 cut(s) 164, 239
BfaI CTAG 1 cut(s) 27
BfrI CTTAAG 1 cut(s) 316
BfuI GTATCC 2 cut(s) 164, 239
BisI GCNGC 1 cut(s) 203
BlsI GCNGC 1 cut(s) 204
Bme1390I CCNGG 1 cut(s) 207
BmiI GGNNCC 1 cut(s) 105
BmrFI CCNGG 1 cut(s) 207
BmtI GCTAGC 1 cut(s) 30
BsaJI CCNNGG 2 cut(s) 189, 258
Bsc4I CCNNNNNNNGG 1 cut(s) 263
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 2 cut(s) 189, 258
BseGI GGATG 2 cut(s) 178, 253
BseLI CCNNNNNNNGG 1 cut(s) 263
BseMII CTCAG 1 cut(s) 137
BseXI GCAGC 1 cut(s) 189
BshFI GGCC 1 cut(s) 188
BslI CCNNNNNNNGG 1 cut(s) 263
BsnI GGCC 1 cut(s) 188
Bsp143I GATC 1 cut(s) 301
Bsp19I CCATGG 2 cut(s) 189, 258
BspACI CCGC 1 cut(s) 264
BspANI GGCC 1 cut(s) 188
BspCNI CTCAG 1 cut(s) 138
BspLI GGNNCC 1 cut(s) 105
BspOI GCTAGC 1 cut(s) 30
BspTI CTTAAG 1 cut(s) 316
BssECI CCNNGG 2 cut(s) 189, 258
BssMI GATC 1 cut(s) 301
BssT1I CCWWGG 2 cut(s) 189, 258
Bst2UI CCWGG 1 cut(s) 207
BstAFI CTTAAG 1 cut(s) 316
BstC8I GCNNGC 1 cut(s) 28
BstDEI CTNAG 1 cut(s) 146
BstDSI CCRYGG 2 cut(s) 189, 258
BstF5I GGATG 2 cut(s) 178, 253
BstKTI GATC 1 cut(s) 304
BstMBI GATC 1 cut(s) 301
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 205
BstV1I GCAGC 1 cut(s) 189
BsuI GTATCC 2 cut(s) 164, 239
BsuRI GGCC 1 cut(s) 188
BtgI CCRYGG 2 cut(s) 189, 258
BtsCI GGATG 2 cut(s) 178, 253
BtsI GCAGTG 1 cut(s) 289
BtsIMutI CAGTG 1 cut(s) 289
Cac8I GCNNGC 1 cut(s) 28
CviAII CATG 3 cut(s) 190, 259, 279
CviJI RGCY 6 cut(s) 57, 84, 155, 188, 202, 219
CviKI_1 RGCY 6 cut(s) 57, 84, 155, 188, 202, 219
DdeI CTNAG 1 cut(s) 146
DpnI GATC 1 cut(s) 303
DpnII GATC 1 cut(s) 301
EaeI YGGCCR 1 cut(s) 186
Eco130I CCWWGG 2 cut(s) 189, 258
Eco32I GATATC 1 cut(s) 46
Eco57I CTGAAG 2 cut(s) 177, 252
EcoRII CCWGG 1 cut(s) 205
EcoRV GATATC 1 cut(s) 46
EcoT14I CCWWGG 2 cut(s) 189, 258
ErhI CCWWGG 2 cut(s) 189, 258
FaeI CATG 3 cut(s) 193, 262, 282
FaiI YATR 5 cut(s) 72, 115, 191, 260, 280
FatI CATG 3 cut(s) 189, 258, 278
Fnu4HI GCNGC 1 cut(s) 203
FokI GGATG 2 cut(s) 165, 240
Fsp4HI GCNGC 1 cut(s) 203
FspBI CTAG 1 cut(s) 27
GluI GCNGC 1 cut(s) 203
HaeIII GGCC 1 cut(s) 188
Hin1II CATG 3 cut(s) 193, 262, 282
HinfI GANTC 1 cut(s) 148
Hpy188I TCNGA 2 cut(s) 43, 138
HpyAV CCTTC 1 cut(s) 304
HpyCH4V TGCA 2 cut(s) 65, 282
HpyF3I CTNAG 1 cut(s) 146
Hsp92II CATG 3 cut(s) 193, 262, 282
Kzo9I GATC 1 cut(s) 301
LpnPI CCDG 2 cut(s) 192, 219
Lsp1109I GCAGC 1 cut(s) 189
MaeI CTAG 1 cut(s) 27
MalI GATC 1 cut(s) 303
MboI GATC 1 cut(s) 301
MboII GAAGA 4 cut(s) 170, 173, 245, 248
MlsI TGGCCA 1 cut(s) 188
MluCI AATT 6 cut(s) 21, 139, 164, 210, 239, 273
MluNI TGGCCA 1 cut(s) 188
MlyI GAGTC 1 cut(s) 157
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 2 cut(s) 27, 280
Mox20I TGGCCA 1 cut(s) 188
MscI TGGCCA 1 cut(s) 188
MseI TTAA 1 cut(s) 317
Msp20I TGGCCA 1 cut(s) 188
MspCI CTTAAG 1 cut(s) 316
MspR9I CCNGG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 207
NcoI CCATGG 2 cut(s) 189, 258
NdeII GATC 1 cut(s) 301
NheI GCTAGC 1 cut(s) 26
NlaIII CATG 3 cut(s) 193, 262, 282
NlaIV GGNNCC 1 cut(s) 105
PcsI WCGNNNNNNNCGW 1 cut(s) 16
PkrI GCNGC 1 cut(s) 204
PleI GAGTC 1 cut(s) 156
PpsI GAGTC 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 105
SaqAI TTAA 1 cut(s) 317
SatI GCNGC 1 cut(s) 203
Sau3AI GATC 1 cut(s) 301
SchI GAGTC 1 cut(s) 157
ScrFI CCNGG 1 cut(s) 207
SetI ASST 4 cut(s) 130, 157, 204, 296
SmlI CTYRAG 1 cut(s) 316
SmoI CTYRAG 1 cut(s) 316
Sse9I AATT 6 cut(s) 21, 139, 164, 210, 239, 273
SsiI CCGC 1 cut(s) 264
SspMI CTAG 1 cut(s) 27
StyD4I CCNGG 1 cut(s) 205
StyI CCWWGG 2 cut(s) 189, 258
TaqI TCGA 2 cut(s) 10, 19
TasI AATT 6 cut(s) 21, 139, 164, 210, 239, 273
Tru1I TTAA 1 cut(s) 317
Tru9I TTAA 1 cut(s) 317
TscAI CASTG 1 cut(s) 289
TseI GCWGC 1 cut(s) 202
TspRI CASTG 1 cut(s) 289
Vha464I CTTAAG 1 cut(s) 316
XapI RAATTY 3 cut(s) 139, 164, 239
XspI CTAG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.