FvH4_2g10850

SAUR-like auxin-responsive protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000092
Physical Location & Seq
Reverse (-)
9542767 .. 9543333
567 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g10850.t1

Sequence Viewer

Length: 405 bp
ATGAAGAAACAAAGCCACATGGTGGGGGGGGGCTTGATGTTCCTGGATGAAATTTTGTGCAATCAATGGGAAGGCATAAGCATAAGTCTTTCCACTTCATTCTACCTGAAAGATACAGACATGGGTTTTCGGTTACCAGCAATCACTAGTGCCAAGAAAAGTCTTTCCAGATCTCTATCTGGTTCAAAGACATTAGATATCCCTAAAGGCTACTTTGCAGTGTATGTTGGAGAGAGCCAGAAGAAACGATTTGTGGTTCCAATATCATACTTGAACCATCCTTCATTCCAAGATTTGTTGAGGCAAGCAGAAGAAGAATTTGGATTTGATCATCCCATGGGCGGTATCACCATCCCTTGCAGCGAGCACACCTTTGTTGAACTCACTTCAAGCTTAAGTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

135

Amino Acids

14.95

Weight (kDa)

6.07

Isoelectric Point (pI)

43.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 56 - 132 2.1e-25 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000092)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21210 AT2G21210 AT3G20220 AT4G34780 AT4G38840
fragaria_vesca FvH4_2g10810 FvH4_2g10820 FvH4_2g10850 FvH4_2g10870 FvH4_3g13730 FvH4_5g22620 FvH4_5g22660 FvH4_5g22690 FvH4_5g22700 FvH4_5g22780 FvH4_5g22790 FvH4_5g22810 FvH4_5g22821 FvH4_5g22822 FvH4_5g24600 FvH4_5g24720
malus_domestica MD05G1051600.v1.1 MD05G1051700.v1.1 MD05G1051800.v1.1 MD05G1052000.v1.1 MD05G1052100.v1.1 MD05G1052200.v1.1 MD05G1052300.v1.1 MD05G1052400.v1.1 MD05G1113300.v1.1 MD10G1059200.v1.1 MD10G1059500.v1.1 MD10G1059600.v1.1 MD10G1059700.v1.1 MD10G1059800.v1.1 MD10G1060100.v1.1 MD10G1060200.v1.1 MD10G1060300.v1.1 MD10G1060400.v1.1 MD10G1060500.v1.1 MD10G1060600.v1.1 MD10G1060700.v1.1 MD10G1060800.v1.1 MD10G1060900.v1.1 MD10G1061000.v1.1 MD10G1061100.v1.1
prunus_persica Prupe.8G078600_v2.0.a1 Prupe.8G078700_v2.0.a1 Prupe.8G078900_v2.0.a1 Prupe.8G079000_v2.0.a1 Prupe.8G079100_v2.0.a1 Prupe.8G079200_v2.0.a1 Prupe.8G079400_v2.0.a1 Prupe.8G079500_v2.0.a1 Prupe.8G079600_v2.0.a1 Prupe.8G079700_v2.0.a1 Prupe.8G079900_v2.0.a1 Prupe.8G080000_v2.0.a1 Prupe.8G080100_v2.0.a1 Prupe.8G080200_v2.0.a1 Prupe.8G080300_v2.0.a1 Prupe.8G080500_v2.0.a1 Prupe.8G080600_v2.0.a1 Prupe.8G080700_v2.0.a1 Prupe.8G080800_v2.0.a1 Prupe.8G081000_v2.0.a1 Prupe.8G081100_v2.0.a1 Prupe.8G081300_v2.0.a1 Prupe.8G081500_v2.0.a1 Prupe.8G081700_v2.0.a1 Prupe.8G157700_v2.0.a1
pyrus_communis pycom05g04350 pycom05g04390 pycom05g04400 pycom05g04410 pycom10g04550 pycom10g04560 pycom10g04570 pycom10g04580 pycom10g04590 pycom10g04600 pycom10g04610 pycom10g04630 pycom10g04640 pycom10g04650 pycom10g04660 pycom10g04680 pycom10g10040
rosa_chinensis RchiOBHm_Chr0c32g0501561 RchiOBHm_Chr2g0124401 RchiOBHm_Chr2g0124451 RchiOBHm_Chr2g0124461 RchiOBHm_Chr2g0124531 RchiOBHm_Chr2g0124561 RchiOBHm_Chr3g0483671 RchiOBHm_Chr3g0483711 RchiOBHm_Chr5g0056801 RchiOBHm_Chr5g0056821 RchiOBHm_Chr5g0056831 RchiOBHm_Chr5g0056841 RchiOBHm_Chr5g0059921 RchiOBHm_Chr6g0268901 RchiOBHm_Chr6g0268941 RchiOBHm_Chr6g0268951 RchiOBHm_Chr6g0268961 RchiOBHm_Chr7g0210461 RchiOBHm_Chr7g0210481 RchiOBHm_Chr7g0210491 RchiOBHm_Chr7g0210511 RchiOBHm_Chr7g0210531 RchiOBHm_Chr7g0210621 RchiOBHm_Chr7g0210641 RchiOBHm_Chr7g0210651 RchiOBHm_Chr7g0210661 RchiOBHm_Chr7g0210711 RchiOBHm_Chr7g0210801 RchiOBHm_Chr7g0210831 RchiOBHm_Chr7g0210851 RchiOBHm_Chr7g0210871 RchiOBHm_Chr7g0210881 RchiOBHm_Chr7g0210891 RchiOBHm_Chr7g0211121 RchiOBHm_Chr7g0211131 RchiOBHm_Chr7g0211151 RchiOBHm_Chr7g0211501 RchiOBHm_Chr7g0211511
rosa_laevigata RLG00000003016 RLG00000003020 RLG00000003021 RLG00000003031 RLG00000003032 RLG00000003033 RLG00000003034 RLG00000003040 RLG00000003041 RLG00000018801 RLG00000035128 RLG00000035129
rosa_multiflora Rmu_co8425977.1_g000001 Rmu_sc0001081.1_g000010 Rmu_sc0001081.1_g000011 Rmu_sc0001303.1_g000001 Rmu_sc0001303.1_g000002 Rmu_sc0001303.1_g000004 Rmu_sc0001303.1_g000007 Rmu_sc0001460.1_g000030 Rmu_sc0001460.1_g000035 Rmu_sc0001460.1_g000041 Rmu_sc0001460.1_g000048 Rmu_sc0002755.1_g000005 Rmu_sc0002755.1_g000011 Rmu_sc0002755.1_g000017 Rmu_sc0002755.1_g000027 Rmu_sc0003765.1_g000020 Rmu_sc0003765.1_g000042 Rmu_sc0003765.1_g000043 Rmu_sc0003765.1_g000048 Rmu_sc0003765.1_g000057 Rmu_sc0003765.1_g000058 Rmu_sc0003807.1_g000013 Rmu_sc0003807.1_g000014 Rmu_sc0003807.1_g000015 Rmu_sc0003807.1_g000018 Rmu_sc0003907.1_g000001 Rmu_sc0005302.1_g000002 Rmu_sc0005302.1_g000003 Rmu_sc0005696.1_g000001 Rmu_sc0005844.1_g000001 Rmu_sc0005844.1_g000002 Rmu_sc0005844.1_g000003 Rmu_sc0008289.1_g000006 Rmu_sc0008289.1_g000008 Rmu_sc0008289.1_g000009 Rmu_sc0008289.1_g000014 Rmu_sc0010535.1_g000012 Rmu_sc0010535.1_g000013 Rmu_sc0010535.1_g000014 Rmu_sc0010535.1_g000015 Rmu_sc0011084.1_g000001 Rmu_sc0011691.1_g000001 Rmu_sc0017239.1_g000001 Rmu_sc0018437.1_g000009 Rmu_sc0018662.1_g000001 Rmu_sc0018662.1_g000003 Rmu_sc0020409.1_g000001 Rmu_sc0024576.1_g000001 Rmu_sc0034951.1_g000001
rosa_roxburghii Rroxscaffold_1G00023480 Rroxscaffold_1G00023490 Rroxscaffold_1G00023570 Rroxscaffold_2G00119860 Rroxscaffold_2G00119910 Rroxscaffold_3G00247990 Rroxscaffold_3G00248000 Rroxscaffold_3G00248010 Rroxscaffold_3G00248060 Rroxscaffold_3G00248070 Rroxscaffold_3G00248090 Rroxscaffold_3G00248100 Rroxscaffold_3G00248210 Rroxscaffold_3G00248230 Rroxscaffold_3G00248240 Rroxscaffold_3G00248270 Rroxscaffold_3G00248290
rosa_rugosa Rorug02G0251000.1 Rorug02G0251100 Rorug02G0251100 Rorug02G0251200 Rorug02G0251300 Rorug05G0302000 Rorug05G0302100 Rorug05G0302400 Rorug05G0302500 Rorug06G0043500 Rorug06G0043600 Rorug06G0043600 Rorug07G0121600 Rorug07G0121700 Rorug07G0121800 Rorug07G0121900 Rorug07G0122300 Rorug07G0122400 Rorug07G0122500 Rorug07G0122600 Rorug07G0122700 Rorug07G0122700 Rorug07G0123100 Rorug07G0123200 Rorug07G0123300 Rorug07G0123600 Rorug07G0123700 Rorug07G0124200 Rorug07G0124300 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124600 Rorug07G0124700
rosa_wichuraiana Rw0G021160 Rw0G021170 Rw2G024970 Rw2G024980 Rw2G025000 Rw2G025020 Rw2G025030 Rw2G025040 Rw2G025050 Rw3G023170 Rw3G023180 Rw5G034930 Rw5G034940 Rw5G034960 Rw5G035050 Rw5G035060 Rw5G035070 Rw6G014100 Rw6G014110 Rw6G014130 Rw6G014140 Rw6G014150 Rw7G021690 Rw7G021700 Rw7G021710 Rw7G021720 Rw7G021740 Rw7G021750 Rw7G021760 Rw7G021770 Rw7G021790 Rw7G021800 Rw7G021810 Rw7G021820 Rw7G021900 Rw7G021910 Rw7G021920 Rw7G021930 Rw7G021940 Rw7G021950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 22
AciI CCGC 1 cut(s) 342
AcsI RAATTY 2 cut(s) 51, 317
AdeI CACNNNGTG 1 cut(s) 22
AfiI CCNNNNNNNGG 2 cut(s) 22, 341
AflII CTTAAG 1 cut(s) 394
AgsI TTSAA 4 cut(s) 186, 274, 380, 390
AhlI ACTAGT 1 cut(s) 146
AjnI CCWGG 1 cut(s) 42
AjuI GAANNNNNNNTTGG 2 cut(s) 303, 335
AluBI AGCT 1 cut(s) 393
AluI AGCT 1 cut(s) 393
Alw21I GWGCWC 1 cut(s) 369
ApeKI GCWGC 1 cut(s) 360
ApoI RAATTY 2 cut(s) 51, 317
AsuHPI GGTGA 1 cut(s) 340
Bbv12I GWGCWC 1 cut(s) 369
BbvI GCAGC 1 cut(s) 372
BccI CCATC 2 cut(s) 285, 359
BciT130I CCWGG 1 cut(s) 44
BclI TGATCA 1 cut(s) 328
BcuI ACTAGT 1 cut(s) 146
BfaI CTAG 1 cut(s) 147
BfrI CTTAAG 1 cut(s) 394
BglII AGATCT 1 cut(s) 170
BisI GCNGC 1 cut(s) 361
BlsI GCNGC 1 cut(s) 362
Bme1390I CCNGG 1 cut(s) 44
BmiI GGNNCC 1 cut(s) 258
BmrFI CCNGG 1 cut(s) 44
BsaBI GATNNNNATC 1 cut(s) 175
BsaJI CCNNGG 1 cut(s) 336
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 341
Bse8I GATNNNNATC 1 cut(s) 175
BseBI CCWGG 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 336
BseGI GGATG 4 cut(s) 52, 277, 331, 351
BseJI GATNNNNATC 1 cut(s) 175
BseLI CCNNNNNNNGG 2 cut(s) 22, 341
BseXI GCAGC 1 cut(s) 372
BsiHKAI GWGCWC 1 cut(s) 369
BslI CCNNNNNNNGG 2 cut(s) 22, 341
Bsp1286I GDGCHC 1 cut(s) 369
Bsp143I GATC 2 cut(s) 170, 328
Bsp19I CCATGG 1 cut(s) 336
BspACI CCGC 1 cut(s) 342
BspLI GGNNCC 1 cut(s) 258
BspTI CTTAAG 1 cut(s) 394
BssECI CCNNGG 1 cut(s) 336
BssMI GATC 2 cut(s) 170, 328
BssT1I CCWWGG 1 cut(s) 336
Bst2UI CCWGG 1 cut(s) 44
BstAFI CTTAAG 1 cut(s) 394
BstC8I GCNNGC 2 cut(s) 306, 365
BstDSI CCRYGG 1 cut(s) 336
BstEII GGTNACC 1 cut(s) 132
BstF5I GGATG 4 cut(s) 52, 277, 331, 351
BstKTI GATC 2 cut(s) 173, 331
BstMBI GATC 2 cut(s) 170, 328
BstNI CCWGG 1 cut(s) 44
BstPI GGTNACC 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 42
BstV1I GCAGC 1 cut(s) 372
BstX2I RGATCY 1 cut(s) 170
BstYI RGATCY 1 cut(s) 170
BtgI CCRYGG 1 cut(s) 336
BtsCI GGATG 4 cut(s) 52, 277, 331, 351
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 1 cut(s) 225
Cac8I GCNNGC 2 cut(s) 306, 365
CviAII CATG 3 cut(s) 19, 121, 337
CviJI RGCY 5 cut(s) 15, 33, 210, 237, 393
CviKI_1 RGCY 5 cut(s) 15, 33, 210, 237, 393
DpnI GATC 2 cut(s) 172, 330
DpnII GATC 2 cut(s) 170, 328
DraIII CACNNNGTG 1 cut(s) 22
Eco130I CCWWGG 1 cut(s) 336
Eco32I GATATC 1 cut(s) 199
Eco91I GGTNACC 1 cut(s) 132
EcoO65I GGTNACC 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 42
EcoRV GATATC 1 cut(s) 199
EcoT14I CCWWGG 1 cut(s) 336
ErhI CCWWGG 1 cut(s) 336
FaeI CATG 3 cut(s) 22, 124, 340
FaiI YATR 7 cut(s) 20, 77, 83, 122, 225, 268, 338
FatI CATG 3 cut(s) 18, 120, 336
FbaI TGATCA 1 cut(s) 328
Fnu4HI GCNGC 1 cut(s) 361
FokI GGATG 4 cut(s) 59, 264, 318, 338
Fsp4HI GCNGC 1 cut(s) 361
FspBI CTAG 1 cut(s) 147
GluI GCNGC 1 cut(s) 361
Hin1II CATG 3 cut(s) 22, 124, 340
HindIII AAGCTT 1 cut(s) 391
HphI GGTGA 1 cut(s) 340
Hpy188III TCNNGA 1 cut(s) 168
HpyAV CCTTC 2 cut(s) 65, 291
HpyCH4V TGCA 3 cut(s) 60, 218, 360
Hsp92II CATG 3 cut(s) 22, 124, 340
Ksp22I TGATCA 1 cut(s) 328
Kzo9I GATC 2 cut(s) 170, 328
LpnPI CCDG 7 cut(s) 29, 56, 119, 150, 165, 181, 251
Lsp1109I GCAGC 1 cut(s) 372
MaeI CTAG 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 132
MalI GATC 2 cut(s) 172, 330
MboI GATC 2 cut(s) 170, 328
MboII GAAGA 4 cut(s) 16, 253, 323, 326
MflI RGATCY 1 cut(s) 170
MhlI GDGCHC 1 cut(s) 369
MluCI AATT 2 cut(s) 51, 317
MmeI TCCRAC 1 cut(s) 208
MnlI CCTC 1 cut(s) 294
MseI TTAA 1 cut(s) 395
MspCI CTTAAG 1 cut(s) 394
MspR9I CCNGG 1 cut(s) 44
MvaI CCWGG 1 cut(s) 44
NcoI CCATGG 1 cut(s) 336
NdeII GATC 2 cut(s) 170, 328
NlaIII CATG 3 cut(s) 22, 124, 340
NlaIV GGNNCC 1 cut(s) 258
PflMI CCANNNNNTGG 1 cut(s) 22
PfoI TCCNGGA 1 cut(s) 42
PkrI GCNGC 1 cut(s) 362
Psp6I CCWGG 1 cut(s) 42
PspEI GGTNACC 1 cut(s) 132
PspGI CCWGG 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 258
PsuI RGATCY 1 cut(s) 170
SaqAI TTAA 1 cut(s) 395
SatI GCNGC 1 cut(s) 361
Sau3AI GATC 2 cut(s) 170, 328
ScrFI CCNGG 1 cut(s) 44
SduI GDGCHC 1 cut(s) 369
SetI ASST 3 cut(s) 108, 374, 395
SmlI CTYRAG 1 cut(s) 394
SmoI CTYRAG 1 cut(s) 394
SpeI ACTAGT 1 cut(s) 146
Sse9I AATT 2 cut(s) 51, 317
SsiI CCGC 1 cut(s) 342
SspMI CTAG 1 cut(s) 147
StyD4I CCNGG 1 cut(s) 42
StyI CCWWGG 1 cut(s) 336
TasI AATT 2 cut(s) 51, 317
Tru1I TTAA 1 cut(s) 395
Tru9I TTAA 1 cut(s) 395
TscAI CASTG 1 cut(s) 225
TseI GCWGC 1 cut(s) 360
TspDTI ATGAA 4 cut(s) 17, 63, 87, 273
TspRI CASTG 1 cut(s) 225
Van91I CCANNNNNTGG 1 cut(s) 22
Vha464I CTTAAG 1 cut(s) 394
XapI RAATTY 2 cut(s) 51, 317
XspI CTAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.