Rorug05G0302500

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000092
Physical Location & Seq
Forward (+)
35216411 .. 35219514
3104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0302500.1

Sequence Viewer

Length: 3030 bp
ATGGTTTGGTGGTTCTCATGGCTCTGTCTCCTCTTCTTCCTCTTTACTTCTCAATTGAACTGTTCATTATCATCTTCCAACTCTTCCTCTCCTCCTTCTTCAAGGCATGTGTGTAATTCTGATGAGAGTTCTGCTTTACTTCAATTCAAGAACTCATTTCATGTTAATCACTCTATGTACGATCTTTGGAAAATTGTCTTCTTTTCTCCCAAGACAGACTCATGGGCAAAAGATGAAGACTGTTGCAGATGGAATGGTGTCACATGTGAAAGGGTCACTGGTCACGTGAGCGGCCTCAACCTCAGTTTTGGTGGGCTTCAAGGAATACTTCACTCCAACAGCAGCTTATTCTCTCTTGGCCATCTCAAGATGCTAGACCTATCTTTCAATGATTTCATGGGTTCTTCCATTTCTTCCAAGTTTGGTGGATTTGTAAGTATGACACACCTCCACCTCTCTTTTTCCAACTTCACTGGTAAAATCCCTTCCGAAATCTCCCAGCTTTCCAAAATAGTTTCACTTGAGCTCTGTTCTGCTTCTGAAAAAACAACAATAGACACGCTTACCATGAAAGGAATTGCTCAGAACCTCACCAGCCTTAGAGTGCTTTCTCTCAGTTCTGTCAACATGTCTTCAGTTGTACCTGATTCCTTCCTGAATTTGTCTTCTTCTTTGACTTCACTTTCGCTCCAATTTTGCCACTTGCGTGGTAAGTTCCCAGAGACTTTATTCCACCTACCCAACCTTGAAGAACTTTCCTTGAGTGGAAACACTAATCTCACCGGATATACCCCCAAATCTAATTGGAGTAGTCCACTGAACTCCTTGGGTCTCTCTGAGACTAAAATCTCAATAGATCTGCATTTCTTGACAAGCAGTTTGAAATCTTTGAGGGGTTTGTATCTTCAGGAGTGCAATTTCACAGGATCGCGCTCGCATCTTGAATTGTCTGGTAACCTCACACAACTCATGTCATTGGATCTCGCTGGTAATAGTTTTGGTGGCCAGATACCATGGACGTCGCTTTTAAACCTTGAGCATCTCCAATTCTTGGATCTTTCAAGCAACATGTTTGTGGGTGAACTTCCAGAAATTCATGGTAATTCCACAAAAGCATCTTCAACTTTACTTGATTCTTCGAAGAAACAACTTGTTGGTGGTTCTATTCCTATGGGTTTGACCGTACTCTCTTTGTGGTACAACTCGCTTAGCGGAACAATACCATCTTGGGTATATTCTTTGCCATCTTTGGAATATTTGAACCTCGGTAACAACGAATTCACTGGTAATATCAATGATTTCCAGTCTCTTTCCTTGTCGCTTCTTGATTTAAGTAATAACAAGCTTCATGGCATGATTCCGAGTTCGATCTATGGACTTGTGAAACTTAGAGTTCTTTATATATCCTCAAACAATTTGAGTGGCGTTGTGAAGCTTGAAAAGTTCCAAACTCTCCAAAATCTCACCGATCTTGATCTTTCCTATAATCATCTAATGGTGAGTTTTCAGAACTTCAGTAATTTTACATTGCCTAAACTTTCATCACTGTTCATGTCTCGTTGCAAAATAACTCAGTTTCCGTACTTCCTGAGAACCTCAACCCAATTAACATCCCTAGATCTTTCCGACAACCAGATTCAAGGCAACGTTCCAACATGGGTGTTGGACGTGGGGAGAAATTCATTGTCATACTTCAATCTTTCCCACAATTTCTTGACGGGTACTATAGAACAATTTCTGTGGAATAACATAGTATATGTTGACCTTAGCTCCAATTTGTTGAAAGGAAAAGTTCCTATTCCATCACCTTCAACATACATCTTTTTCATGTCAAACAATCAATTGACTGGAACATTGCCATCCACCATTTGCAACCTGACTTCTGTCCAAGTAATTGATTTATCTAACAATAGCTTGAGTGGCAGGATTCCTCAATGTATAGGGAATTTCAGTCAAGATCTCTCAGTTTTGGATTTGCATATGAATCAATTTCGTGGCAGGATCCCTTCAACATTCCCAAAGGGAAACATCTTGAGGAATCTTGACCTTAATGGAAATCAGTTGGAAGGGACTCTGCCGCATTCTCTAGTCAATTGCACAAAGATGGAAGTTCTAGACTTGGGAGACAACAAGCTAAACGATACTTTCCCGAATTGGTTGGAGTCTCTTCCGGAGTTACAGGTTCTCATCTTGAGATCTAACAGACTGTATGGTCCAATTGGCAGTCCAGAGACAAGATTTCCCTTCAGAAAACTGCGAATCATTGACCTCTCCCACAATCAGTTTGGTGGCACTTTGCCAACAAAGTACTTTCAGAAATTGGTGGCTATGAAAGACGTGCAAGATGATGAACTGAAGTACATGGGAGAGTCCTATTACCAAGACACAGTCACAGTGGTAATGAAAGGCTTGTATCTTGAGCTGGTCAAAATACAAACCATGTTCACAACCATTGATTTTTCAAACAATGTTTTCACAGGAGAGATTCCGGGGGTGATCGGCGAACTCAAATCATTGAAGGGGCTTAACTTCTCTAGTAACAAGCTTACAGGTCCAATTCCATCCGCCTTCTGTAACTTGACTAATCTGGAATGGCTGGACATCTCCTCAAACATGCTTTCTGGTGAGATTCCAAGGCAACTAGCCGATTTGACGTCGCTTGCTAAGTTAAACCTATCAGGAAACCAGTTGGTTGGACCAATACCTAGTGGCAATCAGTTTGATACATTTGAAAATGATTCATACAGTGGAAATTTGGGGTTGTGTGGATATCCACTGTCTAAAACATGTATCAACGACGAAGCACCTCAACCACCAACGTTTGATCAGCAAGATGGTGATATGAATGGATTTGATTGGAAAATAGTATGGATGGGTTATGGATGTGGAATGGTAATTGGATTGTCTGTGGGATATATTGTTCTTTCCATTGCGAAAGTTGATCGGGGGGTAAGGGTCATGGGAAGAGAAATAAGGAGCAGAATGGCGAAAAGGGCCAAGAAGACTAGTGTTGGAACTAGAAAGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

1009

Amino Acids

111.99

Weight (kDa)

6.58

Isoelectric Point (pI)

33.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 40 - 89 1.1e-07 Leucine rich repeat N-terminal domain
LRR_8 PF13855 392 - 449 2.6e-09 Leucine rich repeat
LRR_8 PF13855 678 - 736 2.1e-09 Leucine rich repeat
LRR_8 PF13855 822 - 873 3.4e-07 Leucine rich repeat
LRR_8 PF13855 838 - 897 3.9e-09 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000092)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21210 AT2G21210 AT3G20220 AT4G34780 AT4G38840
fragaria_vesca FvH4_2g10810 FvH4_2g10820 FvH4_2g10850 FvH4_2g10870 FvH4_3g13730 FvH4_5g22620 FvH4_5g22660 FvH4_5g22690 FvH4_5g22700 FvH4_5g22780 FvH4_5g22790 FvH4_5g22810 FvH4_5g22821 FvH4_5g22822 FvH4_5g24600 FvH4_5g24720
malus_domestica MD05G1051600.v1.1 MD05G1051700.v1.1 MD05G1051800.v1.1 MD05G1052000.v1.1 MD05G1052100.v1.1 MD05G1052200.v1.1 MD05G1052300.v1.1 MD05G1052400.v1.1 MD05G1113300.v1.1 MD10G1059200.v1.1 MD10G1059500.v1.1 MD10G1059600.v1.1 MD10G1059700.v1.1 MD10G1059800.v1.1 MD10G1060100.v1.1 MD10G1060200.v1.1 MD10G1060300.v1.1 MD10G1060400.v1.1 MD10G1060500.v1.1 MD10G1060600.v1.1 MD10G1060700.v1.1 MD10G1060800.v1.1 MD10G1060900.v1.1 MD10G1061000.v1.1 MD10G1061100.v1.1
prunus_persica Prupe.8G078600_v2.0.a1 Prupe.8G078700_v2.0.a1 Prupe.8G078900_v2.0.a1 Prupe.8G079000_v2.0.a1 Prupe.8G079100_v2.0.a1 Prupe.8G079200_v2.0.a1 Prupe.8G079400_v2.0.a1 Prupe.8G079500_v2.0.a1 Prupe.8G079600_v2.0.a1 Prupe.8G079700_v2.0.a1 Prupe.8G079900_v2.0.a1 Prupe.8G080000_v2.0.a1 Prupe.8G080100_v2.0.a1 Prupe.8G080200_v2.0.a1 Prupe.8G080300_v2.0.a1 Prupe.8G080500_v2.0.a1 Prupe.8G080600_v2.0.a1 Prupe.8G080700_v2.0.a1 Prupe.8G080800_v2.0.a1 Prupe.8G081000_v2.0.a1 Prupe.8G081100_v2.0.a1 Prupe.8G081300_v2.0.a1 Prupe.8G081500_v2.0.a1 Prupe.8G081700_v2.0.a1 Prupe.8G157700_v2.0.a1
pyrus_communis pycom05g04350 pycom05g04390 pycom05g04400 pycom05g04410 pycom10g04550 pycom10g04560 pycom10g04570 pycom10g04580 pycom10g04590 pycom10g04600 pycom10g04610 pycom10g04630 pycom10g04640 pycom10g04650 pycom10g04660 pycom10g04680 pycom10g10040
rosa_chinensis RchiOBHm_Chr0c32g0501561 RchiOBHm_Chr2g0124401 RchiOBHm_Chr2g0124451 RchiOBHm_Chr2g0124461 RchiOBHm_Chr2g0124531 RchiOBHm_Chr2g0124561 RchiOBHm_Chr3g0483671 RchiOBHm_Chr3g0483711 RchiOBHm_Chr5g0056801 RchiOBHm_Chr5g0056821 RchiOBHm_Chr5g0056831 RchiOBHm_Chr5g0056841 RchiOBHm_Chr5g0059921 RchiOBHm_Chr6g0268901 RchiOBHm_Chr6g0268941 RchiOBHm_Chr6g0268951 RchiOBHm_Chr6g0268961 RchiOBHm_Chr7g0210461 RchiOBHm_Chr7g0210481 RchiOBHm_Chr7g0210491 RchiOBHm_Chr7g0210511 RchiOBHm_Chr7g0210531 RchiOBHm_Chr7g0210621 RchiOBHm_Chr7g0210641 RchiOBHm_Chr7g0210651 RchiOBHm_Chr7g0210661 RchiOBHm_Chr7g0210711 RchiOBHm_Chr7g0210801 RchiOBHm_Chr7g0210831 RchiOBHm_Chr7g0210851 RchiOBHm_Chr7g0210871 RchiOBHm_Chr7g0210881 RchiOBHm_Chr7g0210891 RchiOBHm_Chr7g0211121 RchiOBHm_Chr7g0211131 RchiOBHm_Chr7g0211151 RchiOBHm_Chr7g0211501 RchiOBHm_Chr7g0211511
rosa_laevigata RLG00000003016 RLG00000003020 RLG00000003021 RLG00000003031 RLG00000003032 RLG00000003033 RLG00000003034 RLG00000003040 RLG00000003041 RLG00000018801 RLG00000035128 RLG00000035129
rosa_multiflora Rmu_co8425977.1_g000001 Rmu_sc0001081.1_g000010 Rmu_sc0001081.1_g000011 Rmu_sc0001303.1_g000001 Rmu_sc0001303.1_g000002 Rmu_sc0001303.1_g000004 Rmu_sc0001303.1_g000007 Rmu_sc0001460.1_g000030 Rmu_sc0001460.1_g000035 Rmu_sc0001460.1_g000041 Rmu_sc0001460.1_g000048 Rmu_sc0002755.1_g000005 Rmu_sc0002755.1_g000011 Rmu_sc0002755.1_g000017 Rmu_sc0002755.1_g000027 Rmu_sc0003765.1_g000020 Rmu_sc0003765.1_g000042 Rmu_sc0003765.1_g000043 Rmu_sc0003765.1_g000048 Rmu_sc0003765.1_g000057 Rmu_sc0003765.1_g000058 Rmu_sc0003807.1_g000013 Rmu_sc0003807.1_g000014 Rmu_sc0003807.1_g000015 Rmu_sc0003807.1_g000018 Rmu_sc0003907.1_g000001 Rmu_sc0005302.1_g000002 Rmu_sc0005302.1_g000003 Rmu_sc0005696.1_g000001 Rmu_sc0005844.1_g000001 Rmu_sc0005844.1_g000002 Rmu_sc0005844.1_g000003 Rmu_sc0008289.1_g000006 Rmu_sc0008289.1_g000008 Rmu_sc0008289.1_g000009 Rmu_sc0008289.1_g000014 Rmu_sc0010535.1_g000012 Rmu_sc0010535.1_g000013 Rmu_sc0010535.1_g000014 Rmu_sc0010535.1_g000015 Rmu_sc0011084.1_g000001 Rmu_sc0011691.1_g000001 Rmu_sc0017239.1_g000001 Rmu_sc0018437.1_g000009 Rmu_sc0018662.1_g000001 Rmu_sc0018662.1_g000003 Rmu_sc0020409.1_g000001 Rmu_sc0024576.1_g000001 Rmu_sc0034951.1_g000001
rosa_roxburghii Rroxscaffold_1G00023480 Rroxscaffold_1G00023490 Rroxscaffold_1G00023570 Rroxscaffold_2G00119860 Rroxscaffold_2G00119910 Rroxscaffold_3G00247990 Rroxscaffold_3G00248000 Rroxscaffold_3G00248010 Rroxscaffold_3G00248060 Rroxscaffold_3G00248070 Rroxscaffold_3G00248090 Rroxscaffold_3G00248100 Rroxscaffold_3G00248210 Rroxscaffold_3G00248230 Rroxscaffold_3G00248240 Rroxscaffold_3G00248270 Rroxscaffold_3G00248290
rosa_rugosa Rorug02G0251000.1 Rorug02G0251100 Rorug02G0251100 Rorug02G0251200 Rorug02G0251300 Rorug05G0302000 Rorug05G0302100 Rorug05G0302400 Rorug05G0302500 Rorug06G0043500 Rorug06G0043600 Rorug06G0043600 Rorug07G0121600 Rorug07G0121700 Rorug07G0121800 Rorug07G0121900 Rorug07G0122300 Rorug07G0122400 Rorug07G0122500 Rorug07G0122600 Rorug07G0122700 Rorug07G0122700 Rorug07G0123100 Rorug07G0123200 Rorug07G0123300 Rorug07G0123600 Rorug07G0123700 Rorug07G0124200 Rorug07G0124300 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124600 Rorug07G0124700
rosa_wichuraiana Rw0G021160 Rw0G021170 Rw2G024970 Rw2G024980 Rw2G025000 Rw2G025020 Rw2G025030 Rw2G025040 Rw2G025050 Rw3G023170 Rw3G023180 Rw5G034930 Rw5G034940 Rw5G034960 Rw5G035050 Rw5G035060 Rw5G035070 Rw6G014100 Rw6G014110 Rw6G014130 Rw6G014140 Rw6G014150 Rw7G021690 Rw7G021700 Rw7G021710 Rw7G021720 Rw7G021740 Rw7G021750 Rw7G021760 Rw7G021770 Rw7G021790 Rw7G021800 Rw7G021810 Rw7G021820 Rw7G021900 Rw7G021910 Rw7G021920 Rw7G021930 Rw7G021940 Rw7G021950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2211
AatII GACGTC 2 cut(s) 1022, 2657
AccB7I CCANNNNNTGG 1 cut(s) 1051
AccBSI CCGCTC 1 cut(s) 291
AccII CGCG 1 cut(s) 931
AccIII TCCGGA 1 cut(s) 2170
AciI CCGC 4 cut(s) 291, 1212, 2078, 2565
AclI AACGTT 2 cut(s) 1647, 2819
AclWI GGATC 5 cut(s) 934, 987, 1062, 1996, 2009
AcoI YGGCCR 2 cut(s) 358, 1003
AcsI RAATTY 6 cut(s) 658, 1092, 1277, 1678, 1945, 2752
AcuI CTGAAG 5 cut(s) 618, 890, 1498, 2230, 2375
AcvI CACGTG 1 cut(s) 286
AcyI GRCGYC 2 cut(s) 1019, 2654
AfaI GTAC 8 cut(s) 179, 642, 1185, 1199, 1583, 1723, 2309, 2360
AfiI CCNNNNNNNGG 1 cut(s) 1051
AflIII ACRYGT 4 cut(s) 263, 627, 1068, 2786
AhlI ACTAGT 1 cut(s) 3005
AjiI CACGTC 2 cut(s) 1669, 2338
AleI CACNNNNGTG 1 cut(s) 705
AloI GAACNNNNNNTCC 2 cut(s) 2904, 2936
Alw21I GWGCWC 1 cut(s) 528
Alw26I GTCTC 9 cut(s) 32, 716, 833, 836, 1311, 1560, 2118, 2169, 2225
AlwI GGATC 5 cut(s) 934, 987, 1062, 1996, 2009
Aor13HI TCCGGA 1 cut(s) 2170
AoxI GGCC 4 cut(s) 292, 358, 1003, 2994
ApeKI GCWGC 1 cut(s) 342
ApoI RAATTY 6 cut(s) 658, 1092, 1277, 1678, 1945, 2752
ArsI GACNNNNNNTTYG 4 cut(s) 667, 699, 862, 894
Asp700I GAANNNNTTC 1 cut(s) 1734
AspLEI GCGC 1 cut(s) 933
AspS9I GGNCC 4 cut(s) 2213, 2552, 2696, 2994
AsuC2I CCSGG 1 cut(s) 2490
AsuHPI GGTGA 9 cut(s) 583, 772, 1091, 1456, 1510, 1797, 2506, 2636, 2849
AsuII TTCGAA 1 cut(s) 1139
AvaII GGWCC 3 cut(s) 2213, 2552, 2696
BalI TGGCCA 2 cut(s) 360, 1005
BamHI GGATCC 1 cut(s) 2001
BanII GRGCYC 1 cut(s) 528
BarI GAAGNNNNNNTAC 2 cut(s) 469, 501
BbrPI CACGTG 1 cut(s) 286
BbsI GAAGAC 5 cut(s) 190, 243, 624, 657, 3008
Bbv12I GWGCWC 1 cut(s) 528
BbvI GCAGC 1 cut(s) 354
BclI TGATCA 1 cut(s) 2824
BcnI CCSGG 1 cut(s) 2490
BcoDI GTCTC 9 cut(s) 32, 716, 833, 836, 1311, 1560, 2118, 2169, 2225
BcuI ACTAGT 1 cut(s) 3005
BfaI CTAG 9 cut(s) 374, 1616, 2087, 2114, 2535, 2642, 2706, 3006, 3018
BfmI CTRYAG 1 cut(s) 1725
BglII AGATCT 4 cut(s) 856, 1618, 1957, 2195
BisI GCNGC 3 cut(s) 292, 343, 2078
BlpI GCTNAGC 1 cut(s) 1208
BlsI GCNGC 3 cut(s) 293, 344, 2079
BmcAI AGTACT 1 cut(s) 2309
Bme1390I CCNGG 1 cut(s) 2490
Bme18I GGWCC 3 cut(s) 2213, 2552, 2696
BmgBI CACGTC 2 cut(s) 1669, 2338
BmgT120I GGNCC 4 cut(s) 2213, 2552, 2696, 2994
BmiI GGNNCC 1 cut(s) 2003
BmrFI CCNGG 1 cut(s) 2490
BmsI GCATC 4 cut(s) 360, 946, 1048, 1124
BoxI GACNNNNGTC 1 cut(s) 1883
BpiI GAAGAC 5 cut(s) 190, 243, 624, 657, 3008
Bpu10I CCTNAGC 1 cut(s) 1766
Bpu1102I GCTNAGC 1 cut(s) 1208
Bpu14I TTCGAA 1 cut(s) 1139
BpuEI CTTGAG 8 cut(s) 350, 542, 781, 1055, 1936, 2053, 2212, 2438
BpuMI CCSGG 1 cut(s) 2490
BsaAI YACGTR 1 cut(s) 286
BsaBI GATNNNNATC 1 cut(s) 1473
BsaHI GRCGYC 2 cut(s) 1019, 2654
BsaI GGTCTC 1 cut(s) 836
BsaJI CCNNGG 5 cut(s) 825, 1013, 1264, 2489, 2633
BsaWI WCCGGW 2 cut(s) 782, 2170
BsaXI ACNNNNNCTCC 4 cut(s) 672, 702, 1754, 1784
Bsc4I CCNNNNNNNGG 1 cut(s) 1051
Bse1I ACTGG 6 cut(s) 283, 478, 1288, 1303, 1852, 2686
Bse3DI GCAATG 3 cut(s) 1526, 1853, 2928
Bse8I GATNNNNATC 1 cut(s) 1473
BseAI TCCGGA 1 cut(s) 2170
BseDI CCNNGG 5 cut(s) 825, 1013, 1264, 2489, 2633
BseGI GGATG 5 cut(s) 1610, 1859, 2561, 2877, 2888
BseJI GATNNNNATC 1 cut(s) 1473
BseLI CCNNNNNNNGG 1 cut(s) 1051
BseMI GCAATG 3 cut(s) 1526, 1853, 2928
BseMII CTCAG 7 cut(s) 316, 596, 628, 828, 1580, 1586, 1977
BseNI ACTGG 6 cut(s) 283, 478, 1288, 1303, 1852, 2686
BseRI GAGGAG 3 cut(s) 20, 81, 2596
BseXI GCAGC 1 cut(s) 354
BseYI CCCAGC 1 cut(s) 498
Bsh1236I CGCG 1 cut(s) 931
BshFI GGCC 4 cut(s) 294, 360, 1005, 2996
BsiHKAI GWGCWC 1 cut(s) 528
BsiSI CCGG 3 cut(s) 783, 2171, 2489
BslFI GGGAC 1 cut(s) 2083
BslI CCNNNNNNNGG 1 cut(s) 1051
BsmAI GTCTC 9 cut(s) 32, 716, 833, 836, 1311, 1560, 2118, 2169, 2225
BsmFI GGGAC 1 cut(s) 2083
BsmI GAATGC 1 cut(s) 2080
BsnI GGCC 4 cut(s) 294, 360, 1005, 2996
Bso31I GGTCTC 1 cut(s) 836
Bsp119I TTCGAA 1 cut(s) 1139
Bsp1286I GDGCHC 1 cut(s) 528
Bsp13I TCCGGA 1 cut(s) 2170
Bsp1720I GCTNAGC 1 cut(s) 1208
Bsp19I CCATGG 1 cut(s) 1013
BspACI CCGC 4 cut(s) 291, 1212, 2078, 2565
BspANI GGCC 4 cut(s) 294, 360, 1005, 2996
BspCNI CTCAG 7 cut(s) 315, 595, 627, 829, 1581, 1585, 1976
BspEI TCCGGA 1 cut(s) 2170
BspFNI CGCG 1 cut(s) 931
BspLI GGNNCC 1 cut(s) 2003
BspPI GGATC 5 cut(s) 934, 987, 1062, 1996, 2009
BspT104I TTCGAA 1 cut(s) 1139
BspTNI GGTCTC 1 cut(s) 836
BsrBI CCGCTC 1 cut(s) 291
BsrDI GCAATG 3 cut(s) 1526, 1853, 2928
BsrI ACTGG 6 cut(s) 283, 478, 1288, 1303, 1852, 2686
BssECI CCNNGG 5 cut(s) 825, 1013, 1264, 2489, 2633
BssNI GRCGYC 2 cut(s) 1019, 2654
BssT1I CCWWGG 3 cut(s) 825, 1013, 2633
Bst4CI ACNGT 9 cut(s) 62, 242, 1183, 1548, 2208, 2389, 2395, 2747, 2778
Bst6I CTCTTC 4 cut(s) 38, 88, 2172, 2959
BstACI GRCGYC 2 cut(s) 1019, 2654
BstBAI YACGTR 1 cut(s) 286
BstBI TTCGAA 1 cut(s) 1139
BstC8I GCNNGC 2 cut(s) 935, 2661
BstDSI CCRYGG 1 cut(s) 1013
BstEII GGTNACC 1 cut(s) 953
BstF5I GGATG 5 cut(s) 1610, 1859, 2561, 2877, 2888
BstFNI CGCG 1 cut(s) 931
BstHHI GCGC 1 cut(s) 933
BstMAI GTCTC 9 cut(s) 32, 716, 833, 836, 1311, 1560, 2118, 2169, 2225
BstMWI GCNNNNNNNGC 2 cut(s) 1920, 2993
BstNSI RCATGY 6 cut(s) 110, 267, 631, 1072, 2617, 2790
BstPAI GACNNNNGTC 1 cut(s) 1883
BstPI GGTNACC 1 cut(s) 953
BstSCI CCNGG 1 cut(s) 2488
BstSFI CTRYAG 1 cut(s) 1725
BstUI CGCG 1 cut(s) 931
BstV1I GCAGC 1 cut(s) 354
BstV2I GAAGAC 5 cut(s) 190, 243, 624, 657, 3008
BstX2I RGATCY 7 cut(s) 856, 979, 1054, 1618, 1957, 2001, 2195
BstXI CCANNNNNNTGG 2 cut(s) 707, 2693
BstYI RGATCY 7 cut(s) 856, 979, 1054, 1618, 1957, 2001, 2195
BsuRI GGCC 4 cut(s) 294, 360, 1005, 2996
BtgI CCRYGG 1 cut(s) 1013
BtrI CACGTC 2 cut(s) 1669, 2338
BtsCI GGATG 5 cut(s) 1610, 1859, 2561, 2877, 2888
BtsIMutI CAGTG 8 cut(s) 276, 471, 815, 1281, 1544, 2400, 2752, 2774
Cac8I GCNNGC 2 cut(s) 935, 2661
CfoI GCGC 1 cut(s) 933
Cfr13I GGNCC 4 cut(s) 2213, 2552, 2696, 2994
Csp6I GTAC 8 cut(s) 178, 641, 1184, 1198, 1582, 1722, 2308, 2359
CspCI CAANNNNNGTGG 6 cut(s) 406, 441, 1402, 1437, 1721, 1756
CviQI GTAC 8 cut(s) 178, 641, 1184, 1198, 1582, 1722, 2308, 2359
DraI TTTAAA 1 cut(s) 1029
DrdI GACNNNNNNGTC 1 cut(s) 2211
DseDI GACNNNNNNGTC 1 cut(s) 2211
EaeI YGGCCR 2 cut(s) 358, 1003
Eam1104I CTCTTC 4 cut(s) 38, 88, 2172, 2959
EarI CTCTTC 4 cut(s) 38, 88, 2172, 2959
EciI GGCGGA 1 cut(s) 2554
Ecl136II GAGCTC 1 cut(s) 526
Eco130I CCWWGG 3 cut(s) 825, 1013, 2633
Eco24I GRGCYC 1 cut(s) 528
Eco31I GGTCTC 1 cut(s) 836
Eco32I GATATC 1 cut(s) 2771
Eco47I GGWCC 3 cut(s) 2213, 2552, 2696
Eco53kI GAGCTC 1 cut(s) 526
Eco57I CTGAAG 5 cut(s) 618, 890, 1498, 2230, 2375
Eco72I CACGTG 1 cut(s) 286
Eco91I GGTNACC 1 cut(s) 953
EcoICRI GAGCTC 1 cut(s) 526
EcoO65I GGTNACC 1 cut(s) 953
EcoRI GAATTC 1 cut(s) 1277
EcoRV GATATC 1 cut(s) 2771
EcoT14I CCWWGG 3 cut(s) 825, 1013, 2633
EcoT38I GRGCYC 1 cut(s) 528
ErhI CCWWGG 3 cut(s) 825, 1013, 2633
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FaqI GGGAC 1 cut(s) 2083
FauNDI CATATG 1 cut(s) 1980
FbaI TGATCA 1 cut(s) 2824
Fnu4HI GCNGC 3 cut(s) 292, 343, 2078
FokI GGATG 5 cut(s) 1597, 1846, 2548, 2884, 2895
FriOI GRGCYC 1 cut(s) 528
Fsp4HI GCNGC 3 cut(s) 292, 343, 2078
FspBI CTAG 9 cut(s) 374, 1616, 2087, 2114, 2535, 2642, 2706, 3006, 3018
GlaI GCGC 1 cut(s) 932
GluI GCNGC 3 cut(s) 292, 343, 2078
GsaI CCCAGC 1 cut(s) 502
HaeIII GGCC 4 cut(s) 294, 360, 1005, 2996
HapII CCGG 3 cut(s) 783, 2171, 2489
HhaI GCGC 1 cut(s) 933
Hin1I GRCGYC 2 cut(s) 1019, 2654
Hin6I GCGC 1 cut(s) 931
HinP1I GCGC 1 cut(s) 931
HincII GTYRAC 2 cut(s) 625, 1762
HindII GTYRAC 2 cut(s) 625, 1762
HindIII AAGCTT 3 cut(s) 1343, 1433, 2543
HpaII CCGG 3 cut(s) 783, 2171, 2489
HphI GGTGA 9 cut(s) 583, 772, 1091, 1456, 1510, 1797, 2506, 2636, 2849
Hpy166II GTNNAC 5 cut(s) 625, 815, 1082, 1762, 2445
Hpy8I GTNNAC 5 cut(s) 625, 815, 1082, 1762, 2445
Hpy99I CGWCG 3 cut(s) 1024, 2659, 2801
HpyAV CCTTC 9 cut(s) 105, 495, 661, 1818, 2016, 2060, 2254, 2512, 2578
HpyCH4III ACNGT 9 cut(s) 62, 242, 1183, 1548, 2208, 2389, 2395, 2747, 2778
HpyCH4IV ACGT 7 cut(s) 285, 1019, 1647, 1668, 2337, 2654, 2819
HpyCH4V TGCA 8 cut(s) 246, 862, 915, 1563, 1872, 1978, 2097, 2341
HpyF10VI GCNNNNNNNGC 2 cut(s) 1920, 2993
HpySE526I ACGT 7 cut(s) 285, 1019, 1647, 1668, 2337, 2654, 2819
Hsp92I GRCGYC 2 cut(s) 1019, 2654
HspAI GCGC 1 cut(s) 931
Kpn2I TCCGGA 1 cut(s) 2170
Ksp22I TGATCA 1 cut(s) 2824
LmnI GCTCC 3 cut(s) 693, 1775, 2976
Lsp1109I GCAGC 1 cut(s) 354
LweI GCATC 4 cut(s) 360, 946, 1048, 1124
MaeI CTAG 9 cut(s) 374, 1616, 2087, 2114, 2535, 2642, 2706, 3006, 3018
MaeII ACGT 7 cut(s) 285, 1019, 1647, 1668, 2337, 2654, 2819
MaeIII GTNAC 9 cut(s) 259, 274, 281, 953, 1268, 2175, 2389, 2537, 2573
MbiI CCGCTC 1 cut(s) 291
MfeI CAATTG 4 cut(s) 53, 1841, 2092, 2217
MflI RGATCY 7 cut(s) 856, 979, 1054, 1618, 1957, 2001, 2195
MhlI GDGCHC 1 cut(s) 528
MlsI TGGCCA 2 cut(s) 360, 1005
MluNI TGGCCA 2 cut(s) 360, 1005
MlyI GAGTC 4 cut(s) 212, 2065, 2171, 2378
Mox20I TGGCCA 2 cut(s) 360, 1005
MroI TCCGGA 1 cut(s) 2170
MroXI GAANNNNTTC 1 cut(s) 1734
MscI TGGCCA 2 cut(s) 360, 1005
MseI TTAA 7 cut(s) 165, 1028, 1331, 1607, 2049, 2526, 2669
MslI CAYNNNNRTG 3 cut(s) 705, 1073, 2102
Msp20I TGGCCA 2 cut(s) 360, 1005
MspI CCGG 3 cut(s) 783, 2171, 2489
MspR9I CCNGG 1 cut(s) 2490
MunI CAATTG 4 cut(s) 53, 1841, 2092, 2217
Mva1269I GAATGC 1 cut(s) 2080
MvnI CGCG 1 cut(s) 931
MwoI GCNNNNNNNGC 2 cut(s) 1920, 2993
NciI CCSGG 1 cut(s) 2490
NcoI CCATGG 1 cut(s) 1013
NdeI CATATG 1 cut(s) 1980
NlaIV GGNNCC 1 cut(s) 2003
NmuCI GTSAC 4 cut(s) 259, 274, 281, 2389
NspI RCATGY 6 cut(s) 110, 267, 631, 1072, 2617, 2790
NspV TTCGAA 1 cut(s) 1139
OliI CACNNNNGTG 1 cut(s) 705
PciI ACATGT 4 cut(s) 263, 627, 1068, 2786
PcsI WCGNNNNNNNCGW 1 cut(s) 1272
PctI GAATGC 1 cut(s) 2080
PdmI GAANNNNTTC 1 cut(s) 1734
PflFI GACNNNGTC 1 cut(s) 2387
PflMI CCANNNNNTGG 1 cut(s) 1051
PkrI GCNGC 3 cut(s) 293, 344, 2079
PleI GAGTC 4 cut(s) 212, 2065, 2170, 2377
PmaCI CACGTG 1 cut(s) 286
PmlI CACGTG 1 cut(s) 286
PpsI GAGTC 4 cut(s) 212, 2065, 2170, 2377
Ppu21I YACGTR 1 cut(s) 286
PscI ACATGT 4 cut(s) 263, 627, 1068, 2786
PshAI GACNNNNGTC 1 cut(s) 1883
Psp124BI GAGCTC 1 cut(s) 528
Psp1406I AACGTT 2 cut(s) 1647, 2819
PspCI CACGTG 1 cut(s) 286
PspEI GGTNACC 1 cut(s) 953
PspFI CCCAGC 1 cut(s) 498
PspN4I GGNNCC 1 cut(s) 2003
PspPI GGNCC 4 cut(s) 2213, 2552, 2696, 2994
PsuI RGATCY 7 cut(s) 856, 979, 1054, 1618, 1957, 2001, 2195
PsyI GACNNNGTC 1 cut(s) 2387
RsaI GTAC 8 cut(s) 179, 642, 1185, 1199, 1583, 1723, 2309, 2360
RsaNI GTAC 8 cut(s) 178, 641, 1184, 1198, 1582, 1722, 2308, 2359
RseI CAYNNNNRTG 3 cut(s) 705, 1073, 2102
SacI GAGCTC 1 cut(s) 528
SaqAI TTAA 7 cut(s) 165, 1028, 1331, 1607, 2049, 2526, 2669
SatI GCNGC 3 cut(s) 292, 343, 2078
Sau96I GGNCC 4 cut(s) 2213, 2552, 2696, 2994
ScaI AGTACT 1 cut(s) 2309
SchI GAGTC 4 cut(s) 212, 2065, 2171, 2378
ScrFI CCNGG 1 cut(s) 2490
SduI GDGCHC 1 cut(s) 528
SfaNI GCATC 4 cut(s) 360, 946, 1048, 1124
SfcI CTRYAG 1 cut(s) 1725
SfuI TTCGAA 1 cut(s) 1139
SinI GGWCC 3 cut(s) 2213, 2552, 2696
SmiMI CAYNNNNRTG 3 cut(s) 705, 1073, 2102
SmlI CTYRAG 8 cut(s) 365, 521, 760, 1034, 1915, 2032, 2191, 2417
SmoI CTYRAG 8 cut(s) 365, 521, 760, 1034, 1915, 2032, 2191, 2417
SpeI ACTAGT 1 cut(s) 3005
SsiI CCGC 4 cut(s) 291, 1212, 2078, 2565
SspI AATATT 1 cut(s) 1256
SspMI CTAG 9 cut(s) 374, 1616, 2087, 2114, 2535, 2642, 2706, 3006, 3018
SstI GAGCTC 1 cut(s) 528
StyD4I CCNGG 1 cut(s) 2488
StyI CCWWGG 3 cut(s) 825, 1013, 2633
TaaI ACNGT 9 cut(s) 62, 242, 1183, 1548, 2208, 2389, 2395, 2747, 2778
TaiI ACGT 7 cut(s) 288, 1022, 1650, 1671, 2340, 2657, 2822
TaqI TCGA 2 cut(s) 1139, 1367
TatI WGTACW 2 cut(s) 2307, 2358
TauI GCSGC 2 cut(s) 294, 2080
Tru1I TTAA 7 cut(s) 165, 1028, 1331, 1607, 2049, 2526, 2669
Tru9I TTAA 7 cut(s) 165, 1028, 1331, 1607, 2049, 2526, 2669
TscAI CASTG 8 cut(s) 283, 478, 822, 1288, 1551, 2400, 2752, 2781
TseFI GTSAC 4 cut(s) 259, 274, 281, 2389
TseI GCWGC 1 cut(s) 342
Tsp45I GTSAC 4 cut(s) 259, 274, 281, 2389
TspGWI ACGGA 1 cut(s) 1569
TspRI CASTG 8 cut(s) 283, 478, 822, 1288, 1551, 2400, 2752, 2781
Tth111I GACNNNGTC 1 cut(s) 2387
Van91I CCANNNNNTGG 1 cut(s) 1051
VpaK11BI GGWCC 3 cut(s) 2213, 2552, 2696
XapI RAATTY 6 cut(s) 658, 1092, 1277, 1678, 1945, 2752
XbaI TCTAGA 1 cut(s) 2113
XceI RCATGY 6 cut(s) 110, 267, 631, 1072, 2617, 2790
XcmI CCANNNNNNNNNTGG 1 cut(s) 2282
XmnI GAANNNNTTC 1 cut(s) 1734
XspI CTAG 9 cut(s) 374, 1616, 2087, 2114, 2535, 2642, 2706, 3006, 3018
ZraI GACGTC 2 cut(s) 1020, 2655
ZrmI AGTACT 1 cut(s) 2309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.