Rroxscaffold_3G00248210

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000092
Physical Location & Seq
Forward (+)
41501054 .. 41504343
3290 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00248210.1

Sequence Viewer

Length: 465 bp
ATGGTTGAACATGGGGGTGGTGATGAAGAAGGGGGTACCGATGAGGATCGCAGCTCGTGGGCGATGAACATTGATGGCTGCAAGCACACGCCACTGTCGCCTATTCTCTCCCACCCACAATCTAGATCCGACCGGGATTTTGATGTTATGGCCACTTTCCAGTCCGGCCCAAAGACCACCACCTCTGCCTATGTCCTCCCGTGGATACAGAAACCATGGGTCCGATTACCTCGAATTGCTAACACAAAGACATCAGATATCCCAAAAGGCTACTTTGCAGTCTATGTTGGAGAGAGCCAGAAGAAACGATTTGTGGTTCCAATATCATACTTGAACCAACCTTTGTTTCTCGATTTGCTGAGTCAAGCTGAAGAAGAATTTGGATACAATCACCCAGTGGGTGGTATCACAATTCCTTGCAGTGAAGACGCCTTCCTTGATCTCACTTCCCACCTAAGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

154

Amino Acids

17.11

Weight (kDa)

5.1

Isoelectric Point (pI)

46.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 80 - 151 5.1e-23 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000092)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21210 AT2G21210 AT3G20220 AT4G34780 AT4G38840
fragaria_vesca FvH4_2g10810 FvH4_2g10820 FvH4_2g10850 FvH4_2g10870 FvH4_3g13730 FvH4_5g22620 FvH4_5g22660 FvH4_5g22690 FvH4_5g22700 FvH4_5g22780 FvH4_5g22790 FvH4_5g22810 FvH4_5g22821 FvH4_5g22822 FvH4_5g24600 FvH4_5g24720
malus_domestica MD05G1051600.v1.1 MD05G1051700.v1.1 MD05G1051800.v1.1 MD05G1052000.v1.1 MD05G1052100.v1.1 MD05G1052200.v1.1 MD05G1052300.v1.1 MD05G1052400.v1.1 MD05G1113300.v1.1 MD10G1059200.v1.1 MD10G1059500.v1.1 MD10G1059600.v1.1 MD10G1059700.v1.1 MD10G1059800.v1.1 MD10G1060100.v1.1 MD10G1060200.v1.1 MD10G1060300.v1.1 MD10G1060400.v1.1 MD10G1060500.v1.1 MD10G1060600.v1.1 MD10G1060700.v1.1 MD10G1060800.v1.1 MD10G1060900.v1.1 MD10G1061000.v1.1 MD10G1061100.v1.1
prunus_persica Prupe.8G078600_v2.0.a1 Prupe.8G078700_v2.0.a1 Prupe.8G078900_v2.0.a1 Prupe.8G079000_v2.0.a1 Prupe.8G079100_v2.0.a1 Prupe.8G079200_v2.0.a1 Prupe.8G079400_v2.0.a1 Prupe.8G079500_v2.0.a1 Prupe.8G079600_v2.0.a1 Prupe.8G079700_v2.0.a1 Prupe.8G079900_v2.0.a1 Prupe.8G080000_v2.0.a1 Prupe.8G080100_v2.0.a1 Prupe.8G080200_v2.0.a1 Prupe.8G080300_v2.0.a1 Prupe.8G080500_v2.0.a1 Prupe.8G080600_v2.0.a1 Prupe.8G080700_v2.0.a1 Prupe.8G080800_v2.0.a1 Prupe.8G081000_v2.0.a1 Prupe.8G081100_v2.0.a1 Prupe.8G081300_v2.0.a1 Prupe.8G081500_v2.0.a1 Prupe.8G081700_v2.0.a1 Prupe.8G157700_v2.0.a1
pyrus_communis pycom05g04350 pycom05g04390 pycom05g04400 pycom05g04410 pycom10g04550 pycom10g04560 pycom10g04570 pycom10g04580 pycom10g04590 pycom10g04600 pycom10g04610 pycom10g04630 pycom10g04640 pycom10g04650 pycom10g04660 pycom10g04680 pycom10g10040
rosa_chinensis RchiOBHm_Chr0c32g0501561 RchiOBHm_Chr2g0124401 RchiOBHm_Chr2g0124451 RchiOBHm_Chr2g0124461 RchiOBHm_Chr2g0124531 RchiOBHm_Chr2g0124561 RchiOBHm_Chr3g0483671 RchiOBHm_Chr3g0483711 RchiOBHm_Chr5g0056801 RchiOBHm_Chr5g0056821 RchiOBHm_Chr5g0056831 RchiOBHm_Chr5g0056841 RchiOBHm_Chr5g0059921 RchiOBHm_Chr6g0268901 RchiOBHm_Chr6g0268941 RchiOBHm_Chr6g0268951 RchiOBHm_Chr6g0268961 RchiOBHm_Chr7g0210461 RchiOBHm_Chr7g0210481 RchiOBHm_Chr7g0210491 RchiOBHm_Chr7g0210511 RchiOBHm_Chr7g0210531 RchiOBHm_Chr7g0210621 RchiOBHm_Chr7g0210641 RchiOBHm_Chr7g0210651 RchiOBHm_Chr7g0210661 RchiOBHm_Chr7g0210711 RchiOBHm_Chr7g0210801 RchiOBHm_Chr7g0210831 RchiOBHm_Chr7g0210851 RchiOBHm_Chr7g0210871 RchiOBHm_Chr7g0210881 RchiOBHm_Chr7g0210891 RchiOBHm_Chr7g0211121 RchiOBHm_Chr7g0211131 RchiOBHm_Chr7g0211151 RchiOBHm_Chr7g0211501 RchiOBHm_Chr7g0211511
rosa_laevigata RLG00000003016 RLG00000003020 RLG00000003021 RLG00000003031 RLG00000003032 RLG00000003033 RLG00000003034 RLG00000003040 RLG00000003041 RLG00000018801 RLG00000035128 RLG00000035129
rosa_multiflora Rmu_co8425977.1_g000001 Rmu_sc0001081.1_g000010 Rmu_sc0001081.1_g000011 Rmu_sc0001303.1_g000001 Rmu_sc0001303.1_g000002 Rmu_sc0001303.1_g000004 Rmu_sc0001303.1_g000007 Rmu_sc0001460.1_g000030 Rmu_sc0001460.1_g000035 Rmu_sc0001460.1_g000041 Rmu_sc0001460.1_g000048 Rmu_sc0002755.1_g000005 Rmu_sc0002755.1_g000011 Rmu_sc0002755.1_g000017 Rmu_sc0002755.1_g000027 Rmu_sc0003765.1_g000020 Rmu_sc0003765.1_g000042 Rmu_sc0003765.1_g000043 Rmu_sc0003765.1_g000048 Rmu_sc0003765.1_g000057 Rmu_sc0003765.1_g000058 Rmu_sc0003807.1_g000013 Rmu_sc0003807.1_g000014 Rmu_sc0003807.1_g000015 Rmu_sc0003807.1_g000018 Rmu_sc0003907.1_g000001 Rmu_sc0005302.1_g000002 Rmu_sc0005302.1_g000003 Rmu_sc0005696.1_g000001 Rmu_sc0005844.1_g000001 Rmu_sc0005844.1_g000002 Rmu_sc0005844.1_g000003 Rmu_sc0008289.1_g000006 Rmu_sc0008289.1_g000008 Rmu_sc0008289.1_g000009 Rmu_sc0008289.1_g000014 Rmu_sc0010535.1_g000012 Rmu_sc0010535.1_g000013 Rmu_sc0010535.1_g000014 Rmu_sc0010535.1_g000015 Rmu_sc0011084.1_g000001 Rmu_sc0011691.1_g000001 Rmu_sc0017239.1_g000001 Rmu_sc0018437.1_g000009 Rmu_sc0018662.1_g000001 Rmu_sc0018662.1_g000003 Rmu_sc0020409.1_g000001 Rmu_sc0024576.1_g000001 Rmu_sc0034951.1_g000001
rosa_roxburghii Rroxscaffold_1G00023480 Rroxscaffold_1G00023490 Rroxscaffold_1G00023570 Rroxscaffold_2G00119860 Rroxscaffold_2G00119910 Rroxscaffold_3G00247990 Rroxscaffold_3G00248000 Rroxscaffold_3G00248010 Rroxscaffold_3G00248060 Rroxscaffold_3G00248070 Rroxscaffold_3G00248090 Rroxscaffold_3G00248100 Rroxscaffold_3G00248210 Rroxscaffold_3G00248230 Rroxscaffold_3G00248240 Rroxscaffold_3G00248270 Rroxscaffold_3G00248290
rosa_rugosa Rorug02G0251000.1 Rorug02G0251100 Rorug02G0251100 Rorug02G0251200 Rorug02G0251300 Rorug05G0302000 Rorug05G0302100 Rorug05G0302400 Rorug05G0302500 Rorug06G0043500 Rorug06G0043600 Rorug06G0043600 Rorug07G0121600 Rorug07G0121700 Rorug07G0121800 Rorug07G0121900 Rorug07G0122300 Rorug07G0122400 Rorug07G0122500 Rorug07G0122600 Rorug07G0122700 Rorug07G0122700 Rorug07G0123100 Rorug07G0123200 Rorug07G0123300 Rorug07G0123600 Rorug07G0123700 Rorug07G0124200 Rorug07G0124300 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124600 Rorug07G0124700
rosa_wichuraiana Rw0G021160 Rw0G021170 Rw2G024970 Rw2G024980 Rw2G025000 Rw2G025020 Rw2G025030 Rw2G025040 Rw2G025050 Rw3G023170 Rw3G023180 Rw5G034930 Rw5G034940 Rw5G034960 Rw5G035050 Rw5G035060 Rw5G035070 Rw6G014100 Rw6G014110 Rw6G014130 Rw6G014140 Rw6G014150 Rw7G021690 Rw7G021700 Rw7G021710 Rw7G021720 Rw7G021740 Rw7G021750 Rw7G021760 Rw7G021770 Rw7G021790 Rw7G021800 Rw7G021810 Rw7G021820 Rw7G021900 Rw7G021910 Rw7G021920 Rw7G021930 Rw7G021940 Rw7G021950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 35
AccB1I GGYRCC 1 cut(s) 35
AccB7I CCANNNNNTGG 1 cut(s) 401
AclWI GGATC 2 cut(s) 54, 120
AcoI YGGCCR 1 cut(s) 150
AcsI RAATTY 1 cut(s) 377
AcuI CTGAAG 1 cut(s) 390
AcyI GRCGYC 1 cut(s) 429
AdeI CACNNNGTG 1 cut(s) 397
AfaI GTAC 1 cut(s) 37
AfiI CCNNNNNNNGG 1 cut(s) 401
AgsI TTSAA 2 cut(s) 8, 334
AjuI GAANNNNNNNTTGG 4 cut(s) 330, 362, 363, 395
AleI CACNNNNGTG 1 cut(s) 456
AluBI AGCT 2 cut(s) 54, 368
AluI AGCT 2 cut(s) 54, 368
AlwI GGATC 2 cut(s) 54, 120
AoxI GGCC 2 cut(s) 150, 166
ApeKI GCWGC 2 cut(s) 51, 78
ApoI RAATTY 1 cut(s) 377
ArsI GACNNNNNNTTYG 2 cut(s) 122, 154
Asp718I GGTACC 1 cut(s) 35
AspS9I GGNCC 2 cut(s) 167, 220
AsuC2I CCSGG 1 cut(s) 134
AsuHPI GGTGA 2 cut(s) 32, 383
AvaII GGWCC 1 cut(s) 220
BalI TGGCCA 1 cut(s) 152
BanI GGYRCC 1 cut(s) 35
BauI CACGAG 1 cut(s) 55
BbsI GAAGAC 1 cut(s) 432
BbvI GCAGC 2 cut(s) 63, 65
BccI CCATC 1 cut(s) 68
BciVI GTATCC 2 cut(s) 198, 377
BcnI CCSGG 1 cut(s) 134
BfaI CTAG 1 cut(s) 123
BfuI GTATCC 2 cut(s) 198, 377
BisI GCNGC 2 cut(s) 52, 79
BlsI GCNGC 2 cut(s) 53, 80
Bme1390I CCNGG 1 cut(s) 134
Bme18I GGWCC 1 cut(s) 220
BmgT120I GGNCC 2 cut(s) 167, 220
BmiI GGNNCC 3 cut(s) 37, 221, 318
BmrFI CCNGG 1 cut(s) 134
BmrI ACTGGG 1 cut(s) 389
BmuI ACTGGG 1 cut(s) 389
BpiI GAAGAC 1 cut(s) 432
BpuMI CCSGG 1 cut(s) 134
BsaBI GATNNNNATC 1 cut(s) 45
BsaHI GRCGYC 1 cut(s) 429
BsaJI CCNNGG 2 cut(s) 200, 215
Bsc4I CCNNNNNNNGG 1 cut(s) 401
Bse1I ACTGG 2 cut(s) 160, 395
Bse8I GATNNNNATC 1 cut(s) 45
BseDI CCNNGG 2 cut(s) 200, 215
BseJI GATNNNNATC 1 cut(s) 45
BseLI CCNNNNNNNGG 1 cut(s) 401
BseMII CTCAG 1 cut(s) 350
BseNI ACTGG 2 cut(s) 160, 395
BseXI GCAGC 2 cut(s) 63, 65
Bsh1285I CGRYCG 1 cut(s) 133
BshFI GGCC 2 cut(s) 152, 168
BshNI GGYRCC 1 cut(s) 35
BsiEI CGRYCG 1 cut(s) 133
BsiSI CCGG 2 cut(s) 133, 165
BslI CCNNNNNNNGG 1 cut(s) 401
BsnI GGCC 2 cut(s) 152, 168
Bsp143I GATC 3 cut(s) 46, 125, 439
Bsp19I CCATGG 1 cut(s) 215
BspANI GGCC 2 cut(s) 152, 168
BspCNI CTCAG 1 cut(s) 351
BspLI GGNNCC 3 cut(s) 37, 221, 318
BspPI GGATC 2 cut(s) 54, 120
BspT107I GGYRCC 1 cut(s) 35
BsrI ACTGG 2 cut(s) 160, 395
BssECI CCNNGG 2 cut(s) 200, 215
BssMI GATC 3 cut(s) 46, 125, 439
BssNI GRCGYC 1 cut(s) 429
BssSI CACGAG 1 cut(s) 55
BssT1I CCWWGG 1 cut(s) 215
Bst2BI CACGAG 1 cut(s) 55
Bst4CI ACNGT 1 cut(s) 96
BstACI GRCGYC 1 cut(s) 429
BstC8I GCNNGC 1 cut(s) 83
BstDEI CTNAG 2 cut(s) 359, 455
BstDSI CCRYGG 2 cut(s) 200, 215
BstKTI GATC 3 cut(s) 49, 128, 442
BstMBI GATC 3 cut(s) 46, 125, 439
BstMCI CGRYCG 1 cut(s) 133
BstMWI GCNNNNNNNGC 1 cut(s) 97
BstSCI CCNGG 1 cut(s) 132
BstV1I GCAGC 2 cut(s) 63, 65
BstV2I GAAGAC 1 cut(s) 432
BstX2I RGATCY 1 cut(s) 125
BstYI RGATCY 1 cut(s) 125
BsuI GTATCC 2 cut(s) 198, 377
BsuRI GGCC 2 cut(s) 152, 168
BtgI CCRYGG 2 cut(s) 200, 215
BtgZI GCGATG 1 cut(s) 77
BtsI GCAGTG 1 cut(s) 427
BtsIMutI CAGTG 3 cut(s) 92, 402, 427
Cac8I GCNNGC 1 cut(s) 83
Cfr13I GGNCC 2 cut(s) 167, 220
CseI GACGC 1 cut(s) 437
Csp6I GTAC 1 cut(s) 36
CviAII CATG 2 cut(s) 11, 216
CviJI RGCY 7 cut(s) 54, 78, 152, 168, 270, 297, 368
CviKI_1 RGCY 7 cut(s) 54, 78, 152, 168, 270, 297, 368
CviQI GTAC 1 cut(s) 36
DdeI CTNAG 2 cut(s) 359, 455
DpnI GATC 3 cut(s) 48, 127, 441
DpnII GATC 3 cut(s) 46, 125, 439
DraIII CACNNNGTG 1 cut(s) 397
EaeI YGGCCR 1 cut(s) 150
Eco130I CCWWGG 1 cut(s) 215
Eco32I GATATC 1 cut(s) 259
Eco47I GGWCC 1 cut(s) 220
Eco57I CTGAAG 1 cut(s) 390
EcoRV GATATC 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 215
ErhI CCWWGG 1 cut(s) 215
FaeI CATG 2 cut(s) 14, 219
FaiI YATR 6 cut(s) 12, 149, 192, 217, 285, 328
FatI CATG 2 cut(s) 10, 215
Fnu4HI GCNGC 2 cut(s) 52, 79
Fsp4HI GCNGC 2 cut(s) 52, 79
FspBI CTAG 1 cut(s) 123
GluI GCNGC 2 cut(s) 52, 79
HaeIII GGCC 2 cut(s) 152, 168
HapII CCGG 2 cut(s) 133, 165
HgaI GACGC 1 cut(s) 437
Hin1I GRCGYC 1 cut(s) 429
Hin1II CATG 2 cut(s) 14, 219
HinfI GANTC 1 cut(s) 361
HpaII CCGG 2 cut(s) 133, 165
HphI GGTGA 2 cut(s) 32, 383
Hpy188I TCNGA 3 cut(s) 130, 224, 256
Hpy188III TCNNGA 2 cut(s) 123, 350
HpyAV CCTTC 2 cut(s) 23, 442
HpyCH4III ACNGT 1 cut(s) 96
HpyCH4V TGCA 3 cut(s) 81, 278, 420
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
HpyF3I CTNAG 2 cut(s) 359, 455
Hsp92I GRCGYC 1 cut(s) 429
Hsp92II CATG 2 cut(s) 14, 219
KpnI GGTACC 1 cut(s) 39
Kzo9I GATC 3 cut(s) 46, 125, 439
LpnPI CCDG 5 cut(s) 146, 173, 178, 311, 408
Lsp1109I GCAGC 2 cut(s) 63, 65
MaeI CTAG 1 cut(s) 123
MalI GATC 3 cut(s) 48, 127, 441
MboI GATC 3 cut(s) 46, 125, 439
MboII GAAGA 5 cut(s) 38, 313, 383, 386, 437
MflI RGATCY 1 cut(s) 125
MlsI TGGCCA 1 cut(s) 152
MluCI AATT 3 cut(s) 234, 377, 411
MluNI TGGCCA 1 cut(s) 152
MlyI GAGTC 1 cut(s) 370
MmeI TCCRAC 2 cut(s) 153, 268
MnlI CCTC 4 cut(s) 37, 193, 206, 240
Mox20I TGGCCA 1 cut(s) 152
MscI TGGCCA 1 cut(s) 152
MslI CAYNNNNRTG 2 cut(s) 15, 456
Msp20I TGGCCA 1 cut(s) 152
MspI CCGG 2 cut(s) 133, 165
MspR9I CCNGG 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 97
NciI CCSGG 1 cut(s) 134
NcoI CCATGG 1 cut(s) 215
NdeII GATC 3 cut(s) 46, 125, 439
NlaIII CATG 2 cut(s) 14, 219
NlaIV GGNNCC 3 cut(s) 37, 221, 318
OliI CACNNNNGTG 1 cut(s) 456
PflMI CCANNNNNTGG 1 cut(s) 401
PkrI GCNGC 2 cut(s) 53, 80
PleI GAGTC 1 cut(s) 369
PpsI GAGTC 1 cut(s) 369
PspN4I GGNNCC 3 cut(s) 37, 221, 318
PspPI GGNCC 2 cut(s) 167, 220
PsuI RGATCY 1 cut(s) 125
RsaI GTAC 1 cut(s) 37
RsaNI GTAC 1 cut(s) 36
RseI CAYNNNNRTG 2 cut(s) 15, 456
SatI GCNGC 2 cut(s) 52, 79
Sau3AI GATC 3 cut(s) 46, 125, 439
Sau96I GGNCC 2 cut(s) 167, 220
SchI GAGTC 1 cut(s) 370
ScrFI CCNGG 1 cut(s) 134
SetI ASST 6 cut(s) 56, 185, 232, 343, 370, 456
SinI GGWCC 1 cut(s) 220
SmiMI CAYNNNNRTG 2 cut(s) 15, 456
Sse9I AATT 3 cut(s) 234, 377, 411
SspMI CTAG 1 cut(s) 123
StyD4I CCNGG 1 cut(s) 132
StyI CCWWGG 1 cut(s) 215
TaaI ACNGT 1 cut(s) 96
TaqI TCGA 2 cut(s) 232, 351
TasI AATT 3 cut(s) 234, 377, 411
TscAI CASTG 3 cut(s) 99, 402, 427
TseI GCWGC 2 cut(s) 51, 78
TspDTI ATGAA 2 cut(s) 39, 80
TspRI CASTG 3 cut(s) 99, 402, 427
Van91I CCANNNNNTGG 1 cut(s) 401
VpaK11BI GGWCC 1 cut(s) 220
XapI RAATTY 1 cut(s) 377
XbaI TCTAGA 1 cut(s) 122
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.