Rorug07G0121600

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000092
Physical Location & Seq
Forward (+)
9489077 .. 9489895
819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0121600.1

Sequence Viewer

Length: 609 bp
ATGCGAGGTTTCAGGGAGGCCTTAGGGTTTAGTTCACTCCATGACTTGCATTTCTCTGGCCCATGCTTTACATGGAAGGGTATTCGACACGGTAGGGATGTGAGAGTCAGACTGGATAGGTTTGTAGCCCAAGACGAGTGGCGTCATCTGTTCCTAAAGTCGAGGGTTATTCATGTCAATCCAAATGAATCCAATCATCTTCCTATTATCTTGGAGGTAAGGAGGAAACGAATGAGGAAAATGAGGAGGAAAAAACCGTTTCTGTTTGAGGAATACTGGTTGCGAGAAAAAGATTGTAGAGAGGTGGTTGAAGCAGGTTGGGAGAGTGCAACTGGGACTTGTCCACTTGAGAGAGTCCAGAATAGAATCTTGAACACACATGAGGCTCTCATCTCTTGGAGCCATTCTTTCATCAAGCTGCAAAACAGGAGGAAAAAGAATCTCATTAAGGGGCTACACAATGATGGGGGAGTATGGAGGTCTGAGGAGGAGAAGATTGAATCGGTGGTTTTGGGGTACTATAGGGATTTATTTCAGAGTTCCAATCCACAGCAGATCCATGAGGTTACTGAGCTCCTTCCGAAACTTATCACTGATGAGATGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

202

Amino Acids

24.16

Weight (kDa)

9.6

Isoelectric Point (pI)

45.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000092)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21210 AT2G21210 AT3G20220 AT4G34780 AT4G38840
fragaria_vesca FvH4_2g10810 FvH4_2g10820 FvH4_2g10850 FvH4_2g10870 FvH4_3g13730 FvH4_5g22620 FvH4_5g22660 FvH4_5g22690 FvH4_5g22700 FvH4_5g22780 FvH4_5g22790 FvH4_5g22810 FvH4_5g22821 FvH4_5g22822 FvH4_5g24600 FvH4_5g24720
malus_domestica MD05G1051600.v1.1 MD05G1051700.v1.1 MD05G1051800.v1.1 MD05G1052000.v1.1 MD05G1052100.v1.1 MD05G1052200.v1.1 MD05G1052300.v1.1 MD05G1052400.v1.1 MD05G1113300.v1.1 MD10G1059200.v1.1 MD10G1059500.v1.1 MD10G1059600.v1.1 MD10G1059700.v1.1 MD10G1059800.v1.1 MD10G1060100.v1.1 MD10G1060200.v1.1 MD10G1060300.v1.1 MD10G1060400.v1.1 MD10G1060500.v1.1 MD10G1060600.v1.1 MD10G1060700.v1.1 MD10G1060800.v1.1 MD10G1060900.v1.1 MD10G1061000.v1.1 MD10G1061100.v1.1
prunus_persica Prupe.8G078600_v2.0.a1 Prupe.8G078700_v2.0.a1 Prupe.8G078900_v2.0.a1 Prupe.8G079000_v2.0.a1 Prupe.8G079100_v2.0.a1 Prupe.8G079200_v2.0.a1 Prupe.8G079400_v2.0.a1 Prupe.8G079500_v2.0.a1 Prupe.8G079600_v2.0.a1 Prupe.8G079700_v2.0.a1 Prupe.8G079900_v2.0.a1 Prupe.8G080000_v2.0.a1 Prupe.8G080100_v2.0.a1 Prupe.8G080200_v2.0.a1 Prupe.8G080300_v2.0.a1 Prupe.8G080500_v2.0.a1 Prupe.8G080600_v2.0.a1 Prupe.8G080700_v2.0.a1 Prupe.8G080800_v2.0.a1 Prupe.8G081000_v2.0.a1 Prupe.8G081100_v2.0.a1 Prupe.8G081300_v2.0.a1 Prupe.8G081500_v2.0.a1 Prupe.8G081700_v2.0.a1 Prupe.8G157700_v2.0.a1
pyrus_communis pycom05g04350 pycom05g04390 pycom05g04400 pycom05g04410 pycom10g04550 pycom10g04560 pycom10g04570 pycom10g04580 pycom10g04590 pycom10g04600 pycom10g04610 pycom10g04630 pycom10g04640 pycom10g04650 pycom10g04660 pycom10g04680 pycom10g10040
rosa_chinensis RchiOBHm_Chr0c32g0501561 RchiOBHm_Chr2g0124401 RchiOBHm_Chr2g0124451 RchiOBHm_Chr2g0124461 RchiOBHm_Chr2g0124531 RchiOBHm_Chr2g0124561 RchiOBHm_Chr3g0483671 RchiOBHm_Chr3g0483711 RchiOBHm_Chr5g0056801 RchiOBHm_Chr5g0056821 RchiOBHm_Chr5g0056831 RchiOBHm_Chr5g0056841 RchiOBHm_Chr5g0059921 RchiOBHm_Chr6g0268901 RchiOBHm_Chr6g0268941 RchiOBHm_Chr6g0268951 RchiOBHm_Chr6g0268961 RchiOBHm_Chr7g0210461 RchiOBHm_Chr7g0210481 RchiOBHm_Chr7g0210491 RchiOBHm_Chr7g0210511 RchiOBHm_Chr7g0210531 RchiOBHm_Chr7g0210621 RchiOBHm_Chr7g0210641 RchiOBHm_Chr7g0210651 RchiOBHm_Chr7g0210661 RchiOBHm_Chr7g0210711 RchiOBHm_Chr7g0210801 RchiOBHm_Chr7g0210831 RchiOBHm_Chr7g0210851 RchiOBHm_Chr7g0210871 RchiOBHm_Chr7g0210881 RchiOBHm_Chr7g0210891 RchiOBHm_Chr7g0211121 RchiOBHm_Chr7g0211131 RchiOBHm_Chr7g0211151 RchiOBHm_Chr7g0211501 RchiOBHm_Chr7g0211511
rosa_laevigata RLG00000003016 RLG00000003020 RLG00000003021 RLG00000003031 RLG00000003032 RLG00000003033 RLG00000003034 RLG00000003040 RLG00000003041 RLG00000018801 RLG00000035128 RLG00000035129
rosa_multiflora Rmu_co8425977.1_g000001 Rmu_sc0001081.1_g000010 Rmu_sc0001081.1_g000011 Rmu_sc0001303.1_g000001 Rmu_sc0001303.1_g000002 Rmu_sc0001303.1_g000004 Rmu_sc0001303.1_g000007 Rmu_sc0001460.1_g000030 Rmu_sc0001460.1_g000035 Rmu_sc0001460.1_g000041 Rmu_sc0001460.1_g000048 Rmu_sc0002755.1_g000005 Rmu_sc0002755.1_g000011 Rmu_sc0002755.1_g000017 Rmu_sc0002755.1_g000027 Rmu_sc0003765.1_g000020 Rmu_sc0003765.1_g000042 Rmu_sc0003765.1_g000043 Rmu_sc0003765.1_g000048 Rmu_sc0003765.1_g000057 Rmu_sc0003765.1_g000058 Rmu_sc0003807.1_g000013 Rmu_sc0003807.1_g000014 Rmu_sc0003807.1_g000015 Rmu_sc0003807.1_g000018 Rmu_sc0003907.1_g000001 Rmu_sc0005302.1_g000002 Rmu_sc0005302.1_g000003 Rmu_sc0005696.1_g000001 Rmu_sc0005844.1_g000001 Rmu_sc0005844.1_g000002 Rmu_sc0005844.1_g000003 Rmu_sc0008289.1_g000006 Rmu_sc0008289.1_g000008 Rmu_sc0008289.1_g000009 Rmu_sc0008289.1_g000014 Rmu_sc0010535.1_g000012 Rmu_sc0010535.1_g000013 Rmu_sc0010535.1_g000014 Rmu_sc0010535.1_g000015 Rmu_sc0011084.1_g000001 Rmu_sc0011691.1_g000001 Rmu_sc0017239.1_g000001 Rmu_sc0018437.1_g000009 Rmu_sc0018662.1_g000001 Rmu_sc0018662.1_g000003 Rmu_sc0020409.1_g000001 Rmu_sc0024576.1_g000001 Rmu_sc0034951.1_g000001
rosa_roxburghii Rroxscaffold_1G00023480 Rroxscaffold_1G00023490 Rroxscaffold_1G00023570 Rroxscaffold_2G00119860 Rroxscaffold_2G00119910 Rroxscaffold_3G00247990 Rroxscaffold_3G00248000 Rroxscaffold_3G00248010 Rroxscaffold_3G00248060 Rroxscaffold_3G00248070 Rroxscaffold_3G00248090 Rroxscaffold_3G00248100 Rroxscaffold_3G00248210 Rroxscaffold_3G00248230 Rroxscaffold_3G00248240 Rroxscaffold_3G00248270 Rroxscaffold_3G00248290
rosa_rugosa Rorug02G0251000.1 Rorug02G0251100 Rorug02G0251100 Rorug02G0251200 Rorug02G0251300 Rorug05G0302000 Rorug05G0302100 Rorug05G0302400 Rorug05G0302500 Rorug06G0043500 Rorug06G0043600 Rorug06G0043600 Rorug07G0121600 Rorug07G0121700 Rorug07G0121800 Rorug07G0121900 Rorug07G0122300 Rorug07G0122400 Rorug07G0122500 Rorug07G0122600 Rorug07G0122700 Rorug07G0122700 Rorug07G0123100 Rorug07G0123200 Rorug07G0123300 Rorug07G0123600 Rorug07G0123700 Rorug07G0124200 Rorug07G0124300 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124600 Rorug07G0124700
rosa_wichuraiana Rw0G021160 Rw0G021170 Rw2G024970 Rw2G024980 Rw2G025000 Rw2G025020 Rw2G025030 Rw2G025040 Rw2G025050 Rw3G023170 Rw3G023180 Rw5G034930 Rw5G034940 Rw5G034960 Rw5G035050 Rw5G035060 Rw5G035070 Rw6G014100 Rw6G014110 Rw6G014130 Rw6G014140 Rw6G014150 Rw7G021690 Rw7G021700 Rw7G021710 Rw7G021720 Rw7G021740 Rw7G021750 Rw7G021760 Rw7G021770 Rw7G021790 Rw7G021800 Rw7G021810 Rw7G021820 Rw7G021900 Rw7G021910 Rw7G021920 Rw7G021930 Rw7G021940 Rw7G021950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 305
AclWI GGATC 1 cut(s) 550
AcyI GRCGYC 1 cut(s) 142
AfaI GTAC 1 cut(s) 518
AgsI TTSAA 3 cut(s) 311, 373, 500
AluBI AGCT 2 cut(s) 418, 574
AluI AGCT 2 cut(s) 418, 574
Alw21I GWGCWC 1 cut(s) 576
AlwI GGATC 1 cut(s) 550
AoxI GGCC 2 cut(s) 18, 58
ApeKI GCWGC 1 cut(s) 418
AspS9I GGNCC 1 cut(s) 59
AxyI CCTNAGG 1 cut(s) 22
BanII GRGCYC 1 cut(s) 576
Bbv12I GWGCWC 1 cut(s) 576
BbvI GCAGC 1 cut(s) 405
BccI CCATC 2 cut(s) 458, 595
BfaI CTAG 1 cut(s) 607
BfmI CTRYAG 1 cut(s) 520
BfuAI ACCTGC 1 cut(s) 305
BisI GCNGC 1 cut(s) 419
BlsI GCNGC 1 cut(s) 420
BmgT120I GGNCC 1 cut(s) 59
BmiI GGNNCC 1 cut(s) 401
BmrI ACTGGG 1 cut(s) 342
BmuI ACTGGG 1 cut(s) 342
BpuEI CTTGAG 1 cut(s) 368
BsaHI GRCGYC 1 cut(s) 142
Bse1I ACTGG 3 cut(s) 117, 281, 337
Bse21I CCTNAGG 1 cut(s) 22
BseGI GGATG 1 cut(s) 103
BseMII CTCAG 2 cut(s) 474, 561
BseNI ACTGG 3 cut(s) 117, 281, 337
BseRI GAGGAG 3 cut(s) 259, 500, 503
BseXI GCAGC 1 cut(s) 405
BshFI GGCC 2 cut(s) 20, 60
BsiHKAI GWGCWC 1 cut(s) 576
BslFI GGGAC 1 cut(s) 349
BsmFI GGGAC 1 cut(s) 349
BsnI GGCC 2 cut(s) 20, 60
Bsp1286I GDGCHC 1 cut(s) 576
Bsp143I GATC 1 cut(s) 555
BspANI GGCC 2 cut(s) 20, 60
BspCNI CTCAG 2 cut(s) 475, 562
BspLI GGNNCC 1 cut(s) 401
BspMI ACCTGC 1 cut(s) 305
BspPI GGATC 1 cut(s) 550
BsrI ACTGG 3 cut(s) 117, 281, 337
BssMI GATC 1 cut(s) 555
BssNI GRCGYC 1 cut(s) 142
Bst4CI ACNGT 2 cut(s) 92, 258
BstACI GRCGYC 1 cut(s) 142
BstDEI CTNAG 3 cut(s) 22, 483, 570
BstF5I GGATG 1 cut(s) 103
BstKTI GATC 1 cut(s) 558
BstMBI GATC 1 cut(s) 555
BstSFI CTRYAG 1 cut(s) 520
BstV1I GCAGC 1 cut(s) 405
BstX2I RGATCY 1 cut(s) 555
BstYI RGATCY 1 cut(s) 555
Bsu36I CCTNAGG 1 cut(s) 22
BsuRI GGCC 2 cut(s) 20, 60
BtsCI GGATG 1 cut(s) 103
BtsIMutI CAGTG 1 cut(s) 591
BveI ACCTGC 1 cut(s) 305
Cfr13I GGNCC 1 cut(s) 59
CseI GACGC 1 cut(s) 131
Csp6I GTAC 1 cut(s) 517
CspCI CAANNNNNGTGG 2 cut(s) 119, 154
CviAII CATG 6 cut(s) 41, 63, 72, 173, 380, 560
CviJI RGCY 8 cut(s) 20, 60, 128, 386, 402, 418, 454, 574
CviKI_1 RGCY 8 cut(s) 20, 60, 128, 386, 402, 418, 454, 574
CviQI GTAC 1 cut(s) 517
DdeI CTNAG 3 cut(s) 22, 483, 570
DpnI GATC 1 cut(s) 557
DpnII GATC 1 cut(s) 555
Ecl136II GAGCTC 1 cut(s) 574
Eco147I AGGCCT 1 cut(s) 20
Eco24I GRGCYC 1 cut(s) 576
Eco53kI GAGCTC 1 cut(s) 574
Eco81I CCTNAGG 1 cut(s) 22
EcoICRI GAGCTC 1 cut(s) 574
EcoT38I GRGCYC 1 cut(s) 576
FaeI CATG 6 cut(s) 44, 66, 75, 176, 383, 563
FaiI YATR 8 cut(s) 42, 64, 73, 174, 381, 475, 522, 561
FaqI GGGAC 1 cut(s) 349
FatI CATG 6 cut(s) 40, 62, 71, 172, 379, 559
Fnu4HI GCNGC 1 cut(s) 419
FokI GGATG 1 cut(s) 110
FriOI GRGCYC 1 cut(s) 576
Fsp4HI GCNGC 1 cut(s) 419
FspBI CTAG 1 cut(s) 607
GluI GCNGC 1 cut(s) 419
HaeIII GGCC 2 cut(s) 20, 60
HgaI GACGC 1 cut(s) 131
Hin1I GRCGYC 1 cut(s) 142
Hin1II CATG 6 cut(s) 44, 66, 75, 176, 383, 563
HinfI GANTC 6 cut(s) 105, 188, 354, 366, 439, 500
Hpy166II GTNNAC 2 cut(s) 35, 344
Hpy188I TCNGA 4 cut(s) 110, 484, 537, 582
Hpy188III TCNNGA 2 cut(s) 358, 370
Hpy8I GTNNAC 2 cut(s) 35, 344
HpyAV CCTTC 2 cut(s) 70, 587
HpyCH4III ACNGT 2 cut(s) 92, 258
HpyCH4V TGCA 3 cut(s) 49, 329, 421
HpyF3I CTNAG 3 cut(s) 22, 483, 570
Hsp92I GRCGYC 1 cut(s) 142
Hsp92II CATG 6 cut(s) 44, 66, 75, 176, 383, 563
Kzo9I GATC 1 cut(s) 555
LmnI GCTCC 2 cut(s) 399, 579
LpnPI CCDG 7 cut(s) 42, 98, 262, 300, 318, 371, 412
Lsp1109I GCAGC 1 cut(s) 405
MaeI CTAG 1 cut(s) 607
MaeIII GTNAC 1 cut(s) 565
MalI GATC 1 cut(s) 557
MboI GATC 1 cut(s) 555
MboII GAAGA 2 cut(s) 191, 505
MflI RGATCY 1 cut(s) 555
MhlI GDGCHC 1 cut(s) 576
MlyI GAGTC 2 cut(s) 114, 363
MseI TTAA 1 cut(s) 447
MslI CAYNNNNRTG 1 cut(s) 462
NdeII GATC 1 cut(s) 555
NlaIII CATG 6 cut(s) 44, 66, 75, 176, 383, 563
NlaIV GGNNCC 1 cut(s) 401
PceI AGGCCT 1 cut(s) 20
PfeI GAWTC 4 cut(s) 188, 366, 439, 500
PkrI GCNGC 1 cut(s) 420
PleI GAGTC 2 cut(s) 113, 362
PpsI GAGTC 2 cut(s) 113, 362
Psp124BI GAGCTC 1 cut(s) 576
PspN4I GGNNCC 1 cut(s) 401
PspPI GGNCC 1 cut(s) 59
PsuI RGATCY 1 cut(s) 555
RsaI GTAC 1 cut(s) 518
RsaNI GTAC 1 cut(s) 517
RseI CAYNNNNRTG 1 cut(s) 462
SacI GAGCTC 1 cut(s) 576
SaqAI TTAA 1 cut(s) 447
SatI GCNGC 1 cut(s) 419
Sau3AI GATC 1 cut(s) 555
Sau96I GGNCC 1 cut(s) 59
SchI GAGTC 2 cut(s) 114, 363
SduI GDGCHC 1 cut(s) 576
SetI ASST 9 cut(s) 10, 122, 219, 306, 319, 420, 482, 567, 576
SfcI CTRYAG 1 cut(s) 520
SmiMI CAYNNNNRTG 1 cut(s) 462
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
SseBI AGGCCT 1 cut(s) 20
SspMI CTAG 1 cut(s) 607
SstI GAGCTC 1 cut(s) 576
StuI AGGCCT 1 cut(s) 20
TaaI ACNGT 2 cut(s) 92, 258
TaqI TCGA 2 cut(s) 85, 161
TfiI GAWTC 4 cut(s) 188, 366, 439, 500
Tru1I TTAA 1 cut(s) 447
Tru9I TTAA 1 cut(s) 447
TscAI CASTG 1 cut(s) 598
TseI GCWGC 1 cut(s) 418
TspDTI ATGAA 3 cut(s) 161, 201, 400
TspRI CASTG 1 cut(s) 598
XcmI CCANNNNNNNNNTGG 1 cut(s) 69
XspI CTAG 1 cut(s) 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.