Rroxscaffold_3G00247990

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000092
Physical Location & Seq
Forward (+)
41313052 .. 41318521
5470 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00247990.1

Sequence Viewer

Length: 555 bp
ATGGGTTTCCAATTGCCACGAATCGCTAGCACAAAGACATCAGCTATCCCGAAAGGCTGCTTTGCAGTCTATGTTGGAAAGAACCAGAAGAAACGATTTGTGGTTCCATTATCATATTTGAACCAACCTTTGTTTCAGGATTTGCTGAGTCAAGCTGAAGAAGAATTTGGATACCATCATCCAATGGGCGCTTCCTATCTTTCCCAGATCCTTTCAACTCTTTTTATTGTTTATACACTTGGGAATATAGAAGCCATGGGTTTCCGGCTGCCTGTAATTCTTAGCTCCAAGAGAAGTCTTACCCAATCTTCATCCAATGTGAACAAGACAGCTTCAAAGACCTTAGATATCCCAAAAGGCTACTTTGCGGTCTATGTTGGAGAGAGTCAGAAGAAGCGATTTTTGATTCCAATATCGTACTTGAACCAACCTTCATTTATGGTTTTGCTGAGTCAAGCTGAAGAAGAATTTGGATATGATCATCCCATGGGTGGTATCACAATCCCCTGCAGTGAAGACACCTTCCTTGATCTCACTTCCCGCTTAAGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

184

Amino Acids

20.52

Weight (kDa)

8.81

Isoelectric Point (pI)

45.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 10 - 62 6.9e-18 Auxin responsive protein
Auxin_inducible PF02519 98 - 181 4e-23 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000092)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21210 AT2G21210 AT3G20220 AT4G34780 AT4G38840
fragaria_vesca FvH4_2g10810 FvH4_2g10820 FvH4_2g10850 FvH4_2g10870 FvH4_3g13730 FvH4_5g22620 FvH4_5g22660 FvH4_5g22690 FvH4_5g22700 FvH4_5g22780 FvH4_5g22790 FvH4_5g22810 FvH4_5g22821 FvH4_5g22822 FvH4_5g24600 FvH4_5g24720
malus_domestica MD05G1051600.v1.1 MD05G1051700.v1.1 MD05G1051800.v1.1 MD05G1052000.v1.1 MD05G1052100.v1.1 MD05G1052200.v1.1 MD05G1052300.v1.1 MD05G1052400.v1.1 MD05G1113300.v1.1 MD10G1059200.v1.1 MD10G1059500.v1.1 MD10G1059600.v1.1 MD10G1059700.v1.1 MD10G1059800.v1.1 MD10G1060100.v1.1 MD10G1060200.v1.1 MD10G1060300.v1.1 MD10G1060400.v1.1 MD10G1060500.v1.1 MD10G1060600.v1.1 MD10G1060700.v1.1 MD10G1060800.v1.1 MD10G1060900.v1.1 MD10G1061000.v1.1 MD10G1061100.v1.1
prunus_persica Prupe.8G078600_v2.0.a1 Prupe.8G078700_v2.0.a1 Prupe.8G078900_v2.0.a1 Prupe.8G079000_v2.0.a1 Prupe.8G079100_v2.0.a1 Prupe.8G079200_v2.0.a1 Prupe.8G079400_v2.0.a1 Prupe.8G079500_v2.0.a1 Prupe.8G079600_v2.0.a1 Prupe.8G079700_v2.0.a1 Prupe.8G079900_v2.0.a1 Prupe.8G080000_v2.0.a1 Prupe.8G080100_v2.0.a1 Prupe.8G080200_v2.0.a1 Prupe.8G080300_v2.0.a1 Prupe.8G080500_v2.0.a1 Prupe.8G080600_v2.0.a1 Prupe.8G080700_v2.0.a1 Prupe.8G080800_v2.0.a1 Prupe.8G081000_v2.0.a1 Prupe.8G081100_v2.0.a1 Prupe.8G081300_v2.0.a1 Prupe.8G081500_v2.0.a1 Prupe.8G081700_v2.0.a1 Prupe.8G157700_v2.0.a1
pyrus_communis pycom05g04350 pycom05g04390 pycom05g04400 pycom05g04410 pycom10g04550 pycom10g04560 pycom10g04570 pycom10g04580 pycom10g04590 pycom10g04600 pycom10g04610 pycom10g04630 pycom10g04640 pycom10g04650 pycom10g04660 pycom10g04680 pycom10g10040
rosa_chinensis RchiOBHm_Chr0c32g0501561 RchiOBHm_Chr2g0124401 RchiOBHm_Chr2g0124451 RchiOBHm_Chr2g0124461 RchiOBHm_Chr2g0124531 RchiOBHm_Chr2g0124561 RchiOBHm_Chr3g0483671 RchiOBHm_Chr3g0483711 RchiOBHm_Chr5g0056801 RchiOBHm_Chr5g0056821 RchiOBHm_Chr5g0056831 RchiOBHm_Chr5g0056841 RchiOBHm_Chr5g0059921 RchiOBHm_Chr6g0268901 RchiOBHm_Chr6g0268941 RchiOBHm_Chr6g0268951 RchiOBHm_Chr6g0268961 RchiOBHm_Chr7g0210461 RchiOBHm_Chr7g0210481 RchiOBHm_Chr7g0210491 RchiOBHm_Chr7g0210511 RchiOBHm_Chr7g0210531 RchiOBHm_Chr7g0210621 RchiOBHm_Chr7g0210641 RchiOBHm_Chr7g0210651 RchiOBHm_Chr7g0210661 RchiOBHm_Chr7g0210711 RchiOBHm_Chr7g0210801 RchiOBHm_Chr7g0210831 RchiOBHm_Chr7g0210851 RchiOBHm_Chr7g0210871 RchiOBHm_Chr7g0210881 RchiOBHm_Chr7g0210891 RchiOBHm_Chr7g0211121 RchiOBHm_Chr7g0211131 RchiOBHm_Chr7g0211151 RchiOBHm_Chr7g0211501 RchiOBHm_Chr7g0211511
rosa_laevigata RLG00000003016 RLG00000003020 RLG00000003021 RLG00000003031 RLG00000003032 RLG00000003033 RLG00000003034 RLG00000003040 RLG00000003041 RLG00000018801 RLG00000035128 RLG00000035129
rosa_multiflora Rmu_co8425977.1_g000001 Rmu_sc0001081.1_g000010 Rmu_sc0001081.1_g000011 Rmu_sc0001303.1_g000001 Rmu_sc0001303.1_g000002 Rmu_sc0001303.1_g000004 Rmu_sc0001303.1_g000007 Rmu_sc0001460.1_g000030 Rmu_sc0001460.1_g000035 Rmu_sc0001460.1_g000041 Rmu_sc0001460.1_g000048 Rmu_sc0002755.1_g000005 Rmu_sc0002755.1_g000011 Rmu_sc0002755.1_g000017 Rmu_sc0002755.1_g000027 Rmu_sc0003765.1_g000020 Rmu_sc0003765.1_g000042 Rmu_sc0003765.1_g000043 Rmu_sc0003765.1_g000048 Rmu_sc0003765.1_g000057 Rmu_sc0003765.1_g000058 Rmu_sc0003807.1_g000013 Rmu_sc0003807.1_g000014 Rmu_sc0003807.1_g000015 Rmu_sc0003807.1_g000018 Rmu_sc0003907.1_g000001 Rmu_sc0005302.1_g000002 Rmu_sc0005302.1_g000003 Rmu_sc0005696.1_g000001 Rmu_sc0005844.1_g000001 Rmu_sc0005844.1_g000002 Rmu_sc0005844.1_g000003 Rmu_sc0008289.1_g000006 Rmu_sc0008289.1_g000008 Rmu_sc0008289.1_g000009 Rmu_sc0008289.1_g000014 Rmu_sc0010535.1_g000012 Rmu_sc0010535.1_g000013 Rmu_sc0010535.1_g000014 Rmu_sc0010535.1_g000015 Rmu_sc0011084.1_g000001 Rmu_sc0011691.1_g000001 Rmu_sc0017239.1_g000001 Rmu_sc0018437.1_g000009 Rmu_sc0018662.1_g000001 Rmu_sc0018662.1_g000003 Rmu_sc0020409.1_g000001 Rmu_sc0024576.1_g000001 Rmu_sc0034951.1_g000001
rosa_roxburghii Rroxscaffold_1G00023480 Rroxscaffold_1G00023490 Rroxscaffold_1G00023570 Rroxscaffold_2G00119860 Rroxscaffold_2G00119910 Rroxscaffold_3G00247990 Rroxscaffold_3G00248000 Rroxscaffold_3G00248010 Rroxscaffold_3G00248060 Rroxscaffold_3G00248070 Rroxscaffold_3G00248090 Rroxscaffold_3G00248100 Rroxscaffold_3G00248210 Rroxscaffold_3G00248230 Rroxscaffold_3G00248240 Rroxscaffold_3G00248270 Rroxscaffold_3G00248290
rosa_rugosa Rorug02G0251000.1 Rorug02G0251100 Rorug02G0251100 Rorug02G0251200 Rorug02G0251300 Rorug05G0302000 Rorug05G0302100 Rorug05G0302400 Rorug05G0302500 Rorug06G0043500 Rorug06G0043600 Rorug06G0043600 Rorug07G0121600 Rorug07G0121700 Rorug07G0121800 Rorug07G0121900 Rorug07G0122300 Rorug07G0122400 Rorug07G0122500 Rorug07G0122600 Rorug07G0122700 Rorug07G0122700 Rorug07G0123100 Rorug07G0123200 Rorug07G0123300 Rorug07G0123600 Rorug07G0123700 Rorug07G0124200 Rorug07G0124300 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124600 Rorug07G0124700
rosa_wichuraiana Rw0G021160 Rw0G021170 Rw2G024970 Rw2G024980 Rw2G025000 Rw2G025020 Rw2G025030 Rw2G025040 Rw2G025050 Rw3G023170 Rw3G023180 Rw5G034930 Rw5G034940 Rw5G034960 Rw5G035050 Rw5G035060 Rw5G035070 Rw6G014100 Rw6G014110 Rw6G014130 Rw6G014140 Rw6G014150 Rw7G021690 Rw7G021700 Rw7G021710 Rw7G021720 Rw7G021740 Rw7G021750 Rw7G021760 Rw7G021770 Rw7G021790 Rw7G021800 Rw7G021810 Rw7G021820 Rw7G021900 Rw7G021910 Rw7G021920 Rw7G021930 Rw7G021940 Rw7G021950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 368, 541
AclWI GGATC 1 cut(s) 202
AcsI RAATTY 2 cut(s) 164, 467
AcuI CTGAAG 2 cut(s) 177, 480
AfaI GTAC 1 cut(s) 419
AfiI CCNNNNNNNGG 1 cut(s) 491
AflII CTTAAG 1 cut(s) 544
AgsI TTSAA 4 cut(s) 121, 216, 336, 424
AjuI GAANNNNNNNTTGG 8 cut(s) 117, 149, 150, 175, 182, 207, 453, 485
AluBI AGCT 5 cut(s) 44, 155, 285, 332, 458
AluI AGCT 5 cut(s) 44, 155, 285, 332, 458
AlwI GGATC 1 cut(s) 202
ApeKI GCWGC 2 cut(s) 57, 268
ApoI RAATTY 2 cut(s) 164, 467
AspLEI GCGC 1 cut(s) 191
AsuNHI GCTAGC 1 cut(s) 26
BbsI GAAGAC 1 cut(s) 522
BbvI GCAGC 2 cut(s) 44, 255
BccI CCATC 1 cut(s) 183
BciVI GTATCC 1 cut(s) 164
BclI TGATCA 1 cut(s) 478
BfaI CTAG 1 cut(s) 27
BfmI CTRYAG 1 cut(s) 508
BfoI RGCGCY 1 cut(s) 192
BfrI CTTAAG 1 cut(s) 544
BfuI GTATCC 1 cut(s) 164
BisI GCNGC 2 cut(s) 58, 269
BlsI GCNGC 2 cut(s) 59, 270
BmiI GGNNCC 1 cut(s) 105
BmtI GCTAGC 1 cut(s) 30
BpiI GAAGAC 1 cut(s) 522
BsaJI CCNNGG 2 cut(s) 255, 486
Bsc4I CCNNNNNNNGG 1 cut(s) 491
BseDI CCNNGG 2 cut(s) 255, 486
BseGI GGATG 3 cut(s) 178, 311, 481
BseLI CCNNNNNNNGG 1 cut(s) 491
BseMII CTCAG 2 cut(s) 137, 440
BseXI GCAGC 2 cut(s) 44, 255
BsiSI CCGG 1 cut(s) 265
BslI CCNNNNNNNGG 1 cut(s) 491
Bsp143I GATC 3 cut(s) 207, 478, 529
Bsp19I CCATGG 2 cut(s) 255, 486
BspACI CCGC 2 cut(s) 368, 541
BspCNI CTCAG 2 cut(s) 138, 441
BspLI GGNNCC 1 cut(s) 105
BspMAI CTGCAG 1 cut(s) 512
BspOI GCTAGC 1 cut(s) 30
BspPI GGATC 1 cut(s) 202
BspTI CTTAAG 1 cut(s) 544
BssECI CCNNGG 2 cut(s) 255, 486
BssMI GATC 3 cut(s) 207, 478, 529
BssT1I CCWWGG 2 cut(s) 255, 486
BstAFI CTTAAG 1 cut(s) 544
BstC8I GCNNGC 1 cut(s) 28
BstDEI CTNAG 4 cut(s) 146, 281, 343, 449
BstDSI CCRYGG 2 cut(s) 255, 486
BstF5I GGATG 3 cut(s) 178, 311, 481
BstH2I RGCGCY 1 cut(s) 192
BstHHI GCGC 1 cut(s) 191
BstKTI GATC 3 cut(s) 210, 481, 532
BstMBI GATC 3 cut(s) 207, 478, 529
BstSFI CTRYAG 1 cut(s) 508
BstV1I GCAGC 2 cut(s) 44, 255
BstV2I GAAGAC 1 cut(s) 522
BstX2I RGATCY 1 cut(s) 207
BstYI RGATCY 1 cut(s) 207
BsuI GTATCC 1 cut(s) 164
BtgI CCRYGG 2 cut(s) 255, 486
BtsCI GGATG 3 cut(s) 178, 311, 481
BtsI GCAGTG 1 cut(s) 517
BtsIMutI CAGTG 1 cut(s) 517
Cac8I GCNNGC 1 cut(s) 28
CfoI GCGC 1 cut(s) 191
Csp6I GTAC 1 cut(s) 418
CviAII CATG 2 cut(s) 256, 487
CviJI RGCY 9 cut(s) 44, 57, 155, 254, 268, 285, 332, 360, 458
CviKI_1 RGCY 9 cut(s) 44, 57, 155, 254, 268, 285, 332, 360, 458
CviQI GTAC 1 cut(s) 418
DdeI CTNAG 4 cut(s) 146, 281, 343, 449
DpnI GATC 3 cut(s) 209, 480, 531
DpnII GATC 3 cut(s) 207, 478, 529
Eco130I CCWWGG 2 cut(s) 255, 486
Eco32I GATATC 1 cut(s) 349
Eco57I CTGAAG 2 cut(s) 177, 480
EcoRV GATATC 1 cut(s) 349
EcoT14I CCWWGG 2 cut(s) 255, 486
ErhI CCWWGG 2 cut(s) 255, 486
FaeI CATG 2 cut(s) 259, 490
FaiI YATR 9 cut(s) 72, 115, 234, 248, 257, 375, 440, 477, 488
FatI CATG 2 cut(s) 255, 486
FauI CCCGC 1 cut(s) 548
FbaI TGATCA 1 cut(s) 478
Fnu4HI GCNGC 2 cut(s) 58, 269
FokI GGATG 3 cut(s) 165, 298, 468
Fsp4HI GCNGC 2 cut(s) 58, 269
FspBI CTAG 1 cut(s) 27
GlaI GCGC 1 cut(s) 190
GluI GCNGC 2 cut(s) 58, 269
HaeII RGCGCY 1 cut(s) 192
HapII CCGG 1 cut(s) 265
HhaI GCGC 1 cut(s) 191
Hin1II CATG 2 cut(s) 259, 490
Hin6I GCGC 1 cut(s) 189
HinP1I GCGC 1 cut(s) 189
HinfI GANTC 5 cut(s) 21, 148, 385, 406, 451
HpaII CCGG 1 cut(s) 265
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 1 cut(s) 390
Hpy188III TCNNGA 2 cut(s) 49, 137
Hpy8I GTNNAC 1 cut(s) 322
HpyAV CCTTC 2 cut(s) 441, 532
HpyCH4V TGCA 2 cut(s) 65, 510
HpyF3I CTNAG 4 cut(s) 146, 281, 343, 449
Hsp92II CATG 2 cut(s) 259, 490
HspAI GCGC 1 cut(s) 189
Ksp22I TGATCA 1 cut(s) 478
Kzo9I GATC 3 cut(s) 207, 478, 529
LmnI GCTCC 1 cut(s) 290
LpnPI CCDG 6 cut(s) 98, 122, 218, 278, 285, 520
Lsp1109I GCAGC 2 cut(s) 44, 255
MaeI CTAG 1 cut(s) 27
MalI GATC 3 cut(s) 209, 480, 531
MboI GATC 3 cut(s) 207, 478, 529
MboII GAAGA 8 cut(s) 100, 170, 173, 300, 403, 473, 476, 527
MfeI CAATTG 1 cut(s) 11
MflI RGATCY 1 cut(s) 207
MluCI AATT 4 cut(s) 11, 164, 276, 467
MlyI GAGTC 3 cut(s) 157, 394, 460
MmeI TCCRAC 2 cut(s) 55, 358
MseI TTAA 1 cut(s) 545
MspCI CTTAAG 1 cut(s) 544
MspI CCGG 1 cut(s) 265
MunI CAATTG 1 cut(s) 11
NcoI CCATGG 2 cut(s) 255, 486
NdeII GATC 3 cut(s) 207, 478, 529
NheI GCTAGC 1 cut(s) 26
NlaIII CATG 2 cut(s) 259, 490
NlaIV GGNNCC 1 cut(s) 105
PfeI GAWTC 2 cut(s) 21, 406
PkrI GCNGC 2 cut(s) 59, 270
PleI GAGTC 3 cut(s) 156, 393, 459
PpsI GAGTC 3 cut(s) 156, 393, 459
PspN4I GGNNCC 1 cut(s) 105
PstI CTGCAG 1 cut(s) 512
PsuI RGATCY 1 cut(s) 207
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
SaqAI TTAA 1 cut(s) 545
SatI GCNGC 2 cut(s) 58, 269
Sau3AI GATC 3 cut(s) 207, 478, 529
SchI GAGTC 3 cut(s) 157, 394, 460
SetI ASST 9 cut(s) 46, 130, 157, 287, 334, 344, 433, 460, 524
SfcI CTRYAG 1 cut(s) 508
SmlI CTYRAG 1 cut(s) 544
SmoI CTYRAG 1 cut(s) 544
Sse9I AATT 4 cut(s) 11, 164, 276, 467
SsiI CCGC 2 cut(s) 368, 541
SspMI CTAG 1 cut(s) 27
StyI CCWWGG 2 cut(s) 255, 486
TasI AATT 4 cut(s) 11, 164, 276, 467
TfiI GAWTC 2 cut(s) 21, 406
Tru1I TTAA 1 cut(s) 545
Tru9I TTAA 1 cut(s) 545
TscAI CASTG 1 cut(s) 517
TseI GCWGC 2 cut(s) 57, 268
TspDTI ATGAA 2 cut(s) 300, 423
TspRI CASTG 1 cut(s) 517
Vha464I CTTAAG 1 cut(s) 544
XapI RAATTY 2 cut(s) 164, 467
XspI CTAG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.