Rmu_sc0034951.1_g000001

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0034951.1
OG0000092
Physical Location & Seq
Forward (+)
1 .. 384
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0034951.1_g000001.1.cds

Sequence Viewer

Length: 264 bp
tatacagataccatgggtttccgattgcctcgaattgctagcacaaagacatcagatatcccaaaaggctactttgtggtctatgttggagagagccagaagaaacgatttgtggttccaatatcatatttgaaccaacctttgtttcaggatttgctgagtcaagctgaagaagaatttggataccatcatccaatgggtggtatcacaattccttgcagtgaagacaccttcatgaatctcacttcccgcttaagtgtgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

87

Amino Acids

9.9

Weight (kDa)

6.08

Isoelectric Point (pI)

32.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000092)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21210 AT2G21210 AT3G20220 AT4G34780 AT4G38840
fragaria_vesca FvH4_2g10810 FvH4_2g10820 FvH4_2g10850 FvH4_2g10870 FvH4_3g13730 FvH4_5g22620 FvH4_5g22660 FvH4_5g22690 FvH4_5g22700 FvH4_5g22780 FvH4_5g22790 FvH4_5g22810 FvH4_5g22821 FvH4_5g22822 FvH4_5g24600 FvH4_5g24720
malus_domestica MD05G1051600.v1.1 MD05G1051700.v1.1 MD05G1051800.v1.1 MD05G1052000.v1.1 MD05G1052100.v1.1 MD05G1052200.v1.1 MD05G1052300.v1.1 MD05G1052400.v1.1 MD05G1113300.v1.1 MD10G1059200.v1.1 MD10G1059500.v1.1 MD10G1059600.v1.1 MD10G1059700.v1.1 MD10G1059800.v1.1 MD10G1060100.v1.1 MD10G1060200.v1.1 MD10G1060300.v1.1 MD10G1060400.v1.1 MD10G1060500.v1.1 MD10G1060600.v1.1 MD10G1060700.v1.1 MD10G1060800.v1.1 MD10G1060900.v1.1 MD10G1061000.v1.1 MD10G1061100.v1.1
prunus_persica Prupe.8G078600_v2.0.a1 Prupe.8G078700_v2.0.a1 Prupe.8G078900_v2.0.a1 Prupe.8G079000_v2.0.a1 Prupe.8G079100_v2.0.a1 Prupe.8G079200_v2.0.a1 Prupe.8G079400_v2.0.a1 Prupe.8G079500_v2.0.a1 Prupe.8G079600_v2.0.a1 Prupe.8G079700_v2.0.a1 Prupe.8G079900_v2.0.a1 Prupe.8G080000_v2.0.a1 Prupe.8G080100_v2.0.a1 Prupe.8G080200_v2.0.a1 Prupe.8G080300_v2.0.a1 Prupe.8G080500_v2.0.a1 Prupe.8G080600_v2.0.a1 Prupe.8G080700_v2.0.a1 Prupe.8G080800_v2.0.a1 Prupe.8G081000_v2.0.a1 Prupe.8G081100_v2.0.a1 Prupe.8G081300_v2.0.a1 Prupe.8G081500_v2.0.a1 Prupe.8G081700_v2.0.a1 Prupe.8G157700_v2.0.a1
pyrus_communis pycom05g04350 pycom05g04390 pycom05g04400 pycom05g04410 pycom10g04550 pycom10g04560 pycom10g04570 pycom10g04580 pycom10g04590 pycom10g04600 pycom10g04610 pycom10g04630 pycom10g04640 pycom10g04650 pycom10g04660 pycom10g04680 pycom10g10040
rosa_chinensis RchiOBHm_Chr0c32g0501561 RchiOBHm_Chr2g0124401 RchiOBHm_Chr2g0124451 RchiOBHm_Chr2g0124461 RchiOBHm_Chr2g0124531 RchiOBHm_Chr2g0124561 RchiOBHm_Chr3g0483671 RchiOBHm_Chr3g0483711 RchiOBHm_Chr5g0056801 RchiOBHm_Chr5g0056821 RchiOBHm_Chr5g0056831 RchiOBHm_Chr5g0056841 RchiOBHm_Chr5g0059921 RchiOBHm_Chr6g0268901 RchiOBHm_Chr6g0268941 RchiOBHm_Chr6g0268951 RchiOBHm_Chr6g0268961 RchiOBHm_Chr7g0210461 RchiOBHm_Chr7g0210481 RchiOBHm_Chr7g0210491 RchiOBHm_Chr7g0210511 RchiOBHm_Chr7g0210531 RchiOBHm_Chr7g0210621 RchiOBHm_Chr7g0210641 RchiOBHm_Chr7g0210651 RchiOBHm_Chr7g0210661 RchiOBHm_Chr7g0210711 RchiOBHm_Chr7g0210801 RchiOBHm_Chr7g0210831 RchiOBHm_Chr7g0210851 RchiOBHm_Chr7g0210871 RchiOBHm_Chr7g0210881 RchiOBHm_Chr7g0210891 RchiOBHm_Chr7g0211121 RchiOBHm_Chr7g0211131 RchiOBHm_Chr7g0211151 RchiOBHm_Chr7g0211501 RchiOBHm_Chr7g0211511
rosa_laevigata RLG00000003016 RLG00000003020 RLG00000003021 RLG00000003031 RLG00000003032 RLG00000003033 RLG00000003034 RLG00000003040 RLG00000003041 RLG00000018801 RLG00000035128 RLG00000035129
rosa_multiflora Rmu_co8425977.1_g000001 Rmu_sc0001081.1_g000010 Rmu_sc0001081.1_g000011 Rmu_sc0001303.1_g000001 Rmu_sc0001303.1_g000002 Rmu_sc0001303.1_g000004 Rmu_sc0001303.1_g000007 Rmu_sc0001460.1_g000030 Rmu_sc0001460.1_g000035 Rmu_sc0001460.1_g000041 Rmu_sc0001460.1_g000048 Rmu_sc0002755.1_g000005 Rmu_sc0002755.1_g000011 Rmu_sc0002755.1_g000017 Rmu_sc0002755.1_g000027 Rmu_sc0003765.1_g000020 Rmu_sc0003765.1_g000042 Rmu_sc0003765.1_g000043 Rmu_sc0003765.1_g000048 Rmu_sc0003765.1_g000057 Rmu_sc0003765.1_g000058 Rmu_sc0003807.1_g000013 Rmu_sc0003807.1_g000014 Rmu_sc0003807.1_g000015 Rmu_sc0003807.1_g000018 Rmu_sc0003907.1_g000001 Rmu_sc0005302.1_g000002 Rmu_sc0005302.1_g000003 Rmu_sc0005696.1_g000001 Rmu_sc0005844.1_g000001 Rmu_sc0005844.1_g000002 Rmu_sc0005844.1_g000003 Rmu_sc0008289.1_g000006 Rmu_sc0008289.1_g000008 Rmu_sc0008289.1_g000009 Rmu_sc0008289.1_g000014 Rmu_sc0010535.1_g000012 Rmu_sc0010535.1_g000013 Rmu_sc0010535.1_g000014 Rmu_sc0010535.1_g000015 Rmu_sc0011084.1_g000001 Rmu_sc0011691.1_g000001 Rmu_sc0017239.1_g000001 Rmu_sc0018437.1_g000009 Rmu_sc0018662.1_g000001 Rmu_sc0018662.1_g000003 Rmu_sc0020409.1_g000001 Rmu_sc0024576.1_g000001 Rmu_sc0034951.1_g000001
rosa_roxburghii Rroxscaffold_1G00023480 Rroxscaffold_1G00023490 Rroxscaffold_1G00023570 Rroxscaffold_2G00119860 Rroxscaffold_2G00119910 Rroxscaffold_3G00247990 Rroxscaffold_3G00248000 Rroxscaffold_3G00248010 Rroxscaffold_3G00248060 Rroxscaffold_3G00248070 Rroxscaffold_3G00248090 Rroxscaffold_3G00248100 Rroxscaffold_3G00248210 Rroxscaffold_3G00248230 Rroxscaffold_3G00248240 Rroxscaffold_3G00248270 Rroxscaffold_3G00248290
rosa_rugosa Rorug02G0251000.1 Rorug02G0251100 Rorug02G0251100 Rorug02G0251200 Rorug02G0251300 Rorug05G0302000 Rorug05G0302100 Rorug05G0302400 Rorug05G0302500 Rorug06G0043500 Rorug06G0043600 Rorug06G0043600 Rorug07G0121600 Rorug07G0121700 Rorug07G0121800 Rorug07G0121900 Rorug07G0122300 Rorug07G0122400 Rorug07G0122500 Rorug07G0122600 Rorug07G0122700 Rorug07G0122700 Rorug07G0123100 Rorug07G0123200 Rorug07G0123300 Rorug07G0123600 Rorug07G0123700 Rorug07G0124200 Rorug07G0124300 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124600 Rorug07G0124700
rosa_wichuraiana Rw0G021160 Rw0G021170 Rw2G024970 Rw2G024980 Rw2G025000 Rw2G025020 Rw2G025030 Rw2G025040 Rw2G025050 Rw3G023170 Rw3G023180 Rw5G034930 Rw5G034940 Rw5G034960 Rw5G035050 Rw5G035060 Rw5G035070 Rw6G014100 Rw6G014110 Rw6G014130 Rw6G014140 Rw6G014150 Rw7G021690 Rw7G021700 Rw7G021710 Rw7G021720 Rw7G021740 Rw7G021750 Rw7G021760 Rw7G021770 Rw7G021790 Rw7G021800 Rw7G021810 Rw7G021820 Rw7G021900 Rw7G021910 Rw7G021920 Rw7G021930 Rw7G021940 Rw7G021950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 200
AciI CCGC 1 cut(s) 250
AcsI RAATTY 1 cut(s) 176
AcuI CTGAAG 1 cut(s) 189
AfiI CCNNNNNNNGG 1 cut(s) 200
AflII CTTAAG 1 cut(s) 253
AgsI TTSAA 1 cut(s) 133
AjuI GAANNNNNNNTTGG 4 cut(s) 129, 161, 162, 194
AluBI AGCT 1 cut(s) 167
AluI AGCT 1 cut(s) 167
ApoI RAATTY 1 cut(s) 176
AsuNHI GCTAGC 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 231
BccI CCATC 1 cut(s) 195
BciVI GTATCC 1 cut(s) 176
BfaI CTAG 1 cut(s) 39
BfrI CTTAAG 1 cut(s) 253
BfuI GTATCC 1 cut(s) 176
BmiI GGNNCC 1 cut(s) 117
BmtI GCTAGC 1 cut(s) 42
BpiI GAAGAC 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 12
Bsc4I CCNNNNNNNGG 1 cut(s) 200
BseDI CCNNGG 1 cut(s) 12
BseGI GGATG 1 cut(s) 190
BseLI CCNNNNNNNGG 1 cut(s) 200
BseMII CTCAG 1 cut(s) 149
BslI CCNNNNNNNGG 1 cut(s) 200
Bsp19I CCATGG 1 cut(s) 12
BspACI CCGC 1 cut(s) 250
BspCNI CTCAG 1 cut(s) 150
BspHI TCATGA 1 cut(s) 234
BspLI GGNNCC 1 cut(s) 117
BspOI GCTAGC 1 cut(s) 42
BspTI CTTAAG 1 cut(s) 253
BssECI CCNNGG 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 12
BstAFI CTTAAG 1 cut(s) 253
BstC8I GCNNGC 1 cut(s) 40
BstDEI CTNAG 1 cut(s) 158
BstDSI CCRYGG 1 cut(s) 12
BstF5I GGATG 1 cut(s) 190
BstV2I GAAGAC 1 cut(s) 231
BsuI GTATCC 1 cut(s) 176
BtgI CCRYGG 1 cut(s) 12
BtsCI GGATG 1 cut(s) 190
BtsI GCAGTG 1 cut(s) 226
BtsIMutI CAGTG 1 cut(s) 226
Cac8I GCNNGC 1 cut(s) 40
CciI TCATGA 1 cut(s) 234
CviAII CATG 2 cut(s) 13, 235
CviJI RGCY 3 cut(s) 69, 96, 167
CviKI_1 RGCY 3 cut(s) 69, 96, 167
DdeI CTNAG 1 cut(s) 158
Eco130I CCWWGG 1 cut(s) 12
Eco32I GATATC 1 cut(s) 58
Eco57I CTGAAG 1 cut(s) 189
EcoRV GATATC 1 cut(s) 58
EcoT14I CCWWGG 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 2 cut(s) 16, 238
FaiI YATR 5 cut(s) 3, 14, 84, 127, 236
FatI CATG 2 cut(s) 12, 234
FauI CCCGC 1 cut(s) 257
FokI GGATG 1 cut(s) 177
FspBI CTAG 1 cut(s) 39
Hin1II CATG 2 cut(s) 16, 238
HinfI GANTC 2 cut(s) 160, 238
Hpy188I TCNGA 2 cut(s) 23, 55
Hpy188III TCNNGA 2 cut(s) 149, 235
HpyAV CCTTC 1 cut(s) 241
HpyCH4V TGCA 1 cut(s) 219
HpyF3I CTNAG 1 cut(s) 158
Hsp92II CATG 2 cut(s) 16, 238
LpnPI CCDG 2 cut(s) 110, 134
MaeI CTAG 1 cut(s) 39
MboII GAAGA 4 cut(s) 112, 182, 185, 236
MluCI AATT 3 cut(s) 33, 176, 210
MlyI GAGTC 1 cut(s) 169
MmeI TCCRAC 1 cut(s) 67
MnlI CCTC 1 cut(s) 39
MseI TTAA 1 cut(s) 254
MslI CAYNNNNRTG 1 cut(s) 233
MspCI CTTAAG 1 cut(s) 253
NcoI CCATGG 1 cut(s) 12
NheI GCTAGC 1 cut(s) 38
NlaIII CATG 2 cut(s) 16, 238
NlaIV GGNNCC 1 cut(s) 117
PagI TCATGA 1 cut(s) 234
PfeI GAWTC 1 cut(s) 238
PflMI CCANNNNNTGG 1 cut(s) 200
PleI GAGTC 1 cut(s) 168
PpsI GAGTC 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 117
RseI CAYNNNNRTG 1 cut(s) 233
SaqAI TTAA 1 cut(s) 254
SchI GAGTC 1 cut(s) 169
SetI ASST 3 cut(s) 142, 169, 233
SgeI CNNG 8 cut(s) 25, 42, 51, 109, 161, 176, 228, 247
SmiMI CAYNNNNRTG 1 cut(s) 233
SmlI CTYRAG 1 cut(s) 253
SmoI CTYRAG 1 cut(s) 253
Sse9I AATT 3 cut(s) 33, 176, 210
SsiI CCGC 1 cut(s) 250
SspMI CTAG 1 cut(s) 39
StyI CCWWGG 1 cut(s) 12
TaqI TCGA 1 cut(s) 31
TasI AATT 3 cut(s) 33, 176, 210
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TscAI CASTG 1 cut(s) 226
TspDTI ATGAA 2 cut(s) 223, 251
TspRI CASTG 1 cut(s) 226
Van91I CCANNNNNTGG 1 cut(s) 200
Vha464I CTTAAG 1 cut(s) 253
XapI RAATTY 1 cut(s) 176
XspI CTAG 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.