Prupe.8G079400_v2.0.a1

auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000092
Physical Location & Seq
Forward (+)
11317660 .. 11318049
390 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G079400.1

Sequence Viewer

Length: 390 bp
ATGATCAAGTTCACAAGCAGCAAGTATCTCCTTGCCAAGCATCAAAACTCTCTCTGTTTCCTAACTCCTTTGAATTCTTTTTCTTCTTCCAACTCCAATTTAAAAACAATGGGGTTCCGGTTTCCAGGAATTGTCAACGCCAAGAAAAGTCTAAAACATTCAGCTTCTTCAAAGACCTTAGAGATCCCAAAAGGCCATTTTGCAGTGTATGTTGGGAAGAACCAGAAGAAGAGATTTGTAATTCCAGTATCATACTTGAATGAGCCTTTATTCCTGGATTTGCTTAATCAAGCTGAAGAAGAATTTGGATACGATCATCCCATGGTTGGTATCACAATACCCTGCAGTGAAGACAGCTTTGTTCATCTGACTTCCTGCTTAAGTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

130

Amino Acids

14.43

Weight (kDa)

9.2

Isoelectric Point (pI)

27.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000092)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21210 AT2G21210 AT3G20220 AT4G34780 AT4G38840
fragaria_vesca FvH4_2g10810 FvH4_2g10820 FvH4_2g10850 FvH4_2g10870 FvH4_3g13730 FvH4_5g22620 FvH4_5g22660 FvH4_5g22690 FvH4_5g22700 FvH4_5g22780 FvH4_5g22790 FvH4_5g22810 FvH4_5g22821 FvH4_5g22822 FvH4_5g24600 FvH4_5g24720
malus_domestica MD05G1051600.v1.1 MD05G1051700.v1.1 MD05G1051800.v1.1 MD05G1052000.v1.1 MD05G1052100.v1.1 MD05G1052200.v1.1 MD05G1052300.v1.1 MD05G1052400.v1.1 MD05G1113300.v1.1 MD10G1059200.v1.1 MD10G1059500.v1.1 MD10G1059600.v1.1 MD10G1059700.v1.1 MD10G1059800.v1.1 MD10G1060100.v1.1 MD10G1060200.v1.1 MD10G1060300.v1.1 MD10G1060400.v1.1 MD10G1060500.v1.1 MD10G1060600.v1.1 MD10G1060700.v1.1 MD10G1060800.v1.1 MD10G1060900.v1.1 MD10G1061000.v1.1 MD10G1061100.v1.1
prunus_persica Prupe.8G078600_v2.0.a1 Prupe.8G078700_v2.0.a1 Prupe.8G078900_v2.0.a1 Prupe.8G079000_v2.0.a1 Prupe.8G079100_v2.0.a1 Prupe.8G079200_v2.0.a1 Prupe.8G079400_v2.0.a1 Prupe.8G079500_v2.0.a1 Prupe.8G079600_v2.0.a1 Prupe.8G079700_v2.0.a1 Prupe.8G079900_v2.0.a1 Prupe.8G080000_v2.0.a1 Prupe.8G080100_v2.0.a1 Prupe.8G080200_v2.0.a1 Prupe.8G080300_v2.0.a1 Prupe.8G080500_v2.0.a1 Prupe.8G080600_v2.0.a1 Prupe.8G080700_v2.0.a1 Prupe.8G080800_v2.0.a1 Prupe.8G081000_v2.0.a1 Prupe.8G081100_v2.0.a1 Prupe.8G081300_v2.0.a1 Prupe.8G081500_v2.0.a1 Prupe.8G081700_v2.0.a1 Prupe.8G157700_v2.0.a1
pyrus_communis pycom05g04350 pycom05g04390 pycom05g04400 pycom05g04410 pycom10g04550 pycom10g04560 pycom10g04570 pycom10g04580 pycom10g04590 pycom10g04600 pycom10g04610 pycom10g04630 pycom10g04640 pycom10g04650 pycom10g04660 pycom10g04680 pycom10g10040
rosa_chinensis RchiOBHm_Chr0c32g0501561 RchiOBHm_Chr2g0124401 RchiOBHm_Chr2g0124451 RchiOBHm_Chr2g0124461 RchiOBHm_Chr2g0124531 RchiOBHm_Chr2g0124561 RchiOBHm_Chr3g0483671 RchiOBHm_Chr3g0483711 RchiOBHm_Chr5g0056801 RchiOBHm_Chr5g0056821 RchiOBHm_Chr5g0056831 RchiOBHm_Chr5g0056841 RchiOBHm_Chr5g0059921 RchiOBHm_Chr6g0268901 RchiOBHm_Chr6g0268941 RchiOBHm_Chr6g0268951 RchiOBHm_Chr6g0268961 RchiOBHm_Chr7g0210461 RchiOBHm_Chr7g0210481 RchiOBHm_Chr7g0210491 RchiOBHm_Chr7g0210511 RchiOBHm_Chr7g0210531 RchiOBHm_Chr7g0210621 RchiOBHm_Chr7g0210641 RchiOBHm_Chr7g0210651 RchiOBHm_Chr7g0210661 RchiOBHm_Chr7g0210711 RchiOBHm_Chr7g0210801 RchiOBHm_Chr7g0210831 RchiOBHm_Chr7g0210851 RchiOBHm_Chr7g0210871 RchiOBHm_Chr7g0210881 RchiOBHm_Chr7g0210891 RchiOBHm_Chr7g0211121 RchiOBHm_Chr7g0211131 RchiOBHm_Chr7g0211151 RchiOBHm_Chr7g0211501 RchiOBHm_Chr7g0211511
rosa_laevigata RLG00000003016 RLG00000003020 RLG00000003021 RLG00000003031 RLG00000003032 RLG00000003033 RLG00000003034 RLG00000003040 RLG00000003041 RLG00000018801 RLG00000035128 RLG00000035129
rosa_multiflora Rmu_co8425977.1_g000001 Rmu_sc0001081.1_g000010 Rmu_sc0001081.1_g000011 Rmu_sc0001303.1_g000001 Rmu_sc0001303.1_g000002 Rmu_sc0001303.1_g000004 Rmu_sc0001303.1_g000007 Rmu_sc0001460.1_g000030 Rmu_sc0001460.1_g000035 Rmu_sc0001460.1_g000041 Rmu_sc0001460.1_g000048 Rmu_sc0002755.1_g000005 Rmu_sc0002755.1_g000011 Rmu_sc0002755.1_g000017 Rmu_sc0002755.1_g000027 Rmu_sc0003765.1_g000020 Rmu_sc0003765.1_g000042 Rmu_sc0003765.1_g000043 Rmu_sc0003765.1_g000048 Rmu_sc0003765.1_g000057 Rmu_sc0003765.1_g000058 Rmu_sc0003807.1_g000013 Rmu_sc0003807.1_g000014 Rmu_sc0003807.1_g000015 Rmu_sc0003807.1_g000018 Rmu_sc0003907.1_g000001 Rmu_sc0005302.1_g000002 Rmu_sc0005302.1_g000003 Rmu_sc0005696.1_g000001 Rmu_sc0005844.1_g000001 Rmu_sc0005844.1_g000002 Rmu_sc0005844.1_g000003 Rmu_sc0008289.1_g000006 Rmu_sc0008289.1_g000008 Rmu_sc0008289.1_g000009 Rmu_sc0008289.1_g000014 Rmu_sc0010535.1_g000012 Rmu_sc0010535.1_g000013 Rmu_sc0010535.1_g000014 Rmu_sc0010535.1_g000015 Rmu_sc0011084.1_g000001 Rmu_sc0011691.1_g000001 Rmu_sc0017239.1_g000001 Rmu_sc0018437.1_g000009 Rmu_sc0018662.1_g000001 Rmu_sc0018662.1_g000003 Rmu_sc0020409.1_g000001 Rmu_sc0024576.1_g000001 Rmu_sc0034951.1_g000001
rosa_roxburghii Rroxscaffold_1G00023480 Rroxscaffold_1G00023490 Rroxscaffold_1G00023570 Rroxscaffold_2G00119860 Rroxscaffold_2G00119910 Rroxscaffold_3G00247990 Rroxscaffold_3G00248000 Rroxscaffold_3G00248010 Rroxscaffold_3G00248060 Rroxscaffold_3G00248070 Rroxscaffold_3G00248090 Rroxscaffold_3G00248100 Rroxscaffold_3G00248210 Rroxscaffold_3G00248230 Rroxscaffold_3G00248240 Rroxscaffold_3G00248270 Rroxscaffold_3G00248290
rosa_rugosa Rorug02G0251000.1 Rorug02G0251100 Rorug02G0251100 Rorug02G0251200 Rorug02G0251300 Rorug05G0302000 Rorug05G0302100 Rorug05G0302400 Rorug05G0302500 Rorug06G0043500 Rorug06G0043600 Rorug06G0043600 Rorug07G0121600 Rorug07G0121700 Rorug07G0121800 Rorug07G0121900 Rorug07G0122300 Rorug07G0122400 Rorug07G0122500 Rorug07G0122600 Rorug07G0122700 Rorug07G0122700 Rorug07G0123100 Rorug07G0123200 Rorug07G0123300 Rorug07G0123600 Rorug07G0123700 Rorug07G0124200 Rorug07G0124300 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124600 Rorug07G0124700
rosa_wichuraiana Rw0G021160 Rw0G021170 Rw2G024970 Rw2G024980 Rw2G025000 Rw2G025020 Rw2G025030 Rw2G025040 Rw2G025050 Rw3G023170 Rw3G023180 Rw5G034930 Rw5G034940 Rw5G034960 Rw5G035050 Rw5G035060 Rw5G035070 Rw6G014100 Rw6G014110 Rw6G014130 Rw6G014140 Rw6G014150 Rw7G021690 Rw7G021700 Rw7G021710 Rw7G021720 Rw7G021740 Rw7G021750 Rw7G021760 Rw7G021770 Rw7G021790 Rw7G021800 Rw7G021810 Rw7G021820 Rw7G021900 Rw7G021910 Rw7G021920 Rw7G021930 Rw7G021940 Rw7G021950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 178
AcsI RAATTY 2 cut(s) 73, 302
AcuI CTGAAG 1 cut(s) 315
AfiI CCNNNNNNNGG 1 cut(s) 326
AflII CTTAAG 1 cut(s) 379
AgsI TTSAA 3 cut(s) 73, 171, 259
AjnI CCWGG 2 cut(s) 124, 273
AjuI GAANNNNNNNTTGG 2 cut(s) 288, 320
AluBI AGCT 3 cut(s) 164, 293, 357
AluI AGCT 3 cut(s) 164, 293, 357
AlwI GGATC 1 cut(s) 178
AoxI GGCC 1 cut(s) 193
ApeKI GCWGC 1 cut(s) 18
ApoI RAATTY 2 cut(s) 73, 302
BbsI GAAGAC 1 cut(s) 357
BbvI GCAGC 1 cut(s) 30
BciT130I CCWGG 2 cut(s) 126, 275
BciVI GTATCC 1 cut(s) 302
BclI TGATCA 1 cut(s) 3
BfmI CTRYAG 1 cut(s) 343
BfrI CTTAAG 1 cut(s) 379
BfuI GTATCC 1 cut(s) 302
BisI GCNGC 1 cut(s) 19
BlsI GCNGC 1 cut(s) 20
Bme1390I CCNGG 2 cut(s) 126, 275
BmiI GGNNCC 1 cut(s) 116
BmrFI CCNGG 2 cut(s) 126, 275
BmsI GCATC 1 cut(s) 49
BpiI GAAGAC 1 cut(s) 357
BsaJI CCNNGG 1 cut(s) 321
BsaWI WCCGGW 1 cut(s) 117
Bsc4I CCNNNNNNNGG 1 cut(s) 326
Bse1I ACTGG 1 cut(s) 245
BseBI CCWGG 2 cut(s) 126, 275
BseDI CCNNGG 1 cut(s) 321
BseGI GGATG 1 cut(s) 316
BseLI CCNNNNNNNGG 1 cut(s) 326
BseNI ACTGG 1 cut(s) 245
BseXI GCAGC 1 cut(s) 30
BshFI GGCC 1 cut(s) 195
BsiSI CCGG 1 cut(s) 118
BslI CCNNNNNNNGG 1 cut(s) 326
BsnI GGCC 1 cut(s) 195
Bsp143I GATC 3 cut(s) 3, 183, 313
Bsp19I CCATGG 1 cut(s) 321
BspANI GGCC 1 cut(s) 195
BspLI GGNNCC 1 cut(s) 116
BspMAI CTGCAG 1 cut(s) 347
BspPI GGATC 1 cut(s) 178
BspTI CTTAAG 1 cut(s) 379
BsrI ACTGG 1 cut(s) 245
BssECI CCNNGG 1 cut(s) 321
BssMI GATC 3 cut(s) 3, 183, 313
BssT1I CCWWGG 1 cut(s) 321
Bst2UI CCWGG 2 cut(s) 126, 275
Bst6I CTCTTC 1 cut(s) 224
BstAFI CTTAAG 1 cut(s) 379
BstDEI CTNAG 1 cut(s) 178
BstDSI CCRYGG 1 cut(s) 321
BstF5I GGATG 1 cut(s) 316
BstKTI GATC 3 cut(s) 6, 186, 316
BstMBI GATC 3 cut(s) 3, 183, 313
BstNI CCWGG 2 cut(s) 126, 275
BstSCI CCNGG 2 cut(s) 124, 273
BstSFI CTRYAG 1 cut(s) 343
BstV1I GCAGC 1 cut(s) 30
BstV2I GAAGAC 1 cut(s) 357
BstX2I RGATCY 1 cut(s) 183
BstYI RGATCY 1 cut(s) 183
BsuI GTATCC 1 cut(s) 302
BsuRI GGCC 1 cut(s) 195
BtgI CCRYGG 1 cut(s) 321
BtsCI GGATG 1 cut(s) 316
BtsI GCAGTG 2 cut(s) 210, 352
BtsIMutI CAGTG 2 cut(s) 210, 352
CviAII CATG 1 cut(s) 322
CviJI RGCY 5 cut(s) 164, 195, 265, 293, 357
CviKI_1 RGCY 5 cut(s) 164, 195, 265, 293, 357
DdeI CTNAG 1 cut(s) 178
DpnI GATC 3 cut(s) 5, 185, 315
DpnII GATC 3 cut(s) 3, 183, 313
DraI TTTAAA 1 cut(s) 102
Eam1104I CTCTTC 1 cut(s) 224
EarI CTCTTC 1 cut(s) 224
Eco130I CCWWGG 1 cut(s) 321
Eco57I CTGAAG 1 cut(s) 315
EcoRI GAATTC 1 cut(s) 73
EcoRII CCWGG 2 cut(s) 124, 273
EcoT14I CCWWGG 1 cut(s) 321
ErhI CCWWGG 1 cut(s) 321
FaeI CATG 1 cut(s) 325
FaiI YATR 4 cut(s) 210, 253, 323, 388
FatI CATG 1 cut(s) 321
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 19
FokI GGATG 1 cut(s) 303
Fsp4HI GCNGC 1 cut(s) 19
GluI GCNGC 1 cut(s) 19
HaeIII GGCC 1 cut(s) 195
HapII CCGG 1 cut(s) 118
Hin1II CATG 1 cut(s) 325
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HpaII CCGG 1 cut(s) 118
Hpy166II GTNNAC 2 cut(s) 12, 136
Hpy188I TCNGA 1 cut(s) 369
Hpy8I GTNNAC 2 cut(s) 12, 136
HpyCH4V TGCA 2 cut(s) 203, 345
HpyF3I CTNAG 1 cut(s) 178
Hsp92II CATG 1 cut(s) 325
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 183, 313
LpnPI CCDG 8 cut(s) 111, 131, 138, 236, 258, 260, 287, 355
Lsp1109I GCAGC 1 cut(s) 30
LweI GCATC 1 cut(s) 49
MalI GATC 3 cut(s) 5, 185, 315
MboI GATC 3 cut(s) 3, 183, 313
MboII GAAGA 9 cut(s) 75, 78, 159, 229, 238, 241, 308, 311, 362
MflI RGATCY 1 cut(s) 183
MluCI AATT 5 cut(s) 73, 97, 129, 240, 302
MmeI TCCRAC 1 cut(s) 114
MseI TTAA 3 cut(s) 101, 285, 380
MspCI CTTAAG 1 cut(s) 379
MspI CCGG 1 cut(s) 118
MspR9I CCNGG 2 cut(s) 126, 275
MvaI CCWGG 2 cut(s) 126, 275
NcoI CCATGG 1 cut(s) 321
NdeII GATC 3 cut(s) 3, 183, 313
NlaIII CATG 1 cut(s) 325
NlaIV GGNNCC 1 cut(s) 116
PfoI TCCNGGA 2 cut(s) 124, 273
PkrI GCNGC 1 cut(s) 20
Psp6I CCWGG 2 cut(s) 124, 273
PspGI CCWGG 2 cut(s) 124, 273
PspN4I GGNNCC 1 cut(s) 116
PstI CTGCAG 1 cut(s) 347
PsuI RGATCY 1 cut(s) 183
SaqAI TTAA 3 cut(s) 101, 285, 380
SatI GCNGC 1 cut(s) 19
Sau3AI GATC 3 cut(s) 3, 183, 313
ScrFI CCNGG 2 cut(s) 126, 275
SetI ASST 4 cut(s) 166, 179, 295, 359
SfaNI GCATC 1 cut(s) 49
SfcI CTRYAG 1 cut(s) 343
SmlI CTYRAG 1 cut(s) 379
SmoI CTYRAG 1 cut(s) 379
Sse9I AATT 5 cut(s) 73, 97, 129, 240, 302
StyD4I CCNGG 2 cut(s) 124, 273
StyI CCWWGG 1 cut(s) 321
TasI AATT 5 cut(s) 73, 97, 129, 240, 302
Tru1I TTAA 3 cut(s) 101, 285, 380
Tru9I TTAA 3 cut(s) 101, 285, 380
TscAI CASTG 2 cut(s) 210, 352
TseI GCWGC 1 cut(s) 18
TspDTI ATGAA 1 cut(s) 353
TspRI CASTG 2 cut(s) 210, 352
Vha464I CTTAAG 1 cut(s) 379
XapI RAATTY 2 cut(s) 73, 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.