Rorug07G0122600

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000092
Physical Location & Seq
Forward (+)
9556806 .. 9559141
2336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0122600.1

Sequence Viewer

Length: 1842 bp
ATGGCCGCCGCCGCCGCCGAAAATGACGAAAAGACCCTCCAAGAGGAGCTGTCCCTCCCCATCCTCCTCGCGGATCGGGTCCTCAAGTCGGCCCACGAGGCCGAGTCCTCCAAGCCCGAGTGCGCCGACCTGGCCCACCAAGTCGACCGCCTCTCCCAGATGCTCCGATCCGCCGTCCGATTCGCCGCCGCCTCCGCCTCCCTCTACGAGCGCCCCGTCCGACGCATCGCCGCCGACGTGGCGAAGAACCTGGACCGCGCCCTCACCCTCGTCCGCAAGTGCAAGCACAGCGGCGTCCTCCGCCAGGTCTTCTCCATCACCACCACCGCCGACTTCCGCAAGGTGTCCAACCTCCTCGAGTCCTCGATCGGCGACATGAAGTGGCTCCTCTCGGTCTTCGAGTCCGACGGCGCCAACCTCTCGCTGCCGCCCATCGCCAGCAACGACCCGATTCTGAGCTGGGTCTGGTCGTACATCGCCACCATTCAGATGGGCCAGCTCCGGGACCGAGTGGAGGCGGCGAGTTCGCTGGTCTCGCTGGCGAGGGACAACGACCGGAACAAGAAGATAATAGTGGACGAGGGAGGAGTGACGCCGCTGCTCAAGCTTTTGAAAGAGGGGTCTTCGGCGGAGGCACAGATTGCTGCGGCGAATGCTCTGTTTCACATCGCTACGGACCAGGAGAGGGTTCGGACTGTAATCGAGTTGAATGGGATTCCGATGATAGTTTCGGTCTTGGGGGATTCGCCGATGAGGGTTCAGGCGGCGGTGGTGAGATTGGTGGCGGAAATGGCGGAGCTTGACCCGATTGCGCAGGAGGACTTTGCTAGAGAAAATGTGACTAGGCCGTTGGTGTCTCTGTTGGCTATGGATACGGTTTTGGATGAGCCGAAACCGCAGTCGGGTAAGCCCAGCATTCATTCGCTTGTGATTAATAAGGAGTTGGTAGGAAAGGGGGCGAATTCGAGTAGTAGGTTGGGGTCGTTTAGTTCGAATCATTATCATTCTGATGGGAGTAGTAGAGGTGGGCATTATAGGAAAGATAGGGAGAGAGAGGTTGAGAGCCCTGAGGTGAAGCTCAAGCTCAAGGTCGGTTGTGCTGAGGCATTGTGGAAGTTGTGTAGAGATTGTTTGTTGAATAGTCGAAAAGTTACAGAGACTAAAGGGTTGATTTGTTTGGCGAAGATTGTTGAGAAGGAAGTTGGGGAATTGCAGCTTAATTGCTTGATGACTGTGATGGAAATAGCTGCAGTGGCAGAGTCAAATCCAGAGCTTAGACGATCGGCTTTTAAGCCCAACTCTCCGGCTGCAAAGGCAGTTGTCGATCAGCTTATGAGGGTTATTCAAGAAGAGAGTAACCCGGATCTGCAAATACCGGCAATCAAGGCAATTGGGTCACTCGCAAGAACTTTTGCCGCCAGGGAAACCCGGATAGTTGGTCCTTTGGTTGCGCGGCTGGGTAATGAGAATGTGGATGTGGCAACTGAGGCTGCCATTGCATTGGAAAAGTTTGTGTGTTTGGAGAACTTCAACCGAGTAGAGCATTCCAAGACGATAATTGAGTTTGATGGGGTTCCTTCTCTGATGAGATTGTTGAAGGCTACTGATCGGACCAACGAACTTGCTCACATGCACTGCCTAGAACTATTATGTTACCTCGCATTGCACGTAGGCAATAGCAAAGCTCTTGAACAAGCACAGGTGTTGAGTACTCTCGAGGGGGGAGCTCGTTCTGCTGTGGCACAAAATCCAGATTTGAAGGAGTTGTTTTTCAAAGCCATACACCATCTCAGTCTTTATCAGCCTGGAGCTCATCCCCACAGGCAAACCTACATGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

613

Amino Acids

67.19

Weight (kDa)

6.62

Isoelectric Point (pI)

34.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7792 PF25055 14 - 133 1.3e-50 Domain of unknown function (DUF7792)
ARM_PUB PF25598 167 - 447 5e-06 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000092)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21210 AT2G21210 AT3G20220 AT4G34780 AT4G38840
fragaria_vesca FvH4_2g10810 FvH4_2g10820 FvH4_2g10850 FvH4_2g10870 FvH4_3g13730 FvH4_5g22620 FvH4_5g22660 FvH4_5g22690 FvH4_5g22700 FvH4_5g22780 FvH4_5g22790 FvH4_5g22810 FvH4_5g22821 FvH4_5g22822 FvH4_5g24600 FvH4_5g24720
malus_domestica MD05G1051600.v1.1 MD05G1051700.v1.1 MD05G1051800.v1.1 MD05G1052000.v1.1 MD05G1052100.v1.1 MD05G1052200.v1.1 MD05G1052300.v1.1 MD05G1052400.v1.1 MD05G1113300.v1.1 MD10G1059200.v1.1 MD10G1059500.v1.1 MD10G1059600.v1.1 MD10G1059700.v1.1 MD10G1059800.v1.1 MD10G1060100.v1.1 MD10G1060200.v1.1 MD10G1060300.v1.1 MD10G1060400.v1.1 MD10G1060500.v1.1 MD10G1060600.v1.1 MD10G1060700.v1.1 MD10G1060800.v1.1 MD10G1060900.v1.1 MD10G1061000.v1.1 MD10G1061100.v1.1
prunus_persica Prupe.8G078600_v2.0.a1 Prupe.8G078700_v2.0.a1 Prupe.8G078900_v2.0.a1 Prupe.8G079000_v2.0.a1 Prupe.8G079100_v2.0.a1 Prupe.8G079200_v2.0.a1 Prupe.8G079400_v2.0.a1 Prupe.8G079500_v2.0.a1 Prupe.8G079600_v2.0.a1 Prupe.8G079700_v2.0.a1 Prupe.8G079900_v2.0.a1 Prupe.8G080000_v2.0.a1 Prupe.8G080100_v2.0.a1 Prupe.8G080200_v2.0.a1 Prupe.8G080300_v2.0.a1 Prupe.8G080500_v2.0.a1 Prupe.8G080600_v2.0.a1 Prupe.8G080700_v2.0.a1 Prupe.8G080800_v2.0.a1 Prupe.8G081000_v2.0.a1 Prupe.8G081100_v2.0.a1 Prupe.8G081300_v2.0.a1 Prupe.8G081500_v2.0.a1 Prupe.8G081700_v2.0.a1 Prupe.8G157700_v2.0.a1
pyrus_communis pycom05g04350 pycom05g04390 pycom05g04400 pycom05g04410 pycom10g04550 pycom10g04560 pycom10g04570 pycom10g04580 pycom10g04590 pycom10g04600 pycom10g04610 pycom10g04630 pycom10g04640 pycom10g04650 pycom10g04660 pycom10g04680 pycom10g10040
rosa_chinensis RchiOBHm_Chr0c32g0501561 RchiOBHm_Chr2g0124401 RchiOBHm_Chr2g0124451 RchiOBHm_Chr2g0124461 RchiOBHm_Chr2g0124531 RchiOBHm_Chr2g0124561 RchiOBHm_Chr3g0483671 RchiOBHm_Chr3g0483711 RchiOBHm_Chr5g0056801 RchiOBHm_Chr5g0056821 RchiOBHm_Chr5g0056831 RchiOBHm_Chr5g0056841 RchiOBHm_Chr5g0059921 RchiOBHm_Chr6g0268901 RchiOBHm_Chr6g0268941 RchiOBHm_Chr6g0268951 RchiOBHm_Chr6g0268961 RchiOBHm_Chr7g0210461 RchiOBHm_Chr7g0210481 RchiOBHm_Chr7g0210491 RchiOBHm_Chr7g0210511 RchiOBHm_Chr7g0210531 RchiOBHm_Chr7g0210621 RchiOBHm_Chr7g0210641 RchiOBHm_Chr7g0210651 RchiOBHm_Chr7g0210661 RchiOBHm_Chr7g0210711 RchiOBHm_Chr7g0210801 RchiOBHm_Chr7g0210831 RchiOBHm_Chr7g0210851 RchiOBHm_Chr7g0210871 RchiOBHm_Chr7g0210881 RchiOBHm_Chr7g0210891 RchiOBHm_Chr7g0211121 RchiOBHm_Chr7g0211131 RchiOBHm_Chr7g0211151 RchiOBHm_Chr7g0211501 RchiOBHm_Chr7g0211511
rosa_laevigata RLG00000003016 RLG00000003020 RLG00000003021 RLG00000003031 RLG00000003032 RLG00000003033 RLG00000003034 RLG00000003040 RLG00000003041 RLG00000018801 RLG00000035128 RLG00000035129
rosa_multiflora Rmu_co8425977.1_g000001 Rmu_sc0001081.1_g000010 Rmu_sc0001081.1_g000011 Rmu_sc0001303.1_g000001 Rmu_sc0001303.1_g000002 Rmu_sc0001303.1_g000004 Rmu_sc0001303.1_g000007 Rmu_sc0001460.1_g000030 Rmu_sc0001460.1_g000035 Rmu_sc0001460.1_g000041 Rmu_sc0001460.1_g000048 Rmu_sc0002755.1_g000005 Rmu_sc0002755.1_g000011 Rmu_sc0002755.1_g000017 Rmu_sc0002755.1_g000027 Rmu_sc0003765.1_g000020 Rmu_sc0003765.1_g000042 Rmu_sc0003765.1_g000043 Rmu_sc0003765.1_g000048 Rmu_sc0003765.1_g000057 Rmu_sc0003765.1_g000058 Rmu_sc0003807.1_g000013 Rmu_sc0003807.1_g000014 Rmu_sc0003807.1_g000015 Rmu_sc0003807.1_g000018 Rmu_sc0003907.1_g000001 Rmu_sc0005302.1_g000002 Rmu_sc0005302.1_g000003 Rmu_sc0005696.1_g000001 Rmu_sc0005844.1_g000001 Rmu_sc0005844.1_g000002 Rmu_sc0005844.1_g000003 Rmu_sc0008289.1_g000006 Rmu_sc0008289.1_g000008 Rmu_sc0008289.1_g000009 Rmu_sc0008289.1_g000014 Rmu_sc0010535.1_g000012 Rmu_sc0010535.1_g000013 Rmu_sc0010535.1_g000014 Rmu_sc0010535.1_g000015 Rmu_sc0011084.1_g000001 Rmu_sc0011691.1_g000001 Rmu_sc0017239.1_g000001 Rmu_sc0018437.1_g000009 Rmu_sc0018662.1_g000001 Rmu_sc0018662.1_g000003 Rmu_sc0020409.1_g000001 Rmu_sc0024576.1_g000001 Rmu_sc0034951.1_g000001
rosa_roxburghii Rroxscaffold_1G00023480 Rroxscaffold_1G00023490 Rroxscaffold_1G00023570 Rroxscaffold_2G00119860 Rroxscaffold_2G00119910 Rroxscaffold_3G00247990 Rroxscaffold_3G00248000 Rroxscaffold_3G00248010 Rroxscaffold_3G00248060 Rroxscaffold_3G00248070 Rroxscaffold_3G00248090 Rroxscaffold_3G00248100 Rroxscaffold_3G00248210 Rroxscaffold_3G00248230 Rroxscaffold_3G00248240 Rroxscaffold_3G00248270 Rroxscaffold_3G00248290
rosa_rugosa Rorug02G0251000.1 Rorug02G0251100 Rorug02G0251100 Rorug02G0251200 Rorug02G0251300 Rorug05G0302000 Rorug05G0302100 Rorug05G0302400 Rorug05G0302500 Rorug06G0043500 Rorug06G0043600 Rorug06G0043600 Rorug07G0121600 Rorug07G0121700 Rorug07G0121800 Rorug07G0121900 Rorug07G0122300 Rorug07G0122400 Rorug07G0122500 Rorug07G0122600 Rorug07G0122700 Rorug07G0122700 Rorug07G0123100 Rorug07G0123200 Rorug07G0123300 Rorug07G0123600 Rorug07G0123700 Rorug07G0124200 Rorug07G0124300 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124600 Rorug07G0124700
rosa_wichuraiana Rw0G021160 Rw0G021170 Rw2G024970 Rw2G024980 Rw2G025000 Rw2G025020 Rw2G025030 Rw2G025040 Rw2G025050 Rw3G023170 Rw3G023180 Rw5G034930 Rw5G034940 Rw5G034960 Rw5G035050 Rw5G035060 Rw5G035070 Rw6G014100 Rw6G014110 Rw6G014130 Rw6G014140 Rw6G014150 Rw7G021690 Rw7G021700 Rw7G021710 Rw7G021720 Rw7G021740 Rw7G021750 Rw7G021760 Rw7G021770 Rw7G021790 Rw7G021800 Rw7G021810 Rw7G021820 Rw7G021900 Rw7G021910 Rw7G021920 Rw7G021930 Rw7G021940 Rw7G021950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 813
AccB1I GGYRCC 1 cut(s) 410
AccI GTMKAC 1 cut(s) 144
AccII CGCG 3 cut(s) 71, 258, 1453
AclWI GGATC 3 cut(s) 81, 162, 1371
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 961
AcyI GRCGYC 3 cut(s) 294, 411, 593
AfaI GTAC 2 cut(s) 473, 1711
AfiI CCNNNNNNNGG 8 cut(s) 43, 70, 88, 304, 502, 514, 685, 902
AgsI TTSAA 9 cut(s) 613, 709, 1138, 1346, 1531, 1597, 1691, 1759, 1774
AjiI CACGTC 1 cut(s) 238
AjnI CCWGG 6 cut(s) 129, 249, 303, 678, 1418, 1804
Alw21I GWGCWC 2 cut(s) 1729, 1813
Alw26I GTCTC 3 cut(s) 538, 861, 1151
AlwI GGATC 3 cut(s) 81, 162, 1371
Ama87I CYCGRG 3 cut(s) 116, 356, 1715
AoxI GGCC 6 cut(s) 3, 90, 99, 132, 493, 845
ApeKI GCWGC 7 cut(s) 424, 598, 644, 1213, 1247, 1307, 1490
ApoI RAATTY 1 cut(s) 961
ArsI GACNNNNNNTTYG 2 cut(s) 884, 916
AseI ATTAAT 1 cut(s) 933
AspLEI GCGC 6 cut(s) 125, 213, 260, 413, 814, 1453
AspS9I GGNCC 9 cut(s) 79, 91, 133, 253, 493, 505, 676, 1439, 1611
AsuC2I CCSGG 3 cut(s) 503, 1361, 1429
AsuHPI GGTGA 4 cut(s) 256, 310, 784, 1084
AsuII TTCGAA 1 cut(s) 992
AvaI CYCGRG 3 cut(s) 116, 356, 1715
AvaII GGWCC 6 cut(s) 79, 253, 505, 676, 1439, 1611
AxyI CCTNAGG 1 cut(s) 1068
BanI GGYRCC 1 cut(s) 410
BanII GRGCYC 3 cut(s) 1067, 1729, 1813
BauI CACGAG 1 cut(s) 95
BbsI GAAGAC 3 cut(s) 301, 388, 615
Bbv12I GWGCWC 2 cut(s) 1729, 1813
BbvCI CCTCAGC 1 cut(s) 1101
BbvI GCAGC 7 cut(s) 411, 585, 631, 1225, 1234, 1294, 1477
BccI CCATC 8 cut(s) 68, 323, 440, 484, 1004, 1231, 1562, 1794
BceAI ACGGC 3 cut(s) 158, 424, 832
BciT130I CCWGG 6 cut(s) 131, 251, 305, 680, 1420, 1806
BciVI GTATCC 1 cut(s) 865
BcnI CCSGG 3 cut(s) 503, 1361, 1429
BcoDI GTCTC 3 cut(s) 538, 861, 1151
BfaI CTAG 3 cut(s) 828, 843, 1640
BfmI CTRYAG 1 cut(s) 1248
BfoI RGCGCY 2 cut(s) 214, 414
BfuI GTATCC 1 cut(s) 865
BglI GCCNNNNNGGC 3 cut(s) 98, 131, 239
BmcAI AGTACT 1 cut(s) 1711
Bme1390I CCNGG 9 cut(s) 131, 251, 305, 503, 680, 1361, 1420, 1429, 1806
Bme18I GGWCC 6 cut(s) 79, 253, 505, 676, 1439, 1611
BmeT110I CYCGRG 3 cut(s) 116, 356, 1715
BmgBI CACGTC 1 cut(s) 238
BmgT120I GGNCC 9 cut(s) 79, 91, 133, 253, 493, 505, 676, 1439, 1611
BmiI GGNNCC 5 cut(s) 80, 386, 412, 506, 1575
BmrFI CCNGG 9 cut(s) 131, 251, 305, 503, 680, 1361, 1420, 1429, 1806
BmsI GCATC 2 cut(s) 150, 234
BpiI GAAGAC 3 cut(s) 301, 388, 615
BpmI CTGGAG 1 cut(s) 1827
Bpu10I CCTNAGC 1 cut(s) 1101
Bpu14I TTCGAA 1 cut(s) 992
BpuEI CTTGAG 4 cut(s) 68, 587, 1064, 1070
BpuMI CCSGG 3 cut(s) 503, 1361, 1429
BsaAI YACGTR 1 cut(s) 1669
BsaHI GRCGYC 3 cut(s) 294, 411, 593
BsaI GGTCTC 1 cut(s) 538
BsaJI CCNNGG 1 cut(s) 1419
BsaWI WCCGGW 1 cut(s) 555
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bsc4I CCNNNNNNNGG 8 cut(s) 43, 70, 88, 304, 502, 514, 685, 902
Bse118I RCCGGY 1 cut(s) 1375
Bse21I CCTNAGG 1 cut(s) 1068
Bse3DI GCAATG 2 cut(s) 1494, 1661
BseBI CCWGG 6 cut(s) 131, 251, 305, 680, 1420, 1806
BseDI CCNNGG 1 cut(s) 1419
BseGI GGATG 4 cut(s) 60, 889, 1480, 1813
BseLI CCNNNNNNNGG 8 cut(s) 43, 70, 88, 304, 502, 514, 685, 902
BseMI GCAATG 2 cut(s) 1494, 1661
BseMII CTCAG 5 cut(s) 446, 1059, 1092, 1476, 1804
BseRI GAGGAG 5 cut(s) 56, 59, 344, 377, 600
BseXI GCAGC 7 cut(s) 411, 585, 631, 1225, 1234, 1294, 1477
BseYI CCCAGC 3 cut(s) 459, 911, 1456
Bsh1236I CGCG 3 cut(s) 71, 258, 1453
Bsh1285I CGRYCG 4 cut(s) 148, 369, 556, 1283
BshFI GGCC 6 cut(s) 5, 92, 101, 134, 495, 847
BshNI GGYRCC 1 cut(s) 410
BsiEI CGRYCG 4 cut(s) 148, 369, 556, 1283
BsiHKAI GWGCWC 2 cut(s) 1729, 1813
BsiHKCI CYCGRG 3 cut(s) 116, 356, 1715
BsiSI CCGG 6 cut(s) 502, 556, 1304, 1361, 1376, 1429
BslFI GGGAC 3 cut(s) 37, 518, 560
BslI CCNNNNNNNGG 8 cut(s) 43, 70, 88, 304, 502, 514, 685, 902
BsmAI GTCTC 3 cut(s) 538, 861, 1151
BsmFI GGGAC 3 cut(s) 37, 518, 560
BsmI GAATGC 3 cut(s) 658, 915, 1543
BsnI GGCC 6 cut(s) 5, 92, 101, 134, 495, 847
Bso31I GGTCTC 1 cut(s) 538
BsoBI CYCGRG 3 cut(s) 116, 356, 1715
Bsp119I TTCGAA 1 cut(s) 992
Bsp1286I GDGCHC 3 cut(s) 1067, 1729, 1813
Bsp143I GATC 7 cut(s) 73, 167, 366, 1280, 1324, 1363, 1606
BspANI GGCC 6 cut(s) 5, 92, 101, 134, 495, 847
BspCNI CTCAG 5 cut(s) 447, 1060, 1093, 1477, 1803
BspFNI CGCG 3 cut(s) 71, 258, 1453
BspLI GGNNCC 5 cut(s) 80, 386, 412, 506, 1575
BspMAI CTGCAG 1 cut(s) 1252
BspPI GGATC 3 cut(s) 81, 162, 1371
BspT104I TTCGAA 1 cut(s) 992
BspT107I GGYRCC 1 cut(s) 410
BspTNI GGTCTC 1 cut(s) 538
BsrDI GCAATG 2 cut(s) 1494, 1661
BsrFI RCCGGY 1 cut(s) 1375
BssAI RCCGGY 1 cut(s) 1375
BssECI CCNNGG 1 cut(s) 1419
BssMI GATC 7 cut(s) 73, 167, 366, 1280, 1324, 1363, 1606
BssNI GRCGYC 3 cut(s) 294, 411, 593
BssSI CACGAG 1 cut(s) 95
Bst2BI CACGAG 1 cut(s) 95
Bst2UI CCWGG 6 cut(s) 131, 251, 305, 680, 1420, 1806
Bst4CI ACNGT 3 cut(s) 697, 877, 1234
Bst6I CTCTTC 1 cut(s) 1344
BstACI GRCGYC 3 cut(s) 294, 411, 593
BstAPI GCANNNNNTGC 1 cut(s) 641
BstBAI YACGTR 1 cut(s) 1669
BstBI TTCGAA 1 cut(s) 992
BstC8I GCNNGC 4 cut(s) 284, 439, 497, 540
BstDEI CTNAG 6 cut(s) 455, 1068, 1101, 1274, 1485, 1790
BstENI CCTNNNNNAGG 2 cut(s) 41, 302
BstF5I GGATG 4 cut(s) 60, 889, 1480, 1813
BstFNI CGCG 3 cut(s) 71, 258, 1453
BstH2I RGCGCY 2 cut(s) 214, 414
BstHHI GCGC 6 cut(s) 125, 213, 260, 413, 814, 1453
BstKTI GATC 7 cut(s) 76, 170, 369, 1283, 1327, 1366, 1609
BstMAI GTCTC 3 cut(s) 538, 861, 1151
BstMBI GATC 7 cut(s) 73, 167, 366, 1280, 1324, 1363, 1606
BstMCI CGRYCG 4 cut(s) 148, 369, 556, 1283
BstNI CCWGG 6 cut(s) 131, 251, 305, 680, 1420, 1806
BstNSI RCATGY 2 cut(s) 1633, 1837
BstSCI CCNGG 9 cut(s) 129, 249, 303, 501, 678, 1359, 1418, 1427, 1804
BstSFI CTRYAG 1 cut(s) 1248
BstUI CGCG 3 cut(s) 71, 258, 1453
BstV1I GCAGC 7 cut(s) 411, 585, 631, 1225, 1234, 1294, 1477
BstV2I GAAGAC 3 cut(s) 301, 388, 615
BstX2I RGATCY 1 cut(s) 1363
BstXI CCANNNNNNTGG 2 cut(s) 490, 1501
BstYI RGATCY 1 cut(s) 1363
Bsu36I CCTNAGG 1 cut(s) 1068
BsuI GTATCC 1 cut(s) 865
BsuRI GGCC 6 cut(s) 5, 92, 101, 134, 495, 847
BtgZI GCGATG 4 cut(s) 211, 418, 460, 652
BtrI CACGTC 1 cut(s) 238
BtsCI GGATG 4 cut(s) 60, 889, 1480, 1813
BtsI GCAGTG 2 cut(s) 1257, 1633
BtsIMutI CAGTG 2 cut(s) 1257, 1633
Cac8I GCNNGC 4 cut(s) 284, 439, 497, 540
CfoI GCGC 6 cut(s) 125, 213, 260, 413, 814, 1453
Cfr10I RCCGGY 1 cut(s) 1375
Cfr13I GGNCC 9 cut(s) 79, 91, 133, 253, 493, 505, 676, 1439, 1611
CseI GACGC 3 cut(s) 231, 283, 601
Csp6I GTAC 2 cut(s) 472, 1710
CviAII CATG 4 cut(s) 376, 1630, 1834, 1839
CviQI GTAC 2 cut(s) 472, 1710
DdeI CTNAG 6 cut(s) 455, 1068, 1101, 1274, 1485, 1790
DinI GGCGCC 1 cut(s) 412
DpnI GATC 7 cut(s) 75, 169, 368, 1282, 1326, 1365, 1608
DpnII GATC 7 cut(s) 73, 167, 366, 1280, 1324, 1363, 1606
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 1344
EarI CTCTTC 1 cut(s) 1344
EciI GGCGGA 6 cut(s) 160, 184, 290, 644, 800, 809
Ecl136II GAGCTC 2 cut(s) 1727, 1811
Eco24I GRGCYC 3 cut(s) 1067, 1729, 1813
Eco31I GGTCTC 1 cut(s) 538
Eco47I GGWCC 6 cut(s) 79, 253, 505, 676, 1439, 1611
Eco53kI GAGCTC 2 cut(s) 1727, 1811
Eco81I CCTNAGG 1 cut(s) 1068
Eco88I CYCGRG 3 cut(s) 116, 356, 1715
EcoICRI GAGCTC 2 cut(s) 1727, 1811
EcoNI CCTNNNNNAGG 2 cut(s) 41, 302
EcoO109I RGGNCCY 1 cut(s) 79
EcoRI GAATTC 1 cut(s) 961
EcoRII CCWGG 6 cut(s) 129, 249, 303, 678, 1418, 1804
EcoT38I GRGCYC 3 cut(s) 1067, 1729, 1813
EgeI GGCGCC 1 cut(s) 412
EheI GGCGCC 1 cut(s) 412
FaeI CATG 4 cut(s) 379, 1633, 1837, 1842
FaiI YATR 9 cut(s) 377, 869, 1035, 1334, 1631, 1651, 1781, 1835, 1840
FaqI GGGAC 3 cut(s) 37, 518, 560
FatI CATG 4 cut(s) 375, 1629, 1833, 1838
FblI GTMKAC 1 cut(s) 144
FokI GGATG 4 cut(s) 47, 896, 1487, 1800
FriOI GRGCYC 3 cut(s) 1067, 1729, 1813
FspBI CTAG 3 cut(s) 828, 843, 1640
FspI TGCGCA 1 cut(s) 813
GlaI GCGC 6 cut(s) 124, 212, 259, 412, 813, 1452
GsaI CCCAGC 3 cut(s) 463, 915, 1460
GsuI CTGGAG 1 cut(s) 1827
HaeII RGCGCY 2 cut(s) 214, 414
HaeIII GGCC 6 cut(s) 5, 92, 101, 134, 495, 847
HapII CCGG 6 cut(s) 502, 556, 1304, 1361, 1376, 1429
HgaI GACGC 3 cut(s) 231, 283, 601
HhaI GCGC 6 cut(s) 125, 213, 260, 413, 814, 1453
Hin1I GRCGYC 3 cut(s) 294, 411, 593
Hin1II CATG 4 cut(s) 379, 1633, 1837, 1842
Hin6I GCGC 6 cut(s) 123, 211, 258, 411, 812, 1451
HinP1I GCGC 6 cut(s) 123, 211, 258, 411, 812, 1451
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HindIII AAGCTT 1 cut(s) 605
HinfI GANTC 9 cut(s) 104, 180, 359, 401, 451, 715, 743, 994, 1259
HpaII CCGG 6 cut(s) 502, 556, 1304, 1361, 1376, 1429
HphI GGTGA 4 cut(s) 256, 310, 784, 1084
Hpy166II GTNNAC 2 cut(s) 145, 577
Hpy188III TCNNGA 5 cut(s) 1268, 1346, 1688, 1715, 1751
Hpy8I GTNNAC 2 cut(s) 145, 577
Hpy99I CGWCG 3 cut(s) 225, 239, 410
HpyAV CCTTC 4 cut(s) 1189, 1587, 1591, 1753
HpyCH4III ACNGT 3 cut(s) 697, 877, 1234
HpyCH4IV ACGT 2 cut(s) 237, 1668
HpyCH4V TGCA 8 cut(s) 282, 1213, 1250, 1310, 1369, 1499, 1633, 1666
HpyF3I CTNAG 6 cut(s) 455, 1068, 1101, 1274, 1485, 1790
HpySE526I ACGT 2 cut(s) 237, 1668
Hsp92I GRCGYC 3 cut(s) 294, 411, 593
Hsp92II CATG 4 cut(s) 379, 1633, 1837, 1842
HspAI GCGC 6 cut(s) 123, 211, 258, 411, 812, 1451
KasI GGCGCC 1 cut(s) 410
Kzo9I GATC 7 cut(s) 73, 167, 366, 1280, 1324, 1363, 1606
LmnI GCTCC 7 cut(s) 46, 168, 390, 504, 796, 1724, 1808
Lsp1109I GCAGC 7 cut(s) 411, 585, 631, 1225, 1234, 1294, 1477
LweI GCATC 2 cut(s) 150, 234
MaeI CTAG 3 cut(s) 828, 843, 1640
MaeII ACGT 2 cut(s) 237, 1668
MaeIII GTNAC 6 cut(s) 589, 838, 1150, 1355, 1395, 1652
MalI GATC 7 cut(s) 75, 169, 368, 1282, 1326, 1365, 1608
MboI GATC 7 cut(s) 73, 167, 366, 1280, 1324, 1363, 1606
MboII GAAGA 7 cut(s) 256, 301, 388, 577, 615, 1195, 1361
MfeI CAATTG 1 cut(s) 1389
MflI RGATCY 1 cut(s) 1363
MhlI GDGCHC 3 cut(s) 1067, 1729, 1813
MluCI AATT 5 cut(s) 961, 1208, 1219, 1389, 1557
Mly113I GGCGCC 1 cut(s) 411
MlyI GAGTC 4 cut(s) 113, 368, 410, 1268
MmeI TCCRAC 3 cut(s) 244, 372, 429
MseI TTAA 3 cut(s) 933, 1218, 1290
MslI CAYNNNNRTG 2 cut(s) 488, 1008
MspA1I CMGCKG 2 cut(s) 291, 598
MspI CCGG 6 cut(s) 502, 556, 1304, 1361, 1376, 1429
MspR9I CCNGG 9 cut(s) 131, 251, 305, 503, 680, 1361, 1420, 1429, 1806
MunI CAATTG 1 cut(s) 1389
Mva1269I GAATGC 3 cut(s) 658, 915, 1543
MvaI CCWGG 6 cut(s) 131, 251, 305, 680, 1420, 1806
MvnI CGCG 3 cut(s) 71, 258, 1453
NarI GGCGCC 1 cut(s) 411
NciI CCSGG 3 cut(s) 503, 1361, 1429
NdeII GATC 7 cut(s) 73, 167, 366, 1280, 1324, 1363, 1606
NlaIII CATG 4 cut(s) 379, 1633, 1837, 1842
NlaIV GGNNCC 5 cut(s) 80, 386, 412, 506, 1575
NmeAIII GCCGAG 1 cut(s) 127
NmuCI GTSAC 3 cut(s) 589, 838, 1395
NsbI TGCGCA 1 cut(s) 813
NspI RCATGY 2 cut(s) 1633, 1837
NspV TTCGAA 1 cut(s) 992
PaeR7I CTCGAG 2 cut(s) 356, 1715
PcsI WCGNNNNNNNCGW 5 cut(s) 213, 234, 441, 989, 1665
PctI GAATGC 3 cut(s) 658, 915, 1543
PfeI GAWTC 5 cut(s) 180, 451, 715, 743, 994
PfoI TCCNGGA 1 cut(s) 501
Ple19I CGATCG 2 cut(s) 369, 1283
PleI GAGTC 4 cut(s) 112, 367, 409, 1267
PluTI GGCGCC 1 cut(s) 414
PpsI GAGTC 4 cut(s) 112, 367, 409, 1267
Ppu21I YACGTR 1 cut(s) 1669
PpuMI RGGWCCY 1 cut(s) 79
PshBI ATTAAT 1 cut(s) 933
Psp124BI GAGCTC 2 cut(s) 1729, 1813
Psp5II RGGWCCY 1 cut(s) 79
Psp6I CCWGG 6 cut(s) 129, 249, 303, 678, 1418, 1804
PspFI CCCAGC 3 cut(s) 459, 911, 1456
PspGI CCWGG 6 cut(s) 129, 249, 303, 678, 1418, 1804
PspN4I GGNNCC 5 cut(s) 80, 386, 412, 506, 1575
PspPI GGNCC 9 cut(s) 79, 91, 133, 253, 493, 505, 676, 1439, 1611
PspPPI RGGWCCY 1 cut(s) 79
PspXI VCTCGAGB 1 cut(s) 356
PstI CTGCAG 1 cut(s) 1252
PsuI RGATCY 1 cut(s) 1363
PvuI CGATCG 2 cut(s) 369, 1283
RsaI GTAC 2 cut(s) 473, 1711
RsaNI GTAC 2 cut(s) 472, 1710
RseI CAYNNNNRTG 2 cut(s) 488, 1008
SacI GAGCTC 2 cut(s) 1729, 1813
SalI GTCGAC 1 cut(s) 143
SaqAI TTAA 3 cut(s) 933, 1218, 1290
Sau3AI GATC 7 cut(s) 73, 167, 366, 1280, 1324, 1363, 1606
Sau96I GGNCC 9 cut(s) 79, 91, 133, 253, 493, 505, 676, 1439, 1611
ScaI AGTACT 1 cut(s) 1711
SchI GAGTC 4 cut(s) 113, 368, 410, 1268
ScrFI CCNGG 9 cut(s) 131, 251, 305, 503, 680, 1361, 1420, 1429, 1806
SduI GDGCHC 3 cut(s) 1067, 1729, 1813
SfaNI GCATC 2 cut(s) 150, 234
SfcI CTRYAG 1 cut(s) 1248
SfiI GGCCNNNNNGGCC 1 cut(s) 98
SfoI GGCGCC 1 cut(s) 412
Sfr274I CTCGAG 2 cut(s) 356, 1715
SfuI TTCGAA 1 cut(s) 992
SinI GGWCC 6 cut(s) 79, 253, 505, 676, 1439, 1611
SlaI CTCGAG 2 cut(s) 356, 1715
SmiMI CAYNNNNRTG 2 cut(s) 488, 1008
SmlI CTYRAG 6 cut(s) 83, 356, 602, 1079, 1085, 1715
SmoI CTYRAG 6 cut(s) 83, 356, 602, 1079, 1085, 1715
Sse9I AATT 5 cut(s) 961, 1208, 1219, 1389, 1557
SspDI GGCGCC 1 cut(s) 410
SspMI CTAG 3 cut(s) 828, 843, 1640
SstI GAGCTC 2 cut(s) 1729, 1813
StyD4I CCNGG 9 cut(s) 129, 249, 303, 501, 678, 1359, 1418, 1427, 1804
TaaI ACNGT 3 cut(s) 697, 877, 1234
TaiI ACGT 2 cut(s) 240, 1671
TaqII GACCGA 3 cut(s) 382, 522, 721
TasI AATT 5 cut(s) 961, 1208, 1219, 1389, 1557
TatI WGTACW 1 cut(s) 1709
TfiI GAWTC 5 cut(s) 180, 451, 715, 743, 994
Tru1I TTAA 3 cut(s) 933, 1218, 1290
Tru9I TTAA 3 cut(s) 933, 1218, 1290
TscAI CASTG 2 cut(s) 1257, 1640
TseFI GTSAC 3 cut(s) 589, 838, 1395
TseI GCWGC 7 cut(s) 424, 598, 644, 1213, 1247, 1307, 1490
Tsp45I GTSAC 3 cut(s) 589, 838, 1395
TspDTI ATGAA 2 cut(s) 392, 908
TspGWI ACGGA 1 cut(s) 689
TspRI CASTG 2 cut(s) 1257, 1640
VpaK11BI GGWCC 6 cut(s) 79, 253, 505, 676, 1439, 1611
VspI ATTAAT 1 cut(s) 933
XagI CCTNNNNNAGG 2 cut(s) 41, 302
XapI RAATTY 1 cut(s) 961
XceI RCATGY 2 cut(s) 1633, 1837
XcmI CCANNNNNNNNNTGG 1 cut(s) 487
XhoI CTCGAG 2 cut(s) 356, 1715
XmiI GTMKAC 1 cut(s) 144
XspI CTAG 3 cut(s) 828, 843, 1640
ZrmI AGTACT 1 cut(s) 1711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.