Rroxscaffold_3G00248240

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000092
Physical Location & Seq
Forward (+)
41541748 .. 41544888
3141 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00248240.1

Sequence Viewer

Length: 582 bp
ATGGGATTCCGGTTGCCTGGAATTGTTAACACCAAGAAAAGTCTTATTCAACCTCTATCTGCTGCTAAGACATTAGATGTCCCGAAAGGTTATCTCGCAGTCTATGTTGGGAAGAAACAGATGAAGAGATTTGTAATCCCAGTATCATATTTGAACCAACCTCTGTTCCTGGATTTGCTGAGTCAAGCTGAAGAAGAATTTGGATACGATCATCCAATGGGTGGTCTCACAATTCCTTGCAGCGAAGACACCTTCCTTGATCTCACTTCCCGCCTGAAAGCCATGGGTTTCCGGCTGCCTGGAATTGTTAGCCCCAAGAGAAGTCTTACCAGATCTTCATCTAATGCAAACAAGACTGCTTCAAAGACCTTAGATATCCCAAAAGGCTATTTTGCAGTCTATGTCGGAGAGACCCAGAAGAAGCGATTTGTGATTCCAATATCATACTTGAACCAACCTTCATTCATGGATTTGCTGAGTCAAGCTGAAGAAGAATTTGGATACGATCATCCCATGGGCGGTATCACAATCCCTTGCAGTGAAGACACCTTCCTTGATGTCACTTCCAGCTTGAGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

193

Amino Acids

21.35

Weight (kDa)

8.45

Isoelectric Point (pI)

40.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 21 - 91 1.2e-21 Auxin responsive protein
Auxin_inducible PF02519 107 - 191 7.1e-24 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000092)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21210 AT2G21210 AT3G20220 AT4G34780 AT4G38840
fragaria_vesca FvH4_2g10810 FvH4_2g10820 FvH4_2g10850 FvH4_2g10870 FvH4_3g13730 FvH4_5g22620 FvH4_5g22660 FvH4_5g22690 FvH4_5g22700 FvH4_5g22780 FvH4_5g22790 FvH4_5g22810 FvH4_5g22821 FvH4_5g22822 FvH4_5g24600 FvH4_5g24720
malus_domestica MD05G1051600.v1.1 MD05G1051700.v1.1 MD05G1051800.v1.1 MD05G1052000.v1.1 MD05G1052100.v1.1 MD05G1052200.v1.1 MD05G1052300.v1.1 MD05G1052400.v1.1 MD05G1113300.v1.1 MD10G1059200.v1.1 MD10G1059500.v1.1 MD10G1059600.v1.1 MD10G1059700.v1.1 MD10G1059800.v1.1 MD10G1060100.v1.1 MD10G1060200.v1.1 MD10G1060300.v1.1 MD10G1060400.v1.1 MD10G1060500.v1.1 MD10G1060600.v1.1 MD10G1060700.v1.1 MD10G1060800.v1.1 MD10G1060900.v1.1 MD10G1061000.v1.1 MD10G1061100.v1.1
prunus_persica Prupe.8G078600_v2.0.a1 Prupe.8G078700_v2.0.a1 Prupe.8G078900_v2.0.a1 Prupe.8G079000_v2.0.a1 Prupe.8G079100_v2.0.a1 Prupe.8G079200_v2.0.a1 Prupe.8G079400_v2.0.a1 Prupe.8G079500_v2.0.a1 Prupe.8G079600_v2.0.a1 Prupe.8G079700_v2.0.a1 Prupe.8G079900_v2.0.a1 Prupe.8G080000_v2.0.a1 Prupe.8G080100_v2.0.a1 Prupe.8G080200_v2.0.a1 Prupe.8G080300_v2.0.a1 Prupe.8G080500_v2.0.a1 Prupe.8G080600_v2.0.a1 Prupe.8G080700_v2.0.a1 Prupe.8G080800_v2.0.a1 Prupe.8G081000_v2.0.a1 Prupe.8G081100_v2.0.a1 Prupe.8G081300_v2.0.a1 Prupe.8G081500_v2.0.a1 Prupe.8G081700_v2.0.a1 Prupe.8G157700_v2.0.a1
pyrus_communis pycom05g04350 pycom05g04390 pycom05g04400 pycom05g04410 pycom10g04550 pycom10g04560 pycom10g04570 pycom10g04580 pycom10g04590 pycom10g04600 pycom10g04610 pycom10g04630 pycom10g04640 pycom10g04650 pycom10g04660 pycom10g04680 pycom10g10040
rosa_chinensis RchiOBHm_Chr0c32g0501561 RchiOBHm_Chr2g0124401 RchiOBHm_Chr2g0124451 RchiOBHm_Chr2g0124461 RchiOBHm_Chr2g0124531 RchiOBHm_Chr2g0124561 RchiOBHm_Chr3g0483671 RchiOBHm_Chr3g0483711 RchiOBHm_Chr5g0056801 RchiOBHm_Chr5g0056821 RchiOBHm_Chr5g0056831 RchiOBHm_Chr5g0056841 RchiOBHm_Chr5g0059921 RchiOBHm_Chr6g0268901 RchiOBHm_Chr6g0268941 RchiOBHm_Chr6g0268951 RchiOBHm_Chr6g0268961 RchiOBHm_Chr7g0210461 RchiOBHm_Chr7g0210481 RchiOBHm_Chr7g0210491 RchiOBHm_Chr7g0210511 RchiOBHm_Chr7g0210531 RchiOBHm_Chr7g0210621 RchiOBHm_Chr7g0210641 RchiOBHm_Chr7g0210651 RchiOBHm_Chr7g0210661 RchiOBHm_Chr7g0210711 RchiOBHm_Chr7g0210801 RchiOBHm_Chr7g0210831 RchiOBHm_Chr7g0210851 RchiOBHm_Chr7g0210871 RchiOBHm_Chr7g0210881 RchiOBHm_Chr7g0210891 RchiOBHm_Chr7g0211121 RchiOBHm_Chr7g0211131 RchiOBHm_Chr7g0211151 RchiOBHm_Chr7g0211501 RchiOBHm_Chr7g0211511
rosa_laevigata RLG00000003016 RLG00000003020 RLG00000003021 RLG00000003031 RLG00000003032 RLG00000003033 RLG00000003034 RLG00000003040 RLG00000003041 RLG00000018801 RLG00000035128 RLG00000035129
rosa_multiflora Rmu_co8425977.1_g000001 Rmu_sc0001081.1_g000010 Rmu_sc0001081.1_g000011 Rmu_sc0001303.1_g000001 Rmu_sc0001303.1_g000002 Rmu_sc0001303.1_g000004 Rmu_sc0001303.1_g000007 Rmu_sc0001460.1_g000030 Rmu_sc0001460.1_g000035 Rmu_sc0001460.1_g000041 Rmu_sc0001460.1_g000048 Rmu_sc0002755.1_g000005 Rmu_sc0002755.1_g000011 Rmu_sc0002755.1_g000017 Rmu_sc0002755.1_g000027 Rmu_sc0003765.1_g000020 Rmu_sc0003765.1_g000042 Rmu_sc0003765.1_g000043 Rmu_sc0003765.1_g000048 Rmu_sc0003765.1_g000057 Rmu_sc0003765.1_g000058 Rmu_sc0003807.1_g000013 Rmu_sc0003807.1_g000014 Rmu_sc0003807.1_g000015 Rmu_sc0003807.1_g000018 Rmu_sc0003907.1_g000001 Rmu_sc0005302.1_g000002 Rmu_sc0005302.1_g000003 Rmu_sc0005696.1_g000001 Rmu_sc0005844.1_g000001 Rmu_sc0005844.1_g000002 Rmu_sc0005844.1_g000003 Rmu_sc0008289.1_g000006 Rmu_sc0008289.1_g000008 Rmu_sc0008289.1_g000009 Rmu_sc0008289.1_g000014 Rmu_sc0010535.1_g000012 Rmu_sc0010535.1_g000013 Rmu_sc0010535.1_g000014 Rmu_sc0010535.1_g000015 Rmu_sc0011084.1_g000001 Rmu_sc0011691.1_g000001 Rmu_sc0017239.1_g000001 Rmu_sc0018437.1_g000009 Rmu_sc0018662.1_g000001 Rmu_sc0018662.1_g000003 Rmu_sc0020409.1_g000001 Rmu_sc0024576.1_g000001 Rmu_sc0034951.1_g000001
rosa_roxburghii Rroxscaffold_1G00023480 Rroxscaffold_1G00023490 Rroxscaffold_1G00023570 Rroxscaffold_2G00119860 Rroxscaffold_2G00119910 Rroxscaffold_3G00247990 Rroxscaffold_3G00248000 Rroxscaffold_3G00248010 Rroxscaffold_3G00248060 Rroxscaffold_3G00248070 Rroxscaffold_3G00248090 Rroxscaffold_3G00248100 Rroxscaffold_3G00248210 Rroxscaffold_3G00248230 Rroxscaffold_3G00248240 Rroxscaffold_3G00248270 Rroxscaffold_3G00248290
rosa_rugosa Rorug02G0251000.1 Rorug02G0251100 Rorug02G0251100 Rorug02G0251200 Rorug02G0251300 Rorug05G0302000 Rorug05G0302100 Rorug05G0302400 Rorug05G0302500 Rorug06G0043500 Rorug06G0043600 Rorug06G0043600 Rorug07G0121600 Rorug07G0121700 Rorug07G0121800 Rorug07G0121900 Rorug07G0122300 Rorug07G0122400 Rorug07G0122500 Rorug07G0122600 Rorug07G0122700 Rorug07G0122700 Rorug07G0123100 Rorug07G0123200 Rorug07G0123300 Rorug07G0123600 Rorug07G0123700 Rorug07G0124200 Rorug07G0124300 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124600 Rorug07G0124700
rosa_wichuraiana Rw0G021160 Rw0G021170 Rw2G024970 Rw2G024980 Rw2G025000 Rw2G025020 Rw2G025030 Rw2G025040 Rw2G025050 Rw3G023170 Rw3G023180 Rw5G034930 Rw5G034940 Rw5G034960 Rw5G035050 Rw5G035060 Rw5G035070 Rw6G014100 Rw6G014110 Rw6G014130 Rw6G014140 Rw6G014150 Rw7G021690 Rw7G021700 Rw7G021710 Rw7G021720 Rw7G021740 Rw7G021750 Rw7G021760 Rw7G021770 Rw7G021790 Rw7G021800 Rw7G021810 Rw7G021820 Rw7G021900 Rw7G021910 Rw7G021920 Rw7G021930 Rw7G021940 Rw7G021950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 221
AciI CCGC 2 cut(s) 271, 519
AcsI RAATTY 2 cut(s) 197, 494
AcuI CTGAAG 2 cut(s) 210, 507
AfiI CCNNNNNNNGG 2 cut(s) 221, 518
AgsI TTSAA 4 cut(s) 50, 154, 363, 451
AjnI CCWGG 3 cut(s) 16, 168, 298
AjuI GAANNNNNNNTTGG 4 cut(s) 183, 215, 480, 512
AluBI AGCT 3 cut(s) 188, 485, 570
AluI AGCT 3 cut(s) 188, 485, 570
Alw26I GTCTC 2 cut(s) 230, 404
ApeKI GCWGC 3 cut(s) 62, 240, 295
ApoI RAATTY 2 cut(s) 197, 494
BbsI GAAGAC 2 cut(s) 252, 549
BbvI GCAGC 3 cut(s) 49, 252, 282
BciT130I CCWGG 3 cut(s) 18, 170, 300
BciVI GTATCC 2 cut(s) 197, 494
BcoDI GTCTC 2 cut(s) 230, 404
BfuI GTATCC 2 cut(s) 197, 494
BglII AGATCT 1 cut(s) 332
BisI GCNGC 3 cut(s) 63, 241, 296
BlsI GCNGC 3 cut(s) 64, 242, 297
Bme1390I CCNGG 3 cut(s) 18, 170, 300
BmrFI CCNGG 3 cut(s) 18, 170, 300
BmrI ACTGGG 1 cut(s) 134
BmuI ACTGGG 1 cut(s) 134
BpiI GAAGAC 2 cut(s) 252, 549
BsaBI GATNNNNATC 1 cut(s) 337
BsaI GGTCTC 2 cut(s) 230, 404
BsaJI CCNNGG 2 cut(s) 282, 513
BsaWI WCCGGW 1 cut(s) 9
Bsc4I CCNNNNNNNGG 2 cut(s) 221, 518
Bse1I ACTGG 1 cut(s) 140
Bse8I GATNNNNATC 1 cut(s) 337
BseBI CCWGG 3 cut(s) 18, 170, 300
BseDI CCNNGG 2 cut(s) 282, 513
BseGI GGATG 2 cut(s) 211, 508
BseJI GATNNNNATC 1 cut(s) 337
BseLI CCNNNNNNNGG 2 cut(s) 221, 518
BseMII CTCAG 2 cut(s) 170, 467
BseNI ACTGG 1 cut(s) 140
BseXI GCAGC 3 cut(s) 49, 252, 282
BsiSI CCGG 2 cut(s) 10, 292
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 2 cut(s) 221, 518
BsmAI GTCTC 2 cut(s) 230, 404
BsmFI GGGAC 1 cut(s) 65
Bso31I GGTCTC 2 cut(s) 230, 404
Bsp143I GATC 4 cut(s) 208, 259, 332, 505
Bsp19I CCATGG 2 cut(s) 282, 513
BspACI CCGC 2 cut(s) 271, 519
BspCNI CTCAG 2 cut(s) 171, 468
BspTNI GGTCTC 2 cut(s) 230, 404
BsrI ACTGG 1 cut(s) 140
BssECI CCNNGG 2 cut(s) 282, 513
BssMI GATC 4 cut(s) 208, 259, 332, 505
BssT1I CCWWGG 2 cut(s) 282, 513
Bst2UI CCWGG 3 cut(s) 18, 170, 300
Bst6I CTCTTC 1 cut(s) 119
BstDEI CTNAG 4 cut(s) 66, 179, 370, 476
BstDSI CCRYGG 2 cut(s) 282, 513
BstF5I GGATG 2 cut(s) 211, 508
BstKTI GATC 4 cut(s) 211, 262, 335, 508
BstMAI GTCTC 2 cut(s) 230, 404
BstMBI GATC 4 cut(s) 208, 259, 332, 505
BstNI CCWGG 3 cut(s) 18, 170, 300
BstSCI CCNGG 3 cut(s) 16, 168, 298
BstV1I GCAGC 3 cut(s) 49, 252, 282
BstV2I GAAGAC 2 cut(s) 252, 549
BstX2I RGATCY 1 cut(s) 332
BstYI RGATCY 1 cut(s) 332
BsuI GTATCC 2 cut(s) 197, 494
BtgI CCRYGG 2 cut(s) 282, 513
BtsCI GGATG 2 cut(s) 211, 508
BtsI GCAGTG 1 cut(s) 544
BtsIMutI CAGTG 1 cut(s) 544
CviAII CATG 3 cut(s) 283, 466, 514
CviJI RGCY 7 cut(s) 188, 281, 295, 312, 387, 485, 570
CviKI_1 RGCY 7 cut(s) 188, 281, 295, 312, 387, 485, 570
DdeI CTNAG 4 cut(s) 66, 179, 370, 476
DpnI GATC 4 cut(s) 210, 261, 334, 507
DpnII GATC 4 cut(s) 208, 259, 332, 505
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
Eco130I CCWWGG 2 cut(s) 282, 513
Eco31I GGTCTC 2 cut(s) 230, 404
Eco32I GATATC 1 cut(s) 376
Eco57I CTGAAG 2 cut(s) 210, 507
EcoRII CCWGG 3 cut(s) 16, 168, 298
EcoRV GATATC 1 cut(s) 376
EcoT14I CCWWGG 2 cut(s) 282, 513
ErhI CCWWGG 2 cut(s) 282, 513
FaeI CATG 3 cut(s) 286, 469, 517
FaiI YATR 7 cut(s) 105, 148, 284, 402, 445, 467, 515
FaqI GGGAC 1 cut(s) 65
FatI CATG 3 cut(s) 282, 465, 513
FauI CCCGC 1 cut(s) 278
Fnu4HI GCNGC 3 cut(s) 63, 241, 296
FokI GGATG 2 cut(s) 198, 495
Fsp4HI GCNGC 3 cut(s) 63, 241, 296
GluI GCNGC 3 cut(s) 63, 241, 296
HapII CCGG 2 cut(s) 10, 292
Hin1II CATG 3 cut(s) 286, 469, 517
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HinfI GANTC 4 cut(s) 6, 181, 433, 478
HpaI GTTAAC 1 cut(s) 28
HpaII CCGG 2 cut(s) 10, 292
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 1 cut(s) 407
Hpy188III TCNNGA 1 cut(s) 82
Hpy8I GTNNAC 1 cut(s) 28
HpyAV CCTTC 3 cut(s) 262, 468, 559
HpyCH4V TGCA 4 cut(s) 240, 347, 395, 537
HpyF3I CTNAG 4 cut(s) 66, 179, 370, 476
Hsp92II CATG 3 cut(s) 286, 469, 517
KspAI GTTAAC 1 cut(s) 28
Kzo9I GATC 4 cut(s) 208, 259, 332, 505
Lsp1109I GCAGC 3 cut(s) 49, 252, 282
MaeIII GTNAC 1 cut(s) 559
MalI GATC 4 cut(s) 210, 261, 334, 507
MboI GATC 4 cut(s) 208, 259, 332, 505
MflI RGATCY 1 cut(s) 332
MluCI AATT 5 cut(s) 21, 197, 231, 303, 494
MlyI GAGTC 2 cut(s) 190, 487
MmeI TCCRAC 1 cut(s) 385
MnlI CCTC 2 cut(s) 63, 171
MseI TTAA 1 cut(s) 27
MspI CCGG 2 cut(s) 10, 292
MspR9I CCNGG 3 cut(s) 18, 170, 300
MvaI CCWGG 3 cut(s) 18, 170, 300
NcoI CCATGG 2 cut(s) 282, 513
NdeII GATC 4 cut(s) 208, 259, 332, 505
NlaIII CATG 3 cut(s) 286, 469, 517
NmuCI GTSAC 1 cut(s) 559
PfeI GAWTC 2 cut(s) 6, 433
PflMI CCANNNNNTGG 1 cut(s) 221
PfoI TCCNGGA 1 cut(s) 168
PkrI GCNGC 3 cut(s) 64, 242, 297
PleI GAGTC 2 cut(s) 189, 486
PpsI GAGTC 2 cut(s) 189, 486
Psp6I CCWGG 3 cut(s) 16, 168, 298
PspGI CCWGG 3 cut(s) 16, 168, 298
PsuI RGATCY 1 cut(s) 332
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 3 cut(s) 63, 241, 296
Sau3AI GATC 4 cut(s) 208, 259, 332, 505
SchI GAGTC 2 cut(s) 190, 487
ScrFI CCNGG 3 cut(s) 18, 170, 300
SmlI CTYRAG 1 cut(s) 571
SmoI CTYRAG 1 cut(s) 571
Sse9I AATT 5 cut(s) 21, 197, 231, 303, 494
SsiI CCGC 2 cut(s) 271, 519
StyD4I CCNGG 3 cut(s) 16, 168, 298
StyI CCWWGG 2 cut(s) 282, 513
TasI AATT 5 cut(s) 21, 197, 231, 303, 494
TfiI GAWTC 2 cut(s) 6, 433
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TscAI CASTG 1 cut(s) 544
TseFI GTSAC 1 cut(s) 559
TseI GCWGC 3 cut(s) 62, 240, 295
Tsp45I GTSAC 1 cut(s) 559
TspDTI ATGAA 4 cut(s) 137, 327, 450, 454
TspRI CASTG 1 cut(s) 544
Van91I CCANNNNNTGG 1 cut(s) 221
XapI RAATTY 2 cut(s) 197, 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.