Rorug07G0122300

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000092
Physical Location & Seq
Forward (+)
9545364 .. 9551771
6408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0122300.1

Sequence Viewer

Length: 2355 bp
ATGGCCTCAGCTTCGAAAAAAGCGACGCCTTCATGTTGCTCCGATTCTTCTTCTTCCATCATTCCTCGCCAGGCCGCGGCGCCTCCATCGAACGCCGTCGTTTCGGCCGCCGTGGCTCAGGATTGGAGCGTCGCGGCTACCGAGGACCGCCGCGACGATCAGCGCTCCAAGAAGATCGCCATGGCGTCCTTGATTCCTGAACCTTCCGCCAAGAATGCCTCCGCCGCAGGCATCCCGATCATGCTTAGGCCTCAATCAAGGCATCCATTGGAACCTTTATCTGCTGCCGAAATTTCTGTGGCAGTGGCGACTGTCAGGGCAGCTGGAGCAACACCTGAGGTTAGAGATAGTATGCGTTTTGTTGAAGTGGTTCTTCTAGAACCAGAAAAACATGTCGTTGCATTAGCAGATGCATACTTCTTCCCTCCTTTCCAACCCTCATTACTTCCGAGAACCAAAGGTGGACCTATAATACCCACTAAGCTTCCTCCGAGGCGAGCTAGACTTGTTGTTTACAACAAGAAGTCAAATGAGACAAGCACATGGATTGTTGAGCTGTCAGAAGTACATGCAGCTACTCGTGGTGGACATCACAGAGGAAAAGTAATATCATCACAAGTTATCCCTGATGTTCAGCCTCCCATGGATGCTGTGGAATACGCTGAATGTGAAGCTGTTGTGAAAGACTTTCCTCCATTTAGAGATGCTATGAAGAAGAGGGGTGTTGAAGATATGGATCTCGTGATGGTTGATGCCTGGTGTGTTGGTTATCATAGTGAGGCTGATGCTCCTAGCAAAAGACTTGCTAAACCACTGATATTCTGTAGAACTGAGAGTGACTGCCCAATGGAAAATGGTTACGCACGCCCTGTTGAGGGAATCCATATACTTGTTGATATGCAAAGCATGGTGGTGATAGAGTTTGAAGACCGTAAGCTGGTTCCCCTACCTCCAGCCGATCCATTGAGGAACTATACTTCTGGTGAAACAAGAGGTGGTGTTGATCGGAGTGATGTGAAGCCTTTACAAATTGTTCAGGCTGAAGGTCCAAGCTTTCGTGTTGATGGATATTTTGTGGAGTGGCAGAAGTGGAATTTTCGTATTGGATTCACTCCCAGGGAGGGGCTAGTTATATATTCAATTGCGTATGTTGATGGTAGTCGGGGACGAAGGCCTGTAGCCCATAGGTTGAGTTTTGTGGAAATGGTGGTGCCATATGGAGATCCCAATGATCCACATTACAGAAAAAATGCTTTTGATGCTGGGGAAGATGGCCTTGGTAAAAATGCACATTCCCTAAAGAAGGGGTGTGATTGTTTGGGCTATATCAAATACTTTGATGCCCATTTTACAAACTTTACTGGAGGTGTTGAGACAATTGAGAATTGTGTATGTTTGCACGAAGAGGACCATGGACTTCTGTGGAAGCACCAGGACTGGAGAACAGGTTTAGCAGAAGTGCGCAGGTCAAGACGGCTGACAGTTTCTTTTATATGTACTGTGGCTAATTATGAATATGGATTCTTCTGGCACTTTTATCAGGATGGAAAGATTGAAGCTGAAGTTAAACTTACTGGAATACTCAGCTTAGGAGCACTACAACCTGGAGAAGTCCGAAAATATGGTACTGTTATTGCACCGGGGCTATATGCACCAGTTCATCAGCACTTTTTTGTTGCTCGTATGGATATGGCTGTTGATTGCAAACCTGGGGAAACATACAATCAGGTCGTGGAGCTAGATGTTAAAGTTGAACAACCTGGAGACAATAATGTCCACAGCAATGCATTTTATGCTGAAGAGAGACTTCTTAGAACTGAATCGGAGGCAATGCGAGACTGTAATCCCTTGTCTGCCCGCCATTGGATTGTAAGGAACACACGAACTGTTAACAGAACTGGACAGTTAACAGGCTACAAGCTTGTACCTGGTTCAAATTGTTTGCCATTAGCTGGTTCTGAGGCCAAGTTTTTGAGAAGAGCTGCTTTCTTGAAACATAATCTTTGGGTTACACCATATGCACGTGATGAGATGTTTCCTGGAGGAGAATTTCCCAACCAAAACCCACGGGTCAGTGAAGGATTGGCTACATGGGTTCAGCAGAATCGATCTCTTGAAGAAACTGACATTGTCCTTTGGTACGTATTTGGGATAACTCACGTTCCTCGGTTAGAAGACTGGCCTGTCATGCCAGTGGAGCGCATTGGCTTTGTGCTTATGCCTCATGGATTCTTCAACTGCTCTCCTGCAGTGGATGTTCCTCCCAGTGTCTGTGAATTGGAAGTCAAAGAAAATGATGTCAAAGACAATGGAGTTGCCAAGCCAATTCAGACTGGGTTGATGGCAAAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

784

Amino Acids

87.32

Weight (kDa)

6.37

Isoelectric Point (pI)

43.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_amine_oxidN3 PF02728 213 - 316 8.1e-28 Copper amine oxidase, N3 domain
Cu_amine_oxid PF01179 342 - 750 7.2e-153 Copper amine oxidase, enzyme domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000092)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21210 AT2G21210 AT3G20220 AT4G34780 AT4G38840
fragaria_vesca FvH4_2g10810 FvH4_2g10820 FvH4_2g10850 FvH4_2g10870 FvH4_3g13730 FvH4_5g22620 FvH4_5g22660 FvH4_5g22690 FvH4_5g22700 FvH4_5g22780 FvH4_5g22790 FvH4_5g22810 FvH4_5g22821 FvH4_5g22822 FvH4_5g24600 FvH4_5g24720
malus_domestica MD05G1051600.v1.1 MD05G1051700.v1.1 MD05G1051800.v1.1 MD05G1052000.v1.1 MD05G1052100.v1.1 MD05G1052200.v1.1 MD05G1052300.v1.1 MD05G1052400.v1.1 MD05G1113300.v1.1 MD10G1059200.v1.1 MD10G1059500.v1.1 MD10G1059600.v1.1 MD10G1059700.v1.1 MD10G1059800.v1.1 MD10G1060100.v1.1 MD10G1060200.v1.1 MD10G1060300.v1.1 MD10G1060400.v1.1 MD10G1060500.v1.1 MD10G1060600.v1.1 MD10G1060700.v1.1 MD10G1060800.v1.1 MD10G1060900.v1.1 MD10G1061000.v1.1 MD10G1061100.v1.1
prunus_persica Prupe.8G078600_v2.0.a1 Prupe.8G078700_v2.0.a1 Prupe.8G078900_v2.0.a1 Prupe.8G079000_v2.0.a1 Prupe.8G079100_v2.0.a1 Prupe.8G079200_v2.0.a1 Prupe.8G079400_v2.0.a1 Prupe.8G079500_v2.0.a1 Prupe.8G079600_v2.0.a1 Prupe.8G079700_v2.0.a1 Prupe.8G079900_v2.0.a1 Prupe.8G080000_v2.0.a1 Prupe.8G080100_v2.0.a1 Prupe.8G080200_v2.0.a1 Prupe.8G080300_v2.0.a1 Prupe.8G080500_v2.0.a1 Prupe.8G080600_v2.0.a1 Prupe.8G080700_v2.0.a1 Prupe.8G080800_v2.0.a1 Prupe.8G081000_v2.0.a1 Prupe.8G081100_v2.0.a1 Prupe.8G081300_v2.0.a1 Prupe.8G081500_v2.0.a1 Prupe.8G081700_v2.0.a1 Prupe.8G157700_v2.0.a1
pyrus_communis pycom05g04350 pycom05g04390 pycom05g04400 pycom05g04410 pycom10g04550 pycom10g04560 pycom10g04570 pycom10g04580 pycom10g04590 pycom10g04600 pycom10g04610 pycom10g04630 pycom10g04640 pycom10g04650 pycom10g04660 pycom10g04680 pycom10g10040
rosa_chinensis RchiOBHm_Chr0c32g0501561 RchiOBHm_Chr2g0124401 RchiOBHm_Chr2g0124451 RchiOBHm_Chr2g0124461 RchiOBHm_Chr2g0124531 RchiOBHm_Chr2g0124561 RchiOBHm_Chr3g0483671 RchiOBHm_Chr3g0483711 RchiOBHm_Chr5g0056801 RchiOBHm_Chr5g0056821 RchiOBHm_Chr5g0056831 RchiOBHm_Chr5g0056841 RchiOBHm_Chr5g0059921 RchiOBHm_Chr6g0268901 RchiOBHm_Chr6g0268941 RchiOBHm_Chr6g0268951 RchiOBHm_Chr6g0268961 RchiOBHm_Chr7g0210461 RchiOBHm_Chr7g0210481 RchiOBHm_Chr7g0210491 RchiOBHm_Chr7g0210511 RchiOBHm_Chr7g0210531 RchiOBHm_Chr7g0210621 RchiOBHm_Chr7g0210641 RchiOBHm_Chr7g0210651 RchiOBHm_Chr7g0210661 RchiOBHm_Chr7g0210711 RchiOBHm_Chr7g0210801 RchiOBHm_Chr7g0210831 RchiOBHm_Chr7g0210851 RchiOBHm_Chr7g0210871 RchiOBHm_Chr7g0210881 RchiOBHm_Chr7g0210891 RchiOBHm_Chr7g0211121 RchiOBHm_Chr7g0211131 RchiOBHm_Chr7g0211151 RchiOBHm_Chr7g0211501 RchiOBHm_Chr7g0211511
rosa_laevigata RLG00000003016 RLG00000003020 RLG00000003021 RLG00000003031 RLG00000003032 RLG00000003033 RLG00000003034 RLG00000003040 RLG00000003041 RLG00000018801 RLG00000035128 RLG00000035129
rosa_multiflora Rmu_co8425977.1_g000001 Rmu_sc0001081.1_g000010 Rmu_sc0001081.1_g000011 Rmu_sc0001303.1_g000001 Rmu_sc0001303.1_g000002 Rmu_sc0001303.1_g000004 Rmu_sc0001303.1_g000007 Rmu_sc0001460.1_g000030 Rmu_sc0001460.1_g000035 Rmu_sc0001460.1_g000041 Rmu_sc0001460.1_g000048 Rmu_sc0002755.1_g000005 Rmu_sc0002755.1_g000011 Rmu_sc0002755.1_g000017 Rmu_sc0002755.1_g000027 Rmu_sc0003765.1_g000020 Rmu_sc0003765.1_g000042 Rmu_sc0003765.1_g000043 Rmu_sc0003765.1_g000048 Rmu_sc0003765.1_g000057 Rmu_sc0003765.1_g000058 Rmu_sc0003807.1_g000013 Rmu_sc0003807.1_g000014 Rmu_sc0003807.1_g000015 Rmu_sc0003807.1_g000018 Rmu_sc0003907.1_g000001 Rmu_sc0005302.1_g000002 Rmu_sc0005302.1_g000003 Rmu_sc0005696.1_g000001 Rmu_sc0005844.1_g000001 Rmu_sc0005844.1_g000002 Rmu_sc0005844.1_g000003 Rmu_sc0008289.1_g000006 Rmu_sc0008289.1_g000008 Rmu_sc0008289.1_g000009 Rmu_sc0008289.1_g000014 Rmu_sc0010535.1_g000012 Rmu_sc0010535.1_g000013 Rmu_sc0010535.1_g000014 Rmu_sc0010535.1_g000015 Rmu_sc0011084.1_g000001 Rmu_sc0011691.1_g000001 Rmu_sc0017239.1_g000001 Rmu_sc0018437.1_g000009 Rmu_sc0018662.1_g000001 Rmu_sc0018662.1_g000003 Rmu_sc0020409.1_g000001 Rmu_sc0024576.1_g000001 Rmu_sc0034951.1_g000001
rosa_roxburghii Rroxscaffold_1G00023480 Rroxscaffold_1G00023490 Rroxscaffold_1G00023570 Rroxscaffold_2G00119860 Rroxscaffold_2G00119910 Rroxscaffold_3G00247990 Rroxscaffold_3G00248000 Rroxscaffold_3G00248010 Rroxscaffold_3G00248060 Rroxscaffold_3G00248070 Rroxscaffold_3G00248090 Rroxscaffold_3G00248100 Rroxscaffold_3G00248210 Rroxscaffold_3G00248230 Rroxscaffold_3G00248240 Rroxscaffold_3G00248270 Rroxscaffold_3G00248290
rosa_rugosa Rorug02G0251000.1 Rorug02G0251100 Rorug02G0251100 Rorug02G0251200 Rorug02G0251300 Rorug05G0302000 Rorug05G0302100 Rorug05G0302400 Rorug05G0302500 Rorug06G0043500 Rorug06G0043600 Rorug06G0043600 Rorug07G0121600 Rorug07G0121700 Rorug07G0121800 Rorug07G0121900 Rorug07G0122300 Rorug07G0122400 Rorug07G0122500 Rorug07G0122600 Rorug07G0122700 Rorug07G0122700 Rorug07G0123100 Rorug07G0123200 Rorug07G0123300 Rorug07G0123600 Rorug07G0123700 Rorug07G0124200 Rorug07G0124300 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124600 Rorug07G0124700
rosa_wichuraiana Rw0G021160 Rw0G021170 Rw2G024970 Rw2G024980 Rw2G025000 Rw2G025020 Rw2G025030 Rw2G025040 Rw2G025050 Rw3G023170 Rw3G023180 Rw5G034930 Rw5G034940 Rw5G034960 Rw5G035050 Rw5G035060 Rw5G035070 Rw6G014100 Rw6G014110 Rw6G014130 Rw6G014140 Rw6G014150 Rw7G021690 Rw7G021700 Rw7G021710 Rw7G021720 Rw7G021740 Rw7G021750 Rw7G021760 Rw7G021770 Rw7G021790 Rw7G021800 Rw7G021810 Rw7G021820 Rw7G021900 Rw7G021910 Rw7G021920 Rw7G021930 Rw7G021940 Rw7G021950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1772, 2183
Acc16I TGCGCA 1 cut(s) 1463
Acc36I ACCTGC 1 cut(s) 1455
AccB1I GGYRCC 2 cut(s) 79, 1210
AccB7I CCANNNNNTGG 1 cut(s) 1952
AccII CGCG 3 cut(s) 77, 134, 153
AclWI GGATC 4 cut(s) 744, 953, 1217, 1226
AcoI YGGCCR 1 cut(s) 105
AcsI RAATTY 3 cut(s) 291, 1093, 2048
AcuI CTGAAG 3 cut(s) 1062, 1581, 1818
AcvI CACGTG 1 cut(s) 2024
AcyI GRCGYC 3 cut(s) 26, 80, 185
AfaI GTAC 5 cut(s) 567, 1498, 1627, 1926, 2141
AfeI AGCGCT 1 cut(s) 164
AfiI CCNNNNNNNGG 9 cut(s) 76, 874, 875, 937, 1121, 1122, 1303, 1863, 1952
AflIII ACRYGT 1 cut(s) 391
AjnI CCWGG 9 cut(s) 69, 755, 1115, 1431, 1603, 1708, 1759, 1927, 2038
AjuI GAANNNNNNNTTGG 2 cut(s) 1260, 1292
Alw21I GWGCWC 1 cut(s) 1597
Alw26I GTCTC 5 cut(s) 527, 1367, 1758, 1798, 1830
AlwI GGATC 4 cut(s) 744, 953, 1217, 1226
AlwNI CAGNNNCTG 1 cut(s) 2271
Aor51HI AGCGCT 1 cut(s) 164
AoxI GGCC 8 cut(s) 3, 72, 105, 248, 1172, 1273, 1962, 2180
ApeKI GCWGC 4 cut(s) 284, 320, 572, 1982
ApoI RAATTY 3 cut(s) 291, 1093, 2048
Asp700I GAANNNNTTC 1 cut(s) 369
AspLEI GCGC 4 cut(s) 82, 165, 1464, 2202
AspS9I GGNCC 4 cut(s) 145, 464, 1046, 1408
AsuC2I CCSGG 1 cut(s) 1641
AsuHPI GGTGA 2 cut(s) 925, 995
AsuII TTCGAA 1 cut(s) 14
AvaII GGWCC 4 cut(s) 145, 464, 1046, 1408
AxyI CCTNAGG 1 cut(s) 336
BanI GGYRCC 2 cut(s) 79, 1210
BauI CACGAG 2 cut(s) 579, 740
BbrPI CACGTG 1 cut(s) 2024
BbsI GAAGAC 2 cut(s) 933, 2181
Bbv12I GWGCWC 1 cut(s) 1597
BbvCI CCTCAGC 1 cut(s) 7
BbvI GCAGC 4 cut(s) 271, 332, 584, 1969
BccI CCATC 8 cut(s) 65, 94, 739, 1058, 1148, 1265, 1538, 2335
BceAI ACGGC 3 cut(s) 80, 95, 1490
BciT130I CCWGG 9 cut(s) 71, 757, 1117, 1433, 1605, 1710, 1761, 1929, 2040
BcnI CCSGG 1 cut(s) 1641
BcoDI GTCTC 5 cut(s) 527, 1367, 1758, 1798, 1830
BfaI CTAG 5 cut(s) 377, 501, 792, 1127, 1739
BfmI CTRYAG 3 cut(s) 823, 1176, 2247
BfoI RGCGCY 2 cut(s) 83, 166
BfuAI ACCTGC 1 cut(s) 1455
BglI GCCNNNNNGGC 1 cut(s) 113
Bme18I GGWCC 4 cut(s) 145, 464, 1046, 1408
BmgT120I GGNCC 4 cut(s) 145, 464, 1046, 1408
BmiI GGNNCC 4 cut(s) 81, 273, 942, 1212
BmrI ACTGGG 2 cut(s) 2259, 2343
BmsI GCATC 9 cut(s) 240, 271, 400, 637, 694, 742, 775, 1249, 1330
BmuI ACTGGG 2 cut(s) 2259, 2343
BpiI GAAGAC 2 cut(s) 933, 2181
BpmI CTGGAG 7 cut(s) 345, 936, 1383, 1459, 1626, 1782, 2061
Bpu10I CCTNAGC 4 cut(s) 7, 117, 245, 1588
Bpu14I TTCGAA 1 cut(s) 14
BpuMI CCSGG 1 cut(s) 1641
Bsa29I ATCGAT 1 cut(s) 2107
BsaAI YACGTR 2 cut(s) 2024, 2143
BsaBI GATNNNNATC 1 cut(s) 735
BsaHI GRCGYC 3 cut(s) 26, 80, 185
BsaXI ACNNNNNCTCC 2 cut(s) 1432, 1462
Bsc4I CCNNNNNNNGG 9 cut(s) 76, 874, 875, 937, 1121, 1122, 1303, 1863, 1952
Bse1I ACTGG 9 cut(s) 1366, 1442, 1579, 1655, 1903, 2183, 2192, 2265, 2338
Bse21I CCTNAGG 1 cut(s) 336
Bse3DI GCAATG 2 cut(s) 1789, 1836
Bse8I GATNNNNATC 1 cut(s) 735
BseBI CCWGG 9 cut(s) 71, 757, 1117, 1433, 1605, 1710, 1761, 1929, 2040
BseCI ATCGAT 1 cut(s) 2107
BseGI GGATG 5 cut(s) 231, 262, 652, 1549, 2260
BseJI GATNNNNATC 1 cut(s) 735
BseLI CCNNNNNNNGG 9 cut(s) 76, 874, 875, 937, 1121, 1122, 1303, 1863, 1952
BseMI GCAATG 2 cut(s) 1789, 1836
BseMII CTCAG 6 cut(s) 21, 131, 327, 822, 1597, 1950
BseNI ACTGG 9 cut(s) 1366, 1442, 1579, 1655, 1903, 2183, 2192, 2265, 2338
BseRI GAGGAG 1 cut(s) 2058
BseX3I CGGCCG 1 cut(s) 105
BseXI GCAGC 4 cut(s) 271, 332, 584, 1969
BseYI CCCAGC 1 cut(s) 1262
Bsh1236I CGCG 3 cut(s) 77, 134, 153
Bsh1285I CGRYCG 1 cut(s) 108
BshFI GGCC 8 cut(s) 5, 74, 107, 250, 1174, 1275, 1964, 2182
BshNI GGYRCC 2 cut(s) 79, 1210
BshVI ATCGAT 1 cut(s) 2107
BsiEI CGRYCG 1 cut(s) 108
BsiHKAI GWGCWC 1 cut(s) 1597
BsiSI CCGG 1 cut(s) 1640
BslFI GGGAC 1 cut(s) 1179
BslI CCNNNNNNNGG 9 cut(s) 76, 874, 875, 937, 1121, 1122, 1303, 1863, 1952
BsmAI GTCTC 5 cut(s) 527, 1367, 1758, 1798, 1830
BsmFI GGGAC 1 cut(s) 1179
BsmI GAATGC 1 cut(s) 220
BsnI GGCC 8 cut(s) 5, 74, 107, 250, 1174, 1275, 1964, 2182
Bsp119I TTCGAA 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 1597
Bsp143I GATC 9 cut(s) 157, 174, 237, 736, 958, 1003, 1222, 1231, 2108
Bsp19I CCATGG 3 cut(s) 180, 642, 1411
BspANI GGCC 8 cut(s) 5, 74, 107, 250, 1174, 1275, 1964, 2182
BspCNI CTCAG 6 cut(s) 20, 130, 328, 823, 1596, 1951
BspDI ATCGAT 1 cut(s) 2107
BspFNI CGCG 3 cut(s) 77, 134, 153
BspLI GGNNCC 4 cut(s) 81, 273, 942, 1212
BspMAI CTGCAG 1 cut(s) 2251
BspMI ACCTGC 1 cut(s) 1455
BspPI GGATC 4 cut(s) 744, 953, 1217, 1226
BspQI GCTCTTC 1 cut(s) 1972
BspT104I TTCGAA 1 cut(s) 14
BspT107I GGYRCC 2 cut(s) 79, 1210
BsrDI GCAATG 2 cut(s) 1789, 1836
BsrI ACTGG 9 cut(s) 1366, 1442, 1579, 1655, 1903, 2183, 2192, 2265, 2338
BssMI GATC 9 cut(s) 157, 174, 237, 736, 958, 1003, 1222, 1231, 2108
BssNI GRCGYC 3 cut(s) 26, 80, 185
BssSI CACGAG 2 cut(s) 579, 740
BssT1I CCWWGG 4 cut(s) 180, 642, 1276, 1411
Bst2BI CACGAG 2 cut(s) 579, 740
Bst2UI CCWGG 9 cut(s) 71, 757, 1117, 1433, 1605, 1710, 1761, 1929, 2040
Bst4CI ACNGT 8 cut(s) 313, 932, 1483, 1501, 1630, 1841, 1888, 1905
Bst6I CTCTTC 4 cut(s) 710, 1398, 1794, 1972
BstACI GRCGYC 3 cut(s) 26, 80, 185
BstAPI GCANNNNNTGC 1 cut(s) 1793
BstBAI YACGTR 2 cut(s) 2024, 2143
BstBI TTCGAA 1 cut(s) 14
BstC8I GCNNGC 4 cut(s) 229, 498, 865, 1858
BstDSI CCRYGG 6 cut(s) 75, 111, 180, 642, 1411, 2066
BstENI CCTNNNNNAGG 1 cut(s) 1301
BstF5I GGATG 5 cut(s) 231, 262, 652, 1549, 2260
BstFNI CGCG 3 cut(s) 77, 134, 153
BstH2I RGCGCY 2 cut(s) 83, 166
BstHHI GCGC 4 cut(s) 82, 165, 1464, 2202
BstKTI GATC 9 cut(s) 160, 177, 240, 739, 961, 1006, 1225, 1234, 2111
BstMAI GTCTC 5 cut(s) 527, 1367, 1758, 1798, 1830
BstMBI GATC 9 cut(s) 157, 174, 237, 736, 958, 1003, 1222, 1231, 2108
BstMCI CGRYCG 1 cut(s) 108
BstMWI GCNNNNNNNGC 8 cut(s) 113, 215, 224, 326, 1259, 1793, 2188, 2197
BstNI CCWGG 9 cut(s) 71, 757, 1117, 1433, 1605, 1710, 1761, 1929, 2040
BstNSI RCATGY 2 cut(s) 395, 572
BstSFI CTRYAG 3 cut(s) 823, 1176, 2247
BstSNI TACGTA 1 cut(s) 2143
BstUI CGCG 3 cut(s) 77, 134, 153
BstV1I GCAGC 4 cut(s) 271, 332, 584, 1969
BstV2I GAAGAC 2 cut(s) 933, 2181
BstX2I RGATCY 2 cut(s) 736, 1222
BstYI RGATCY 2 cut(s) 736, 1222
BstZI CGGCCG 1 cut(s) 105
Bsu15I ATCGAT 1 cut(s) 2107
Bsu36I CCTNAGG 1 cut(s) 336
BsuRI GGCC 8 cut(s) 5, 74, 107, 250, 1174, 1275, 1964, 2182
BsuTUI ATCGAT 1 cut(s) 2107
BtgI CCRYGG 6 cut(s) 75, 111, 180, 642, 1411, 2066
BtsCI GGATG 5 cut(s) 231, 262, 652, 1549, 2260
BtsI GCAGTG 2 cut(s) 309, 2256
BtsIMutI CAGTG 6 cut(s) 309, 812, 2080, 2199, 2256, 2272
BveI ACCTGC 1 cut(s) 1455
Cac8I GCNNGC 4 cut(s) 229, 498, 865, 1858
CaiI CAGNNNCTG 1 cut(s) 2271
CfoI GCGC 4 cut(s) 82, 165, 1464, 2202
Cfr13I GGNCC 4 cut(s) 145, 464, 1046, 1408
Cfr42I CCGCGG 1 cut(s) 78
ClaI ATCGAT 1 cut(s) 2107
CseI GACGC 3 cut(s) 34, 118, 174
CsiI ACCWGGT 1 cut(s) 1927
Csp6I GTAC 5 cut(s) 566, 1497, 1626, 1925, 2140
CviQI GTAC 5 cut(s) 566, 1497, 1626, 1925, 2140
DinI GGCGCC 1 cut(s) 81
DpnI GATC 9 cut(s) 159, 176, 239, 738, 960, 1005, 1224, 1233, 2110
DpnII GATC 9 cut(s) 157, 174, 237, 736, 958, 1003, 1222, 1231, 2108
DrdI GACNNNNNNGTC 2 cut(s) 1772, 2183
DseDI GACNNNNNNGTC 2 cut(s) 1772, 2183
EaeI YGGCCR 1 cut(s) 105
EagI CGGCCG 1 cut(s) 105
Eam1104I CTCTTC 4 cut(s) 710, 1398, 1794, 1972
EarI CTCTTC 4 cut(s) 710, 1398, 1794, 1972
EciI GGCGGA 2 cut(s) 196, 211
EclXI CGGCCG 1 cut(s) 105
Eco105I TACGTA 1 cut(s) 2143
Eco130I CCWWGG 4 cut(s) 180, 642, 1276, 1411
Eco147I AGGCCT 2 cut(s) 250, 1174
Eco47I GGWCC 4 cut(s) 145, 464, 1046, 1408
Eco47III AGCGCT 1 cut(s) 164
Eco52I CGGCCG 1 cut(s) 105
Eco57I CTGAAG 3 cut(s) 1062, 1581, 1818
Eco72I CACGTG 1 cut(s) 2024
Eco81I CCTNAGG 1 cut(s) 336
EcoNI CCTNNNNNAGG 1 cut(s) 1301
EcoRII CCWGG 9 cut(s) 69, 755, 1115, 1431, 1603, 1708, 1759, 1927, 2038
EcoT14I CCWWGG 4 cut(s) 180, 642, 1276, 1411
EcoT22I ATGCAT 2 cut(s) 415, 1789
EgeI GGCGCC 1 cut(s) 81
EheI GGCGCC 1 cut(s) 81
ErhI CCWWGG 4 cut(s) 180, 642, 1276, 1411
FaqI GGGAC 1 cut(s) 1179
FauI CCCGC 1 cut(s) 1865
FauNDI CATATG 2 cut(s) 1216, 2017
FokI GGATG 5 cut(s) 218, 249, 659, 1556, 2267
FspBI CTAG 5 cut(s) 377, 501, 792, 1127, 1739
FspI TGCGCA 1 cut(s) 1463
GlaI GCGC 4 cut(s) 81, 164, 1463, 2201
GsaI CCCAGC 1 cut(s) 1266
GsuI CTGGAG 7 cut(s) 345, 936, 1383, 1459, 1626, 1782, 2061
HaeII RGCGCY 2 cut(s) 83, 166
HaeIII GGCC 8 cut(s) 5, 74, 107, 250, 1174, 1275, 1964, 2182
HapII CCGG 1 cut(s) 1640
HgaI GACGC 3 cut(s) 34, 118, 174
HhaI GCGC 4 cut(s) 82, 165, 1464, 2202
Hin1I GRCGYC 3 cut(s) 26, 80, 185
Hin6I GCGC 4 cut(s) 80, 163, 1462, 2200
HinP1I GCGC 4 cut(s) 80, 163, 1462, 2200
HincII GTYRAC 2 cut(s) 1891, 1908
HindII GTYRAC 2 cut(s) 1891, 1908
HindIII AAGCTT 4 cut(s) 482, 1051, 1919, 2348
HinfI GANTC 8 cut(s) 44, 193, 879, 1107, 1521, 1820, 2104, 2229
HpaI GTTAAC 2 cut(s) 1891, 1908
HpaII CCGG 1 cut(s) 1640
HphI GGTGA 2 cut(s) 925, 995
Hpy166II GTNNAC 6 cut(s) 464, 514, 587, 1777, 1891, 1908
Hpy188I TCNGA 9 cut(s) 43, 450, 492, 562, 1008, 1616, 1825, 1960, 2331
Hpy188III TCNNGA 9 cut(s) 119, 197, 235, 377, 742, 1470, 1541, 1990, 2114
Hpy8I GTNNAC 6 cut(s) 464, 514, 587, 1777, 1891, 1908
Hpy99I CGWCG 4 cut(s) 28, 101, 134, 158
HpyAV CCTTC 6 cut(s) 39, 213, 1037, 1164, 1297, 2072
HpyCH4III ACNGT 8 cut(s) 313, 932, 1483, 1501, 1630, 1841, 1888, 1905
HpyCH4IV ACGT 3 cut(s) 2023, 2142, 2160
HpyF10VI GCNNNNNNNGC 8 cut(s) 113, 215, 224, 326, 1259, 1793, 2188, 2197
HpySE526I ACGT 3 cut(s) 2023, 2142, 2160
Hsp92I GRCGYC 3 cut(s) 26, 80, 185
HspAI GCGC 4 cut(s) 80, 163, 1462, 2200
KasI GGCGCC 1 cut(s) 79
KspAI GTTAAC 2 cut(s) 1891, 1908
KspI CCGCGG 1 cut(s) 78
Kzo9I GATC 9 cut(s) 157, 174, 237, 736, 958, 1003, 1222, 1231, 2108
LguI GCTCTTC 1 cut(s) 1972
LmnI GCTCC 8 cut(s) 44, 126, 170, 326, 793, 1592, 1735, 2197
Lsp1109I GCAGC 4 cut(s) 271, 332, 584, 1969
LweI GCATC 9 cut(s) 240, 271, 400, 637, 694, 742, 775, 1249, 1330
MabI ACCWGGT 1 cut(s) 1927
MaeI CTAG 5 cut(s) 377, 501, 792, 1127, 1739
MaeII ACGT 3 cut(s) 2023, 2142, 2160
MaeIII GTNAC 3 cut(s) 836, 857, 2008
MalI GATC 9 cut(s) 159, 176, 239, 738, 960, 1005, 1224, 1233, 2110
MboI GATC 9 cut(s) 157, 174, 237, 736, 958, 1003, 1222, 1231, 2108
MfeI CAATTG 2 cut(s) 1140, 1377
MflI RGATCY 2 cut(s) 736, 1222
MhlI GDGCHC 1 cut(s) 1597
Mly113I GGCGCC 1 cut(s) 80
MmeI TCCRAC 1 cut(s) 457
Mph1103I ATGCAT 2 cut(s) 415, 1789
MroXI GAANNNNTTC 1 cut(s) 369
MseI TTAA 4 cut(s) 1566, 1746, 1890, 1907
MslI CAYNNNNRTG 3 cut(s) 911, 1782, 2192
MspA1I CMGCKG 2 cut(s) 77, 323
MspI CCGG 1 cut(s) 1640
MunI CAATTG 2 cut(s) 1140, 1377
Mva1269I GAATGC 1 cut(s) 220
MvaI CCWGG 9 cut(s) 71, 757, 1117, 1433, 1605, 1710, 1761, 1929, 2040
MvnI CGCG 3 cut(s) 77, 134, 153
MwoI GCNNNNNNNGC 8 cut(s) 113, 215, 224, 326, 1259, 1793, 2188, 2197
NarI GGCGCC 1 cut(s) 80
NciI CCSGG 1 cut(s) 1641
NcoI CCATGG 3 cut(s) 180, 642, 1411
NdeI CATATG 2 cut(s) 1216, 2017
NdeII GATC 9 cut(s) 157, 174, 237, 736, 958, 1003, 1222, 1231, 2108
NlaIV GGNNCC 4 cut(s) 81, 273, 942, 1212
NmuCI GTSAC 1 cut(s) 836
NsbI TGCGCA 1 cut(s) 1463
NsiI ATGCAT 2 cut(s) 415, 1789
NspI RCATGY 2 cut(s) 395, 572
NspV TTCGAA 1 cut(s) 14
PasI CCCWGGG 1 cut(s) 1116
PceI AGGCCT 2 cut(s) 250, 1174
PciI ACATGT 1 cut(s) 391
PciSI GCTCTTC 1 cut(s) 1972
PcsI WCGNNNNNNNCGW 2 cut(s) 20, 138
PctI GAATGC 1 cut(s) 220
PdmI GAANNNNTTC 1 cut(s) 369
PfeI GAWTC 8 cut(s) 44, 193, 879, 1107, 1521, 1820, 2104, 2229
PflFI GACNNNGTC 1 cut(s) 2129
PflMI CCANNNNNTGG 1 cut(s) 1952
PfoI TCCNGGA 1 cut(s) 2038
PluTI GGCGCC 1 cut(s) 83
PmaCI CACGTG 1 cut(s) 2024
PmlI CACGTG 1 cut(s) 2024
Ppu21I YACGTR 2 cut(s) 2024, 2143
PscI ACATGT 1 cut(s) 391
Psp6I CCWGG 9 cut(s) 69, 755, 1115, 1431, 1603, 1708, 1759, 1927, 2038
PspCI CACGTG 1 cut(s) 2024
PspFI CCCAGC 1 cut(s) 1262
PspGI CCWGG 9 cut(s) 69, 755, 1115, 1431, 1603, 1708, 1759, 1927, 2038
PspN4I GGNNCC 4 cut(s) 81, 273, 942, 1212
PspPI GGNCC 4 cut(s) 145, 464, 1046, 1408
PstI CTGCAG 1 cut(s) 2251
PstNI CAGNNNCTG 1 cut(s) 2271
PsuI RGATCY 2 cut(s) 736, 1222
PsyI GACNNNGTC 1 cut(s) 2129
PvuII CAGCTG 1 cut(s) 323
RsaI GTAC 5 cut(s) 567, 1498, 1627, 1926, 2141
RsaNI GTAC 5 cut(s) 566, 1497, 1626, 1925, 2140
RseI CAYNNNNRTG 3 cut(s) 911, 1782, 2192
SacII CCGCGG 1 cut(s) 78
SapI GCTCTTC 1 cut(s) 1972
SaqAI TTAA 4 cut(s) 1566, 1746, 1890, 1907
Sau3AI GATC 9 cut(s) 157, 174, 237, 736, 958, 1003, 1222, 1231, 2108
Sau96I GGNCC 4 cut(s) 145, 464, 1046, 1408
SduI GDGCHC 1 cut(s) 1597
SexAI ACCWGGT 1 cut(s) 1927
SfaNI GCATC 9 cut(s) 240, 271, 400, 637, 694, 742, 775, 1249, 1330
SfcI CTRYAG 3 cut(s) 823, 1176, 2247
SfoI GGCGCC 1 cut(s) 81
Sfr303I CCGCGG 1 cut(s) 78
SfuI TTCGAA 1 cut(s) 14
SgrBI CCGCGG 1 cut(s) 78
SinI GGWCC 4 cut(s) 145, 464, 1046, 1408
SmiMI CAYNNNNRTG 3 cut(s) 911, 1782, 2192
SnaBI TACGTA 1 cut(s) 2143
SseBI AGGCCT 2 cut(s) 250, 1174
SspDI GGCGCC 1 cut(s) 79
SspMI CTAG 5 cut(s) 377, 501, 792, 1127, 1739
StuI AGGCCT 2 cut(s) 250, 1174
StyI CCWWGG 4 cut(s) 180, 642, 1276, 1411
TaaI ACNGT 8 cut(s) 313, 932, 1483, 1501, 1630, 1841, 1888, 1905
TaiI ACGT 3 cut(s) 2026, 2145, 2163
TaqI TCGA 3 cut(s) 14, 89, 2107
TatI WGTACW 2 cut(s) 565, 1496
TauI GCSGC 6 cut(s) 77, 80, 110, 137, 153, 227
TfiI GAWTC 8 cut(s) 44, 193, 879, 1107, 1521, 1820, 2104, 2229
Tru1I TTAA 4 cut(s) 1566, 1746, 1890, 1907
Tru9I TTAA 4 cut(s) 1566, 1746, 1890, 1907
TscAI CASTG 6 cut(s) 309, 819, 2080, 2199, 2256, 2272
TseFI GTSAC 1 cut(s) 836
TseI GCWGC 4 cut(s) 284, 320, 572, 1982
Tsp45I GTSAC 1 cut(s) 836
TspDTI ATGAA 4 cut(s) 21, 725, 1527, 1649
TspRI CASTG 6 cut(s) 309, 819, 2080, 2199, 2256, 2272
Tth111I GACNNNGTC 1 cut(s) 2129
Van91I CCANNNNNTGG 1 cut(s) 1952
VpaK11BI GGWCC 4 cut(s) 145, 464, 1046, 1408
XagI CCTNNNNNAGG 1 cut(s) 1301
XapI RAATTY 3 cut(s) 291, 1093, 2048
XbaI TCTAGA 1 cut(s) 376
XceI RCATGY 2 cut(s) 395, 572
XcmI CCANNNNNNNNNTGG 1 cut(s) 649
XmnI GAANNNNTTC 1 cut(s) 369
XspI CTAG 5 cut(s) 377, 501, 792, 1127, 1739
Zsp2I ATGCAT 2 cut(s) 415, 1789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.