Rorug02G0251200

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000092
Physical Location & Seq
Forward (+)
26170544 .. 26172067
1524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0251200.1

Sequence Viewer

Length: 1353 bp
ATGTTGGACATCAATCTATTCAGAGAAGAGAAGGGCAACAACCCACAAATCATTCGCGAATCTCAGAAGCGTCGTTTCAAAAGCGTCGAGATCGTCGACGAGGTCATTCAGCTTGATAAACAATGGCGTCAACGTCAATTCGAGCTCGAGAATCTCAAGAAAGAGTTCAACAAGATCAACACGATCAACAAGAAAGTTGCTCAGTTCAGGATTTCAGGTCAGGATGCAACCGAGGTGTTTAAGGACACAGATGAAATCAAGAGGTTGATCGCAGAAAAAGAAATTGAAGTTCGAGAGGCTTTAAACCTTTTGAATTCGAAACTGGAAGTCATTGGAAACCTTGTGCATGATAGTGTTCCCTTGCATGATGATGAGGCCAATAATGCTGTGGTTAGATCGGTGGGTGAGAAACGGTTGGAGCCGAAACTCAAATATCACGTTGAGCTTGTTGAGCTTGTGGGTATTGCTGACTTGAAGAAAGGTGCTCAAGTAGCAGGAGGTAGAGGTTATTACTTGAAAGGTGCTGGCGTCCGCCTCAATCAAGCTCTGATAAATTTTGGTCTTGATTTCCTTGAGAAAAGGGGATACACTGCATTGCAGACTCCATTTTTTATGAGGAAAGATATCATGGCAAAGTGTGCTCAATTAGCACAATTCGATGAGGAGCTTTATAAGGTTACCGGAGAGGGTGATGACAAATATCTGATTGCTACAGCTGAGCAGCCACTATGTGCATATCATGTGGACGATTGGATTCATCCTTCACAGCTGCCCATAAGATATGCTGGATATTCATCTTGTTTCCGCAAGGAAGCTGGTTCACATGGTCGAGATACCTTGGGAATTTTTAGGGTTCATCAGTTTGAAAAAGTTGAACAGTTTTGTATGACAAGCCCAAATGGCCAGGACTCTTGGGAAATGCTCCAGGAAATGATCAAGAACTCTGAGGAATTTTATCAGCAGCTCAAACTCCCTTATCGTGTTGTGTCTGTCGTTTCTGGTGCTTTGAATGATGCGGCAGCAAAGAAGTATGATCTGGAAGGATGGTTTCCAGCATCTCAGACATACAGGGAGCTCGTCTCATGTTCAAACTGTACAGACTACCAATCAAGAAAATTAGGAATTCGATTTGGGCAGAAAAAGAGCAATGAGCAGAAGAAGCAATACGTTCACTTGTTGAACTCCACTCTTACAGCAACTGAGAGAACCATTTGCTGCATTCTTGAAAACTATCAGAGGGAAGATGGTGTTGAGGTACCAGAAGTCTTACGAAACTACATGGGTGGAGTGTCCTTCCTACCATTCACGAACAAACCAGCCCCTGAAGTCAAAGGGAAGAAATCAAAGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

450

Amino Acids

51.63

Weight (kDa)

7.96

Isoelectric Point (pI)

36.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Seryl_tRNA_N PF02403 1 - 115 2.2e-21 Seryl-tRNA synthetase N-terminal domain
tRNA-synt_2b PF00587 224 - 411 3.8e-43 tRNA synthetase class II core domain (G, H, P, S and T)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000092)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21210 AT2G21210 AT3G20220 AT4G34780 AT4G38840
fragaria_vesca FvH4_2g10810 FvH4_2g10820 FvH4_2g10850 FvH4_2g10870 FvH4_3g13730 FvH4_5g22620 FvH4_5g22660 FvH4_5g22690 FvH4_5g22700 FvH4_5g22780 FvH4_5g22790 FvH4_5g22810 FvH4_5g22821 FvH4_5g22822 FvH4_5g24600 FvH4_5g24720
malus_domestica MD05G1051600.v1.1 MD05G1051700.v1.1 MD05G1051800.v1.1 MD05G1052000.v1.1 MD05G1052100.v1.1 MD05G1052200.v1.1 MD05G1052300.v1.1 MD05G1052400.v1.1 MD05G1113300.v1.1 MD10G1059200.v1.1 MD10G1059500.v1.1 MD10G1059600.v1.1 MD10G1059700.v1.1 MD10G1059800.v1.1 MD10G1060100.v1.1 MD10G1060200.v1.1 MD10G1060300.v1.1 MD10G1060400.v1.1 MD10G1060500.v1.1 MD10G1060600.v1.1 MD10G1060700.v1.1 MD10G1060800.v1.1 MD10G1060900.v1.1 MD10G1061000.v1.1 MD10G1061100.v1.1
prunus_persica Prupe.8G078600_v2.0.a1 Prupe.8G078700_v2.0.a1 Prupe.8G078900_v2.0.a1 Prupe.8G079000_v2.0.a1 Prupe.8G079100_v2.0.a1 Prupe.8G079200_v2.0.a1 Prupe.8G079400_v2.0.a1 Prupe.8G079500_v2.0.a1 Prupe.8G079600_v2.0.a1 Prupe.8G079700_v2.0.a1 Prupe.8G079900_v2.0.a1 Prupe.8G080000_v2.0.a1 Prupe.8G080100_v2.0.a1 Prupe.8G080200_v2.0.a1 Prupe.8G080300_v2.0.a1 Prupe.8G080500_v2.0.a1 Prupe.8G080600_v2.0.a1 Prupe.8G080700_v2.0.a1 Prupe.8G080800_v2.0.a1 Prupe.8G081000_v2.0.a1 Prupe.8G081100_v2.0.a1 Prupe.8G081300_v2.0.a1 Prupe.8G081500_v2.0.a1 Prupe.8G081700_v2.0.a1 Prupe.8G157700_v2.0.a1
pyrus_communis pycom05g04350 pycom05g04390 pycom05g04400 pycom05g04410 pycom10g04550 pycom10g04560 pycom10g04570 pycom10g04580 pycom10g04590 pycom10g04600 pycom10g04610 pycom10g04630 pycom10g04640 pycom10g04650 pycom10g04660 pycom10g04680 pycom10g10040
rosa_chinensis RchiOBHm_Chr0c32g0501561 RchiOBHm_Chr2g0124401 RchiOBHm_Chr2g0124451 RchiOBHm_Chr2g0124461 RchiOBHm_Chr2g0124531 RchiOBHm_Chr2g0124561 RchiOBHm_Chr3g0483671 RchiOBHm_Chr3g0483711 RchiOBHm_Chr5g0056801 RchiOBHm_Chr5g0056821 RchiOBHm_Chr5g0056831 RchiOBHm_Chr5g0056841 RchiOBHm_Chr5g0059921 RchiOBHm_Chr6g0268901 RchiOBHm_Chr6g0268941 RchiOBHm_Chr6g0268951 RchiOBHm_Chr6g0268961 RchiOBHm_Chr7g0210461 RchiOBHm_Chr7g0210481 RchiOBHm_Chr7g0210491 RchiOBHm_Chr7g0210511 RchiOBHm_Chr7g0210531 RchiOBHm_Chr7g0210621 RchiOBHm_Chr7g0210641 RchiOBHm_Chr7g0210651 RchiOBHm_Chr7g0210661 RchiOBHm_Chr7g0210711 RchiOBHm_Chr7g0210801 RchiOBHm_Chr7g0210831 RchiOBHm_Chr7g0210851 RchiOBHm_Chr7g0210871 RchiOBHm_Chr7g0210881 RchiOBHm_Chr7g0210891 RchiOBHm_Chr7g0211121 RchiOBHm_Chr7g0211131 RchiOBHm_Chr7g0211151 RchiOBHm_Chr7g0211501 RchiOBHm_Chr7g0211511
rosa_laevigata RLG00000003016 RLG00000003020 RLG00000003021 RLG00000003031 RLG00000003032 RLG00000003033 RLG00000003034 RLG00000003040 RLG00000003041 RLG00000018801 RLG00000035128 RLG00000035129
rosa_multiflora Rmu_co8425977.1_g000001 Rmu_sc0001081.1_g000010 Rmu_sc0001081.1_g000011 Rmu_sc0001303.1_g000001 Rmu_sc0001303.1_g000002 Rmu_sc0001303.1_g000004 Rmu_sc0001303.1_g000007 Rmu_sc0001460.1_g000030 Rmu_sc0001460.1_g000035 Rmu_sc0001460.1_g000041 Rmu_sc0001460.1_g000048 Rmu_sc0002755.1_g000005 Rmu_sc0002755.1_g000011 Rmu_sc0002755.1_g000017 Rmu_sc0002755.1_g000027 Rmu_sc0003765.1_g000020 Rmu_sc0003765.1_g000042 Rmu_sc0003765.1_g000043 Rmu_sc0003765.1_g000048 Rmu_sc0003765.1_g000057 Rmu_sc0003765.1_g000058 Rmu_sc0003807.1_g000013 Rmu_sc0003807.1_g000014 Rmu_sc0003807.1_g000015 Rmu_sc0003807.1_g000018 Rmu_sc0003907.1_g000001 Rmu_sc0005302.1_g000002 Rmu_sc0005302.1_g000003 Rmu_sc0005696.1_g000001 Rmu_sc0005844.1_g000001 Rmu_sc0005844.1_g000002 Rmu_sc0005844.1_g000003 Rmu_sc0008289.1_g000006 Rmu_sc0008289.1_g000008 Rmu_sc0008289.1_g000009 Rmu_sc0008289.1_g000014 Rmu_sc0010535.1_g000012 Rmu_sc0010535.1_g000013 Rmu_sc0010535.1_g000014 Rmu_sc0010535.1_g000015 Rmu_sc0011084.1_g000001 Rmu_sc0011691.1_g000001 Rmu_sc0017239.1_g000001 Rmu_sc0018437.1_g000009 Rmu_sc0018662.1_g000001 Rmu_sc0018662.1_g000003 Rmu_sc0020409.1_g000001 Rmu_sc0024576.1_g000001 Rmu_sc0034951.1_g000001
rosa_roxburghii Rroxscaffold_1G00023480 Rroxscaffold_1G00023490 Rroxscaffold_1G00023570 Rroxscaffold_2G00119860 Rroxscaffold_2G00119910 Rroxscaffold_3G00247990 Rroxscaffold_3G00248000 Rroxscaffold_3G00248010 Rroxscaffold_3G00248060 Rroxscaffold_3G00248070 Rroxscaffold_3G00248090 Rroxscaffold_3G00248100 Rroxscaffold_3G00248210 Rroxscaffold_3G00248230 Rroxscaffold_3G00248240 Rroxscaffold_3G00248270 Rroxscaffold_3G00248290
rosa_rugosa Rorug02G0251000.1 Rorug02G0251100 Rorug02G0251100 Rorug02G0251200 Rorug02G0251300 Rorug05G0302000 Rorug05G0302100 Rorug05G0302400 Rorug05G0302500 Rorug06G0043500 Rorug06G0043600 Rorug06G0043600 Rorug07G0121600 Rorug07G0121700 Rorug07G0121800 Rorug07G0121900 Rorug07G0122300 Rorug07G0122400 Rorug07G0122500 Rorug07G0122600 Rorug07G0122700 Rorug07G0122700 Rorug07G0123100 Rorug07G0123200 Rorug07G0123300 Rorug07G0123600 Rorug07G0123700 Rorug07G0124200 Rorug07G0124300 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124600 Rorug07G0124700
rosa_wichuraiana Rw0G021160 Rw0G021170 Rw2G024970 Rw2G024980 Rw2G025000 Rw2G025020 Rw2G025030 Rw2G025040 Rw2G025050 Rw3G023170 Rw3G023180 Rw5G034930 Rw5G034940 Rw5G034960 Rw5G035050 Rw5G035060 Rw5G035070 Rw6G014100 Rw6G014110 Rw6G014130 Rw6G014140 Rw6G014150 Rw7G021690 Rw7G021700 Rw7G021710 Rw7G021720 Rw7G021740 Rw7G021750 Rw7G021760 Rw7G021770 Rw7G021790 Rw7G021800 Rw7G021810 Rw7G021820 Rw7G021900 Rw7G021910 Rw7G021920 Rw7G021930 Rw7G021940 Rw7G021950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 672
Acc65I GGTACC 1 cut(s) 1255
AccB1I GGYRCC 1 cut(s) 1255
AccI GTMKAC 1 cut(s) 96
AccII CGCG 1 cut(s) 57
AciI CCGC 3 cut(s) 532, 805, 1016
AcoI YGGCCR 1 cut(s) 901
AcsI RAATTY 5 cut(s) 313, 553, 843, 950, 1122
AcuI CTGAAG 1 cut(s) 1344
AcyI GRCGYC 2 cut(s) 127, 528
AdeI CACNNNGTG 1 cut(s) 731
AfaI GTAC 2 cut(s) 1096, 1257
AjnI CCWGG 2 cut(s) 903, 924
Alw21I GWGCWC 4 cut(s) 147, 487, 643, 1077
Alw26I GTCTC 1 cut(s) 1084
AlwNI CAGNNNCTG 2 cut(s) 1199, 1322
Ama87I CYCGRG 1 cut(s) 146
AoxI GGCC 3 cut(s) 375, 901, 1347
ApeKI GCWGC 5 cut(s) 721, 769, 961, 1019, 1215
ApoI RAATTY 5 cut(s) 313, 553, 843, 950, 1122
Asp700I GAANNNNTTC 1 cut(s) 164
Asp718I GGTACC 1 cut(s) 1255
AsuHPI GGTGA 2 cut(s) 416, 701
AsuII TTCGAA 1 cut(s) 317
AvaI CYCGRG 1 cut(s) 146
BalI TGGCCA 1 cut(s) 903
BanI GGYRCC 1 cut(s) 1255
BanII GRGCYC 2 cut(s) 147, 1077
BarI GAAGNNNNNNTAC 2 cut(s) 1148, 1180
Bbv12I GWGCWC 4 cut(s) 147, 487, 643, 1077
BbvI GCAGC 5 cut(s) 733, 756, 973, 1031, 1202
BccI CCATC 2 cut(s) 1038, 1238
BciT130I CCWGG 2 cut(s) 905, 926
BciVI GTATCC 1 cut(s) 578
BclI TGATCA 1 cut(s) 933
BcoDI GTCTC 1 cut(s) 1084
BfmI CTRYAG 1 cut(s) 711
BfuI GTATCC 1 cut(s) 578
BglI GCCNNNNNGGC 1 cut(s) 900
BisI GCNGC 6 cut(s) 722, 770, 962, 1017, 1020, 1216
BlpI GCTNAGC 1 cut(s) 717
BlsI GCNGC 6 cut(s) 723, 771, 963, 1018, 1021, 1217
Bme1390I CCNGG 2 cut(s) 905, 926
BmeT110I CYCGRG 1 cut(s) 146
BmiI GGNNCC 2 cut(s) 420, 1257
BmrFI CCNGG 2 cut(s) 905, 926
BmsI GCATC 3 cut(s) 214, 1003, 1064
BplI GAGNNNNNCTC 2 cut(s) 1064, 1096
BpmI CTGGAG 1 cut(s) 908
Bpu1102I GCTNAGC 1 cut(s) 717
Bpu14I TTCGAA 1 cut(s) 317
BpuEI CTTGAG 3 cut(s) 140, 471, 593
BsaBI GATNNNNATC 1 cut(s) 793
BsaHI GRCGYC 2 cut(s) 127, 528
BsaJI CCNNGG 2 cut(s) 231, 837
BsaWI WCCGGW 1 cut(s) 680
Bse1I ACTGG 1 cut(s) 327
Bse3DI GCAATG 2 cut(s) 593, 1153
Bse8I GATNNNNATC 1 cut(s) 793
BseBI CCWGG 2 cut(s) 905, 926
BseDI CCNNGG 2 cut(s) 231, 837
BseGI GGATG 3 cut(s) 229, 757, 1049
BseJI GATNNNNATC 1 cut(s) 793
BseMI GCAATG 2 cut(s) 593, 1153
BseMII CTCAG 6 cut(s) 77, 215, 708, 936, 1073, 1191
BseNI ACTGG 1 cut(s) 327
BseRI GAGGAG 1 cut(s) 677
BseXI GCAGC 5 cut(s) 733, 756, 973, 1031, 1202
Bsh1236I CGCG 1 cut(s) 57
BshFI GGCC 3 cut(s) 377, 903, 1349
BshNI GGYRCC 1 cut(s) 1255
BsiHKAI GWGCWC 4 cut(s) 147, 487, 643, 1077
BsiHKCI CYCGRG 1 cut(s) 146
BsiSI CCGG 1 cut(s) 681
BsmAI GTCTC 1 cut(s) 1084
BsmBI CGTCTC 1 cut(s) 1084
BsmI GAATGC 1 cut(s) 1218
BsnI GGCC 3 cut(s) 377, 903, 1349
BsoBI CYCGRG 1 cut(s) 146
Bsp119I TTCGAA 1 cut(s) 317
Bsp1286I GDGCHC 4 cut(s) 147, 487, 643, 1077
Bsp1407I TGTACA 1 cut(s) 1094
Bsp143I GATC 7 cut(s) 90, 174, 183, 267, 395, 933, 1033
Bsp1720I GCTNAGC 1 cut(s) 717
Bsp68I TCGCGA 1 cut(s) 57
BspACI CCGC 3 cut(s) 532, 805, 1016
BspANI GGCC 3 cut(s) 377, 903, 1349
BspCNI CTCAG 6 cut(s) 76, 214, 709, 937, 1072, 1192
BspFNI CGCG 1 cut(s) 57
BspLI GGNNCC 2 cut(s) 420, 1257
BspT104I TTCGAA 1 cut(s) 317
BspT107I GGYRCC 1 cut(s) 1255
BsrDI GCAATG 2 cut(s) 593, 1153
BsrGI TGTACA 1 cut(s) 1094
BsrI ACTGG 1 cut(s) 327
BssECI CCNNGG 2 cut(s) 231, 837
BssMI GATC 7 cut(s) 90, 174, 183, 267, 395, 933, 1033
BssNI GRCGYC 2 cut(s) 127, 528
BssT1I CCWWGG 1 cut(s) 837
Bst2UI CCWGG 2 cut(s) 905, 926
Bst4CI ACNGT 3 cut(s) 414, 879, 1094
Bst6I CTCTTC 1 cut(s) 21
BstACI GRCGYC 2 cut(s) 127, 528
BstAPI GCANNNNNTGC 1 cut(s) 638
BstAUI TGTACA 1 cut(s) 1094
BstBI TTCGAA 1 cut(s) 317
BstC8I GCNNGC 1 cut(s) 526
BstDEI CTNAG 6 cut(s) 63, 201, 717, 945, 1059, 1200
BstEII GGTNACC 1 cut(s) 676
BstF5I GGATG 3 cut(s) 229, 757, 1049
BstFNI CGCG 1 cut(s) 57
BstKTI GATC 7 cut(s) 93, 177, 186, 270, 398, 936, 1036
BstMAI GTCTC 1 cut(s) 1084
BstMBI GATC 7 cut(s) 90, 174, 183, 267, 395, 933, 1033
BstMWI GCNNNNNNNGC 7 cut(s) 383, 451, 491, 638, 647, 900, 1159
BstNI CCWGG 2 cut(s) 905, 926
BstPI GGTNACC 1 cut(s) 676
BstSCI CCNGG 2 cut(s) 903, 924
BstSFI CTRYAG 1 cut(s) 711
BstUI CGCG 1 cut(s) 57
BstV1I GCAGC 5 cut(s) 733, 756, 973, 1031, 1202
BsuI GTATCC 1 cut(s) 578
BsuRI GGCC 3 cut(s) 377, 903, 1349
BtsCI GGATG 3 cut(s) 229, 757, 1049
BtsI GCAGTG 1 cut(s) 588
BtsIMutI CAGTG 1 cut(s) 588
BtuMI TCGCGA 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 526
CaiI CAGNNNCTG 2 cut(s) 1199, 1322
CseI GACGC 4 cut(s) 59, 73, 116, 517
Csp6I GTAC 2 cut(s) 1095, 1256
CviAII CATG 7 cut(s) 347, 365, 628, 740, 824, 1083, 1279
CviQI GTAC 2 cut(s) 1095, 1256
DdeI CTNAG 6 cut(s) 63, 201, 717, 945, 1059, 1200
DpnI GATC 7 cut(s) 92, 176, 185, 269, 397, 935, 1035
DpnII GATC 7 cut(s) 90, 174, 183, 267, 395, 933, 1033
DraI TTTAAA 1 cut(s) 303
DraIII CACNNNGTG 1 cut(s) 731
EaeI YGGCCR 1 cut(s) 901
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
EciI GGCGGA 1 cut(s) 521
Ecl136II GAGCTC 2 cut(s) 145, 1075
Eco130I CCWWGG 1 cut(s) 837
Eco147I AGGCCT 1 cut(s) 1349
Eco24I GRGCYC 2 cut(s) 147, 1077
Eco32I GATATC 1 cut(s) 625
Eco53kI GAGCTC 2 cut(s) 145, 1075
Eco57I CTGAAG 1 cut(s) 1344
Eco88I CYCGRG 1 cut(s) 146
Eco91I GGTNACC 1 cut(s) 676
EcoICRI GAGCTC 2 cut(s) 145, 1075
EcoO65I GGTNACC 1 cut(s) 676
EcoRI GAATTC 2 cut(s) 313, 1122
EcoRII CCWGG 2 cut(s) 903, 924
EcoRV GATATC 1 cut(s) 625
EcoT14I CCWWGG 1 cut(s) 837
EcoT38I GRGCYC 2 cut(s) 147, 1077
ErhI CCWWGG 1 cut(s) 837
Esp3I CGTCTC 1 cut(s) 1084
FaeI CATG 7 cut(s) 350, 368, 631, 743, 827, 1086, 1282
FatI CATG 7 cut(s) 346, 364, 627, 739, 823, 1082, 1278
FbaI TGATCA 1 cut(s) 933
FblI GTMKAC 1 cut(s) 96
Fnu4HI GCNGC 6 cut(s) 722, 770, 962, 1017, 1020, 1216
FokI GGATG 3 cut(s) 236, 744, 1056
FriOI GRGCYC 2 cut(s) 147, 1077
Fsp4HI GCNGC 6 cut(s) 722, 770, 962, 1017, 1020, 1216
GluI GCNGC 6 cut(s) 722, 770, 962, 1017, 1020, 1216
GsuI CTGGAG 1 cut(s) 908
HaeIII GGCC 3 cut(s) 377, 903, 1349
HapII CCGG 1 cut(s) 681
HgaI GACGC 4 cut(s) 59, 73, 116, 517
Hin1I GRCGYC 2 cut(s) 127, 528
Hin1II CATG 7 cut(s) 350, 368, 631, 743, 827, 1086, 1282
HincII GTYRAC 2 cut(s) 97, 131
HindII GTYRAC 2 cut(s) 97, 131
HinfI GANTC 5 cut(s) 59, 151, 601, 754, 908
HpaII CCGG 1 cut(s) 681
HphI GGTGA 2 cut(s) 416, 701
Hpy166II GTNNAC 5 cut(s) 97, 131, 745, 821, 1171
Hpy188I TCNGA 7 cut(s) 23, 66, 549, 705, 946, 1062, 1236
Hpy8I GTNNAC 5 cut(s) 97, 131, 745, 821, 1171
Hpy99I CGWCG 4 cut(s) 75, 89, 98, 101
HpyAV CCTTC 4 cut(s) 25, 771, 1034, 1303
HpyCH4III ACNGT 3 cut(s) 414, 879, 1094
HpyCH4IV ACGT 3 cut(s) 133, 438, 1167
HpyCH4V TGCA 7 cut(s) 227, 346, 364, 593, 598, 734, 1218
HpyF10VI GCNNNNNNNGC 7 cut(s) 383, 451, 491, 638, 647, 900, 1159
HpyF3I CTNAG 6 cut(s) 63, 201, 717, 945, 1059, 1200
HpySE526I ACGT 3 cut(s) 133, 438, 1167
Hsp92I GRCGYC 2 cut(s) 127, 528
Hsp92II CATG 7 cut(s) 350, 368, 631, 743, 827, 1086, 1282
KpnI GGTACC 1 cut(s) 1259
Ksp22I TGATCA 1 cut(s) 933
Kzo9I GATC 7 cut(s) 90, 174, 183, 267, 395, 933, 1033
LmnI GCTCC 4 cut(s) 418, 664, 927, 1072
Lsp1109I GCAGC 5 cut(s) 733, 756, 973, 1031, 1202
LweI GCATC 3 cut(s) 214, 1003, 1064
MaeII ACGT 3 cut(s) 133, 438, 1167
MaeIII GTNAC 1 cut(s) 676
MalI GATC 7 cut(s) 92, 176, 185, 269, 397, 935, 1035
MboI GATC 7 cut(s) 90, 174, 183, 267, 395, 933, 1033
MboII GAAGA 5 cut(s) 38, 487, 1168, 1253, 1348
MhlI GDGCHC 4 cut(s) 147, 487, 643, 1077
MlsI TGGCCA 1 cut(s) 903
MluNI TGGCCA 1 cut(s) 903
MlyI GAGTC 2 cut(s) 595, 902
MmeI TCCRAC 1 cut(s) 396
Mox20I TGGCCA 1 cut(s) 903
MroXI GAANNNNTTC 1 cut(s) 164
MscI TGGCCA 1 cut(s) 903
MseI TTAA 2 cut(s) 240, 302
MslI CAYNNNNRTG 2 cut(s) 351, 369
Msp20I TGGCCA 1 cut(s) 903
MspA1I CMGCKG 2 cut(s) 716, 769
MspI CCGG 1 cut(s) 681
MspR9I CCNGG 2 cut(s) 905, 926
Mva1269I GAATGC 1 cut(s) 1218
MvaI CCWGG 2 cut(s) 905, 926
MvnI CGCG 1 cut(s) 57
MwoI GCNNNNNNNGC 7 cut(s) 383, 451, 491, 638, 647, 900, 1159
NdeII GATC 7 cut(s) 90, 174, 183, 267, 395, 933, 1033
NlaIII CATG 7 cut(s) 350, 368, 631, 743, 827, 1086, 1282
NlaIV GGNNCC 2 cut(s) 420, 1257
NruI TCGCGA 1 cut(s) 57
NspV TTCGAA 1 cut(s) 317
PaeR7I CTCGAG 1 cut(s) 146
PceI AGGCCT 1 cut(s) 1349
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PctI GAATGC 1 cut(s) 1218
PdmI GAANNNNTTC 1 cut(s) 164
PfeI GAWTC 3 cut(s) 59, 151, 754
PflFI GACNNNGTC 1 cut(s) 101
PfoI TCCNGGA 1 cut(s) 924
PkrI GCNGC 6 cut(s) 723, 771, 963, 1018, 1021, 1217
PleI GAGTC 2 cut(s) 595, 902
PpsI GAGTC 2 cut(s) 595, 902
PsiI TTATAA 1 cut(s) 672
Psp124BI GAGCTC 2 cut(s) 147, 1077
Psp6I CCWGG 2 cut(s) 903, 924
PspEI GGTNACC 1 cut(s) 676
PspGI CCWGG 2 cut(s) 903, 924
PspN4I GGNNCC 2 cut(s) 420, 1257
PstNI CAGNNNCTG 2 cut(s) 1199, 1322
PsyI GACNNNGTC 1 cut(s) 101
PvuII CAGCTG 2 cut(s) 716, 769
RruI TCGCGA 1 cut(s) 57
RsaI GTAC 2 cut(s) 1096, 1257
RsaNI GTAC 2 cut(s) 1095, 1256
RseI CAYNNNNRTG 2 cut(s) 351, 369
SacI GAGCTC 2 cut(s) 147, 1077
SalI GTCGAC 1 cut(s) 95
SaqAI TTAA 2 cut(s) 240, 302
SatI GCNGC 6 cut(s) 722, 770, 962, 1017, 1020, 1216
Sau3AI GATC 7 cut(s) 90, 174, 183, 267, 395, 933, 1033
SchI GAGTC 2 cut(s) 595, 902
ScrFI CCNGG 2 cut(s) 905, 926
SduI GDGCHC 4 cut(s) 147, 487, 643, 1077
SfaNI GCATC 3 cut(s) 214, 1003, 1064
SfcI CTRYAG 1 cut(s) 711
Sfr274I CTCGAG 1 cut(s) 146
SfuI TTCGAA 1 cut(s) 317
SgrDI CGTCGACG 1 cut(s) 95
SlaI CTCGAG 1 cut(s) 146
SmiMI CAYNNNNRTG 2 cut(s) 351, 369
SmlI CTYRAG 4 cut(s) 146, 155, 486, 572
SmoI CTYRAG 4 cut(s) 146, 155, 486, 572
SseBI AGGCCT 1 cut(s) 1349
SsiI CCGC 3 cut(s) 532, 805, 1016
SstI GAGCTC 2 cut(s) 147, 1077
StuI AGGCCT 1 cut(s) 1349
StyD4I CCNGG 2 cut(s) 903, 924
StyI CCWWGG 1 cut(s) 837
TaaI ACNGT 3 cut(s) 414, 879, 1094
TaiI ACGT 3 cut(s) 136, 441, 1170
TaqI TCGA 9 cut(s) 87, 96, 141, 147, 292, 317, 657, 829, 1126
TatI WGTACW 1 cut(s) 1094
TauI GCSGC 1 cut(s) 1019
TfiI GAWTC 3 cut(s) 59, 151, 754
Tru1I TTAA 2 cut(s) 240, 302
Tru9I TTAA 2 cut(s) 240, 302
TscAI CASTG 1 cut(s) 595
TseI GCWGC 5 cut(s) 721, 769, 961, 1019, 1215
TspDTI ATGAA 4 cut(s) 267, 746, 783, 845
TspRI CASTG 1 cut(s) 595
Tth111I GACNNNGTC 1 cut(s) 101
XapI RAATTY 5 cut(s) 313, 553, 843, 950, 1122
XcmI CCANNNNNNNNNTGG 1 cut(s) 385
XhoI CTCGAG 1 cut(s) 146
XmiI GTMKAC 1 cut(s) 96
XmnI GAANNNNTTC 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.