Rroxscaffold_1G00023570

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000092
Physical Location & Seq
Forward (+)
29086714 .. 29088833
2120 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00023570.1

Sequence Viewer

Length: 477 bp
ATGGGTTTCCGGTTGCCTGGAATTTCTAATGCCAAGAGAAGTCCTACTAGATCTCTATCTGCTTCAAAGAGCTTTGATATCCCAAAAGGCTACTTTGCAGTATATGTTGGTTTGAGCCAGATGAAGCGATTTGTGATTCCAGTCTCATATTTGAACGAGCCTCTTTTTCTGGAATTGTTGAGTCAATCTGAAGAAGAATTTGGATATAATCATCCAATGGGTGGCATCACAATCCCATGCAGTGAACACACCTTCCTAGAACTCACTTCACGCTTAAAAGTTTACACGAGTGAAAAGACAAAATGGCCTTCTTGCTTATTTGATTTCAAAAATCAGAGTCCTCATGTTGGCAATAGCTTTAGAGGACTCATGACATGCCAGCTTTCTGCTTGTAGAAATTTGCATCTTGATCTGCTCAGCTTATTGAGACCTTCACAAACAACATTGCATAAGTTGTTTCAGGCTGGCCCCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

158

Amino Acids

17.79

Weight (kDa)

9.3

Isoelectric Point (pI)

51.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 14 - 91 1.3e-22 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000092)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21210 AT2G21210 AT3G20220 AT4G34780 AT4G38840
fragaria_vesca FvH4_2g10810 FvH4_2g10820 FvH4_2g10850 FvH4_2g10870 FvH4_3g13730 FvH4_5g22620 FvH4_5g22660 FvH4_5g22690 FvH4_5g22700 FvH4_5g22780 FvH4_5g22790 FvH4_5g22810 FvH4_5g22821 FvH4_5g22822 FvH4_5g24600 FvH4_5g24720
malus_domestica MD05G1051600.v1.1 MD05G1051700.v1.1 MD05G1051800.v1.1 MD05G1052000.v1.1 MD05G1052100.v1.1 MD05G1052200.v1.1 MD05G1052300.v1.1 MD05G1052400.v1.1 MD05G1113300.v1.1 MD10G1059200.v1.1 MD10G1059500.v1.1 MD10G1059600.v1.1 MD10G1059700.v1.1 MD10G1059800.v1.1 MD10G1060100.v1.1 MD10G1060200.v1.1 MD10G1060300.v1.1 MD10G1060400.v1.1 MD10G1060500.v1.1 MD10G1060600.v1.1 MD10G1060700.v1.1 MD10G1060800.v1.1 MD10G1060900.v1.1 MD10G1061000.v1.1 MD10G1061100.v1.1
prunus_persica Prupe.8G078600_v2.0.a1 Prupe.8G078700_v2.0.a1 Prupe.8G078900_v2.0.a1 Prupe.8G079000_v2.0.a1 Prupe.8G079100_v2.0.a1 Prupe.8G079200_v2.0.a1 Prupe.8G079400_v2.0.a1 Prupe.8G079500_v2.0.a1 Prupe.8G079600_v2.0.a1 Prupe.8G079700_v2.0.a1 Prupe.8G079900_v2.0.a1 Prupe.8G080000_v2.0.a1 Prupe.8G080100_v2.0.a1 Prupe.8G080200_v2.0.a1 Prupe.8G080300_v2.0.a1 Prupe.8G080500_v2.0.a1 Prupe.8G080600_v2.0.a1 Prupe.8G080700_v2.0.a1 Prupe.8G080800_v2.0.a1 Prupe.8G081000_v2.0.a1 Prupe.8G081100_v2.0.a1 Prupe.8G081300_v2.0.a1 Prupe.8G081500_v2.0.a1 Prupe.8G081700_v2.0.a1 Prupe.8G157700_v2.0.a1
pyrus_communis pycom05g04350 pycom05g04390 pycom05g04400 pycom05g04410 pycom10g04550 pycom10g04560 pycom10g04570 pycom10g04580 pycom10g04590 pycom10g04600 pycom10g04610 pycom10g04630 pycom10g04640 pycom10g04650 pycom10g04660 pycom10g04680 pycom10g10040
rosa_chinensis RchiOBHm_Chr0c32g0501561 RchiOBHm_Chr2g0124401 RchiOBHm_Chr2g0124451 RchiOBHm_Chr2g0124461 RchiOBHm_Chr2g0124531 RchiOBHm_Chr2g0124561 RchiOBHm_Chr3g0483671 RchiOBHm_Chr3g0483711 RchiOBHm_Chr5g0056801 RchiOBHm_Chr5g0056821 RchiOBHm_Chr5g0056831 RchiOBHm_Chr5g0056841 RchiOBHm_Chr5g0059921 RchiOBHm_Chr6g0268901 RchiOBHm_Chr6g0268941 RchiOBHm_Chr6g0268951 RchiOBHm_Chr6g0268961 RchiOBHm_Chr7g0210461 RchiOBHm_Chr7g0210481 RchiOBHm_Chr7g0210491 RchiOBHm_Chr7g0210511 RchiOBHm_Chr7g0210531 RchiOBHm_Chr7g0210621 RchiOBHm_Chr7g0210641 RchiOBHm_Chr7g0210651 RchiOBHm_Chr7g0210661 RchiOBHm_Chr7g0210711 RchiOBHm_Chr7g0210801 RchiOBHm_Chr7g0210831 RchiOBHm_Chr7g0210851 RchiOBHm_Chr7g0210871 RchiOBHm_Chr7g0210881 RchiOBHm_Chr7g0210891 RchiOBHm_Chr7g0211121 RchiOBHm_Chr7g0211131 RchiOBHm_Chr7g0211151 RchiOBHm_Chr7g0211501 RchiOBHm_Chr7g0211511
rosa_laevigata RLG00000003016 RLG00000003020 RLG00000003021 RLG00000003031 RLG00000003032 RLG00000003033 RLG00000003034 RLG00000003040 RLG00000003041 RLG00000018801 RLG00000035128 RLG00000035129
rosa_multiflora Rmu_co8425977.1_g000001 Rmu_sc0001081.1_g000010 Rmu_sc0001081.1_g000011 Rmu_sc0001303.1_g000001 Rmu_sc0001303.1_g000002 Rmu_sc0001303.1_g000004 Rmu_sc0001303.1_g000007 Rmu_sc0001460.1_g000030 Rmu_sc0001460.1_g000035 Rmu_sc0001460.1_g000041 Rmu_sc0001460.1_g000048 Rmu_sc0002755.1_g000005 Rmu_sc0002755.1_g000011 Rmu_sc0002755.1_g000017 Rmu_sc0002755.1_g000027 Rmu_sc0003765.1_g000020 Rmu_sc0003765.1_g000042 Rmu_sc0003765.1_g000043 Rmu_sc0003765.1_g000048 Rmu_sc0003765.1_g000057 Rmu_sc0003765.1_g000058 Rmu_sc0003807.1_g000013 Rmu_sc0003807.1_g000014 Rmu_sc0003807.1_g000015 Rmu_sc0003807.1_g000018 Rmu_sc0003907.1_g000001 Rmu_sc0005302.1_g000002 Rmu_sc0005302.1_g000003 Rmu_sc0005696.1_g000001 Rmu_sc0005844.1_g000001 Rmu_sc0005844.1_g000002 Rmu_sc0005844.1_g000003 Rmu_sc0008289.1_g000006 Rmu_sc0008289.1_g000008 Rmu_sc0008289.1_g000009 Rmu_sc0008289.1_g000014 Rmu_sc0010535.1_g000012 Rmu_sc0010535.1_g000013 Rmu_sc0010535.1_g000014 Rmu_sc0010535.1_g000015 Rmu_sc0011084.1_g000001 Rmu_sc0011691.1_g000001 Rmu_sc0017239.1_g000001 Rmu_sc0018437.1_g000009 Rmu_sc0018662.1_g000001 Rmu_sc0018662.1_g000003 Rmu_sc0020409.1_g000001 Rmu_sc0024576.1_g000001 Rmu_sc0034951.1_g000001
rosa_roxburghii Rroxscaffold_1G00023480 Rroxscaffold_1G00023490 Rroxscaffold_1G00023570 Rroxscaffold_2G00119860 Rroxscaffold_2G00119910 Rroxscaffold_3G00247990 Rroxscaffold_3G00248000 Rroxscaffold_3G00248010 Rroxscaffold_3G00248060 Rroxscaffold_3G00248070 Rroxscaffold_3G00248090 Rroxscaffold_3G00248100 Rroxscaffold_3G00248210 Rroxscaffold_3G00248230 Rroxscaffold_3G00248240 Rroxscaffold_3G00248270 Rroxscaffold_3G00248290
rosa_rugosa Rorug02G0251000.1 Rorug02G0251100 Rorug02G0251100 Rorug02G0251200 Rorug02G0251300 Rorug05G0302000 Rorug05G0302100 Rorug05G0302400 Rorug05G0302500 Rorug06G0043500 Rorug06G0043600 Rorug06G0043600 Rorug07G0121600 Rorug07G0121700 Rorug07G0121800 Rorug07G0121900 Rorug07G0122300 Rorug07G0122400 Rorug07G0122500 Rorug07G0122600 Rorug07G0122700 Rorug07G0122700 Rorug07G0123100 Rorug07G0123200 Rorug07G0123300 Rorug07G0123600 Rorug07G0123700 Rorug07G0124200 Rorug07G0124300 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124600 Rorug07G0124700
rosa_wichuraiana Rw0G021160 Rw0G021170 Rw2G024970 Rw2G024980 Rw2G025000 Rw2G025020 Rw2G025030 Rw2G025040 Rw2G025050 Rw3G023170 Rw3G023180 Rw5G034930 Rw5G034940 Rw5G034960 Rw5G035050 Rw5G035060 Rw5G035070 Rw6G014100 Rw6G014110 Rw6G014130 Rw6G014140 Rw6G014150 Rw7G021690 Rw7G021700 Rw7G021710 Rw7G021720 Rw7G021740 Rw7G021750 Rw7G021760 Rw7G021770 Rw7G021790 Rw7G021800 Rw7G021810 Rw7G021820 Rw7G021900 Rw7G021910 Rw7G021920 Rw7G021930 Rw7G021940 Rw7G021950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 221
AcsI RAATTY 3 cut(s) 21, 197, 397
AcuI CTGAAG 1 cut(s) 210
AfiI CCNNNNNNNGG 2 cut(s) 221, 347
AgsI TTSAA 3 cut(s) 66, 154, 328
AjnI CCWGG 1 cut(s) 16
AjuI GAANNNNNNNTTGG 2 cut(s) 183, 215
AloI GAACNNNNNNTCC 2 cut(s) 237, 269
AluBI AGCT 4 cut(s) 72, 357, 382, 420
AluI AGCT 4 cut(s) 72, 357, 382, 420
Alw26I GTCTC 2 cut(s) 148, 421
AoxI GGCC 2 cut(s) 305, 466
ApoI RAATTY 3 cut(s) 21, 197, 397
AspS9I GGNCC 1 cut(s) 467
BauI CACGAG 1 cut(s) 286
BciT130I CCWGG 1 cut(s) 18
BcoDI GTCTC 2 cut(s) 148, 421
BfaI CTAG 2 cut(s) 48, 257
BglII AGATCT 1 cut(s) 50
BlpI GCTNAGC 1 cut(s) 416
Bme1390I CCNGG 1 cut(s) 18
BmgT120I GGNCC 1 cut(s) 467
BmiI GGNNCC 1 cut(s) 469
BmrFI CCNGG 1 cut(s) 18
BmsI GCATC 2 cut(s) 234, 412
Bpu1102I GCTNAGC 1 cut(s) 416
BsaBI GATNNNNATC 1 cut(s) 55
BsaI GGTCTC 1 cut(s) 421
BsaWI WCCGGW 1 cut(s) 9
Bsc4I CCNNNNNNNGG 2 cut(s) 221, 347
Bse1I ACTGG 1 cut(s) 140
Bse3DI GCAATG 1 cut(s) 443
Bse8I GATNNNNATC 1 cut(s) 55
BseBI CCWGG 1 cut(s) 18
BseGI GGATG 1 cut(s) 211
BseJI GATNNNNATC 1 cut(s) 55
BseLI CCNNNNNNNGG 2 cut(s) 221, 347
BseMI GCAATG 1 cut(s) 443
BseMII CTCAG 1 cut(s) 430
BseNI ACTGG 1 cut(s) 140
BshFI GGCC 2 cut(s) 307, 468
BsiSI CCGG 1 cut(s) 10
BslI CCNNNNNNNGG 2 cut(s) 221, 347
BsmAI GTCTC 2 cut(s) 148, 421
BsnI GGCC 2 cut(s) 307, 468
Bso31I GGTCTC 1 cut(s) 421
Bsp143I GATC 2 cut(s) 50, 409
Bsp1720I GCTNAGC 1 cut(s) 416
BspANI GGCC 2 cut(s) 307, 468
BspCNI CTCAG 1 cut(s) 429
BspHI TCATGA 1 cut(s) 369
BspLI GGNNCC 1 cut(s) 469
BspTNI GGTCTC 1 cut(s) 421
BsrDI GCAATG 1 cut(s) 443
BsrI ACTGG 1 cut(s) 140
BssMI GATC 2 cut(s) 50, 409
BssSI CACGAG 1 cut(s) 286
Bst2BI CACGAG 1 cut(s) 286
Bst2UI CCWGG 1 cut(s) 18
BstC8I GCNNGC 2 cut(s) 380, 466
BstDEI CTNAG 1 cut(s) 416
BstF5I GGATG 1 cut(s) 211
BstKTI GATC 2 cut(s) 53, 412
BstMAI GTCTC 2 cut(s) 148, 421
BstMBI GATC 2 cut(s) 50, 409
BstNI CCWGG 1 cut(s) 18
BstNSI RCATGY 1 cut(s) 378
BstSCI CCNGG 1 cut(s) 16
BstX2I RGATCY 1 cut(s) 50
BstYI RGATCY 1 cut(s) 50
BsuRI GGCC 2 cut(s) 307, 468
BtsCI GGATG 1 cut(s) 211
BtsI GCAGTG 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 247
Cac8I GCNNGC 2 cut(s) 380, 466
CciI TCATGA 1 cut(s) 369
Cfr13I GGNCC 1 cut(s) 467
CviAII CATG 4 cut(s) 237, 344, 370, 375
DdeI CTNAG 1 cut(s) 416
DpnI GATC 2 cut(s) 52, 411
DpnII GATC 2 cut(s) 50, 409
Eco31I GGTCTC 1 cut(s) 421
Eco32I GATATC 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 210
EcoRII CCWGG 1 cut(s) 16
EcoRV GATATC 1 cut(s) 79
FaeI CATG 4 cut(s) 240, 347, 373, 378
FatI CATG 4 cut(s) 236, 343, 369, 374
FokI GGATG 1 cut(s) 198
FspBI CTAG 2 cut(s) 48, 257
HaeIII GGCC 2 cut(s) 307, 468
HapII CCGG 1 cut(s) 10
Hin1II CATG 4 cut(s) 240, 347, 373, 378
HinfI GANTC 4 cut(s) 136, 181, 337, 366
HpaII CCGG 1 cut(s) 10
Hpy166II GTNNAC 2 cut(s) 245, 283
Hpy188I TCNGA 2 cut(s) 190, 336
Hpy188III TCNNGA 3 cut(s) 170, 370, 407
Hpy8I GTNNAC 2 cut(s) 245, 283
HpyAV CCTTC 3 cut(s) 262, 318, 441
HpyCH4V TGCA 4 cut(s) 98, 240, 403, 448
HpyF3I CTNAG 1 cut(s) 416
Hsp92II CATG 4 cut(s) 240, 347, 373, 378
Kzo9I GATC 2 cut(s) 50, 409
LpnPI CCDG 9 cut(s) 3, 23, 30, 131, 153, 155, 392, 446, 450
LweI GCATC 2 cut(s) 234, 412
MaeI CTAG 2 cut(s) 48, 257
MalI GATC 2 cut(s) 52, 411
MboI GATC 2 cut(s) 50, 409
MboII GAAGA 2 cut(s) 203, 206
MflI RGATCY 1 cut(s) 50
MluCI AATT 4 cut(s) 21, 173, 197, 397
MlyI GAGTC 3 cut(s) 190, 346, 360
MnlI CCTC 3 cut(s) 171, 351, 356
MseI TTAA 1 cut(s) 275
MspI CCGG 1 cut(s) 10
MspR9I CCNGG 1 cut(s) 18
MvaI CCWGG 1 cut(s) 18
NdeII GATC 2 cut(s) 50, 409
NlaIII CATG 4 cut(s) 240, 347, 373, 378
NlaIV GGNNCC 1 cut(s) 469
NspI RCATGY 1 cut(s) 378
PagI TCATGA 1 cut(s) 369
PfeI GAWTC 1 cut(s) 136
PflMI CCANNNNNTGG 1 cut(s) 221
PleI GAGTC 3 cut(s) 189, 345, 360
PpsI GAGTC 3 cut(s) 189, 345, 360
Psp6I CCWGG 1 cut(s) 16
PspGI CCWGG 1 cut(s) 16
PspN4I GGNNCC 1 cut(s) 469
PspPI GGNCC 1 cut(s) 467
PsuI RGATCY 1 cut(s) 50
SaqAI TTAA 1 cut(s) 275
Sau3AI GATC 2 cut(s) 50, 409
Sau96I GGNCC 1 cut(s) 467
SchI GAGTC 3 cut(s) 190, 346, 360
ScrFI CCNGG 1 cut(s) 18
SetI ASST 6 cut(s) 74, 254, 359, 384, 422, 433
SfaNI GCATC 2 cut(s) 234, 412
Sse9I AATT 4 cut(s) 21, 173, 197, 397
SspMI CTAG 2 cut(s) 48, 257
StyD4I CCNGG 1 cut(s) 16
TasI AATT 4 cut(s) 21, 173, 197, 397
TfiI GAWTC 1 cut(s) 136
Tru1I TTAA 1 cut(s) 275
Tru9I TTAA 1 cut(s) 275
TscAI CASTG 1 cut(s) 247
TspDTI ATGAA 1 cut(s) 137
TspRI CASTG 1 cut(s) 247
Van91I CCANNNNNTGG 1 cut(s) 221
XapI RAATTY 3 cut(s) 21, 197, 397
XceI RCATGY 1 cut(s) 378
XspI CTAG 2 cut(s) 48, 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.