Rorug02G0251100

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000092
Physical Location & Seq
Forward (+)
26164106 .. 26168876
4771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0251100.1

Sequence Viewer

Length: 1347 bp
ATGGCCAAGATCCAAACCACCAAGAAGCGCAGGCTCGTCAAAACCGCCGACAAAAACCTCGACAAAACCCCCAAAGCCCCGAAACTCGAACCAGAACAAGAACAAGAACAAGAACCAGAACCAGAACACGAACACAACGACGACCTCCGCCGCAAACAGCCCCAAACCGGGTCGGACTCGGACTCGGACTCCGACTCGGACTCCGACCCGGAGACCCTGTCCCAGCTCCTGGAGCCCTACTCCAAGGAGCAGCTCATCTCCCTCATAACCGACGCCGCCTCCAACGACTCCTCCCTCTTCAAACGCATCCGCGACGCCGCCGACGCCGACGTCTCGCACCGCAAGATATTCGTCCACGGCCTCGGATGGGACACCACCCGCGAAACCCTAGTCTCCGCCTTCCAGCCCTACGGCGACGTCGAGGACTCCAATCTGGTAATGGACAAGCTCACCGGCAAGACCAAAGGCTACGGCTTCGTCCTCTTCAAGACCCGCCGCGGCGCCCTCAAGGCCTTGAAGGAGCCCAAGAAGAGCATCGGCAACCGCAGCGCCTCCTGCCAGCTGGCCTCGGTGGGCCCGGGGAACAACAATACGGCGGCGCCGTCTTCGTCGTCGAGTGGCGGCGGCCAGTCGGACTCGGCGGGGAGGAAGATTTACGTCAGCGGCGTGCCGCATGAGGCCGAAGCCGAGAAATTGAGGGCTTTGTTTGGGAGATTTGGGGAAATTGAGACCGGGCCGATGGGTTTCGATTCGCAGACCGGGAAGTCTAGAGGTTTTGCTTTGTTCTTGTACAAGAGTGTGGAAGGTGCAAAGAAGGCACTTGAGGAACCGGTGAAGGTGTTTGAAGGGCACCAATTGAACTGCCAGAAGGCCACTGAGGGGTCAAAGAACAAGAATGCCGTGGCGCCGGCACAGCAGCAGACGCAGGCTCCGCCACTGGCGGCGGTACCCGGGGCGCAGAATATGGCGTTTTTCGGACAGTACCCGGGATTGAATCCGTTGTATGGTGGATTGATGACCAATGTAGGAGGTGCATTGGTTCCTGGGTCTGGTAACCCGGCTATGATGGCCCGGCCGTTGAACCCGGGTTTACTGGCGGGGGCATTGAACCCTGGTGTGTTTCCAGCTGGACAGTATGGTCAGGTGGGTGCTGGTGTTGGTGGGTTTGGTGGTGTGTCTCATGGGATGGGAAGTTTCGGTGGGGGAGGCTCGTTGCTTGGCGCATACGGGTCAATTGCACCGCTTCCTGCAATGCAGAGTCTGCAGCATGTTTATCCAAGTTCACAGACGGGGCAGACGGCTACAGTTAGGCCTCAGGGGAGTAACGGGTACCAACCGTATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

448

Amino Acids

47.27

Weight (kDa)

8.27

Isoelectric Point (pI)

43.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 116 - 182 2.2e-15 RNA recognition motif
RRM_1 PF00076 218 - 286 1e-09 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000092)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21210 AT2G21210 AT3G20220 AT4G34780 AT4G38840
fragaria_vesca FvH4_2g10810 FvH4_2g10820 FvH4_2g10850 FvH4_2g10870 FvH4_3g13730 FvH4_5g22620 FvH4_5g22660 FvH4_5g22690 FvH4_5g22700 FvH4_5g22780 FvH4_5g22790 FvH4_5g22810 FvH4_5g22821 FvH4_5g22822 FvH4_5g24600 FvH4_5g24720
malus_domestica MD05G1051600.v1.1 MD05G1051700.v1.1 MD05G1051800.v1.1 MD05G1052000.v1.1 MD05G1052100.v1.1 MD05G1052200.v1.1 MD05G1052300.v1.1 MD05G1052400.v1.1 MD05G1113300.v1.1 MD10G1059200.v1.1 MD10G1059500.v1.1 MD10G1059600.v1.1 MD10G1059700.v1.1 MD10G1059800.v1.1 MD10G1060100.v1.1 MD10G1060200.v1.1 MD10G1060300.v1.1 MD10G1060400.v1.1 MD10G1060500.v1.1 MD10G1060600.v1.1 MD10G1060700.v1.1 MD10G1060800.v1.1 MD10G1060900.v1.1 MD10G1061000.v1.1 MD10G1061100.v1.1
prunus_persica Prupe.8G078600_v2.0.a1 Prupe.8G078700_v2.0.a1 Prupe.8G078900_v2.0.a1 Prupe.8G079000_v2.0.a1 Prupe.8G079100_v2.0.a1 Prupe.8G079200_v2.0.a1 Prupe.8G079400_v2.0.a1 Prupe.8G079500_v2.0.a1 Prupe.8G079600_v2.0.a1 Prupe.8G079700_v2.0.a1 Prupe.8G079900_v2.0.a1 Prupe.8G080000_v2.0.a1 Prupe.8G080100_v2.0.a1 Prupe.8G080200_v2.0.a1 Prupe.8G080300_v2.0.a1 Prupe.8G080500_v2.0.a1 Prupe.8G080600_v2.0.a1 Prupe.8G080700_v2.0.a1 Prupe.8G080800_v2.0.a1 Prupe.8G081000_v2.0.a1 Prupe.8G081100_v2.0.a1 Prupe.8G081300_v2.0.a1 Prupe.8G081500_v2.0.a1 Prupe.8G081700_v2.0.a1 Prupe.8G157700_v2.0.a1
pyrus_communis pycom05g04350 pycom05g04390 pycom05g04400 pycom05g04410 pycom10g04550 pycom10g04560 pycom10g04570 pycom10g04580 pycom10g04590 pycom10g04600 pycom10g04610 pycom10g04630 pycom10g04640 pycom10g04650 pycom10g04660 pycom10g04680 pycom10g10040
rosa_chinensis RchiOBHm_Chr0c32g0501561 RchiOBHm_Chr2g0124401 RchiOBHm_Chr2g0124451 RchiOBHm_Chr2g0124461 RchiOBHm_Chr2g0124531 RchiOBHm_Chr2g0124561 RchiOBHm_Chr3g0483671 RchiOBHm_Chr3g0483711 RchiOBHm_Chr5g0056801 RchiOBHm_Chr5g0056821 RchiOBHm_Chr5g0056831 RchiOBHm_Chr5g0056841 RchiOBHm_Chr5g0059921 RchiOBHm_Chr6g0268901 RchiOBHm_Chr6g0268941 RchiOBHm_Chr6g0268951 RchiOBHm_Chr6g0268961 RchiOBHm_Chr7g0210461 RchiOBHm_Chr7g0210481 RchiOBHm_Chr7g0210491 RchiOBHm_Chr7g0210511 RchiOBHm_Chr7g0210531 RchiOBHm_Chr7g0210621 RchiOBHm_Chr7g0210641 RchiOBHm_Chr7g0210651 RchiOBHm_Chr7g0210661 RchiOBHm_Chr7g0210711 RchiOBHm_Chr7g0210801 RchiOBHm_Chr7g0210831 RchiOBHm_Chr7g0210851 RchiOBHm_Chr7g0210871 RchiOBHm_Chr7g0210881 RchiOBHm_Chr7g0210891 RchiOBHm_Chr7g0211121 RchiOBHm_Chr7g0211131 RchiOBHm_Chr7g0211151 RchiOBHm_Chr7g0211501 RchiOBHm_Chr7g0211511
rosa_laevigata RLG00000003016 RLG00000003020 RLG00000003021 RLG00000003031 RLG00000003032 RLG00000003033 RLG00000003034 RLG00000003040 RLG00000003041 RLG00000018801 RLG00000035128 RLG00000035129
rosa_multiflora Rmu_co8425977.1_g000001 Rmu_sc0001081.1_g000010 Rmu_sc0001081.1_g000011 Rmu_sc0001303.1_g000001 Rmu_sc0001303.1_g000002 Rmu_sc0001303.1_g000004 Rmu_sc0001303.1_g000007 Rmu_sc0001460.1_g000030 Rmu_sc0001460.1_g000035 Rmu_sc0001460.1_g000041 Rmu_sc0001460.1_g000048 Rmu_sc0002755.1_g000005 Rmu_sc0002755.1_g000011 Rmu_sc0002755.1_g000017 Rmu_sc0002755.1_g000027 Rmu_sc0003765.1_g000020 Rmu_sc0003765.1_g000042 Rmu_sc0003765.1_g000043 Rmu_sc0003765.1_g000048 Rmu_sc0003765.1_g000057 Rmu_sc0003765.1_g000058 Rmu_sc0003807.1_g000013 Rmu_sc0003807.1_g000014 Rmu_sc0003807.1_g000015 Rmu_sc0003807.1_g000018 Rmu_sc0003907.1_g000001 Rmu_sc0005302.1_g000002 Rmu_sc0005302.1_g000003 Rmu_sc0005696.1_g000001 Rmu_sc0005844.1_g000001 Rmu_sc0005844.1_g000002 Rmu_sc0005844.1_g000003 Rmu_sc0008289.1_g000006 Rmu_sc0008289.1_g000008 Rmu_sc0008289.1_g000009 Rmu_sc0008289.1_g000014 Rmu_sc0010535.1_g000012 Rmu_sc0010535.1_g000013 Rmu_sc0010535.1_g000014 Rmu_sc0010535.1_g000015 Rmu_sc0011084.1_g000001 Rmu_sc0011691.1_g000001 Rmu_sc0017239.1_g000001 Rmu_sc0018437.1_g000009 Rmu_sc0018662.1_g000001 Rmu_sc0018662.1_g000003 Rmu_sc0020409.1_g000001 Rmu_sc0024576.1_g000001 Rmu_sc0034951.1_g000001
rosa_roxburghii Rroxscaffold_1G00023480 Rroxscaffold_1G00023490 Rroxscaffold_1G00023570 Rroxscaffold_2G00119860 Rroxscaffold_2G00119910 Rroxscaffold_3G00247990 Rroxscaffold_3G00248000 Rroxscaffold_3G00248010 Rroxscaffold_3G00248060 Rroxscaffold_3G00248070 Rroxscaffold_3G00248090 Rroxscaffold_3G00248100 Rroxscaffold_3G00248210 Rroxscaffold_3G00248230 Rroxscaffold_3G00248240 Rroxscaffold_3G00248270 Rroxscaffold_3G00248290
rosa_rugosa Rorug02G0251000.1 Rorug02G0251100 Rorug02G0251100 Rorug02G0251200 Rorug02G0251300 Rorug05G0302000 Rorug05G0302100 Rorug05G0302400 Rorug05G0302500 Rorug06G0043500 Rorug06G0043600 Rorug06G0043600 Rorug07G0121600 Rorug07G0121700 Rorug07G0121800 Rorug07G0121900 Rorug07G0122300 Rorug07G0122400 Rorug07G0122500 Rorug07G0122600 Rorug07G0122700 Rorug07G0122700 Rorug07G0123100 Rorug07G0123200 Rorug07G0123300 Rorug07G0123600 Rorug07G0123700 Rorug07G0124200 Rorug07G0124300 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124600 Rorug07G0124700
rosa_wichuraiana Rw0G021160 Rw0G021170 Rw2G024970 Rw2G024980 Rw2G025000 Rw2G025020 Rw2G025030 Rw2G025040 Rw2G025050 Rw3G023170 Rw3G023180 Rw5G034930 Rw5G034940 Rw5G034960 Rw5G035050 Rw5G035060 Rw5G035070 Rw6G014100 Rw6G014110 Rw6G014130 Rw6G014140 Rw6G014150 Rw7G021690 Rw7G021700 Rw7G021710 Rw7G021720 Rw7G021740 Rw7G021750 Rw7G021760 Rw7G021770 Rw7G021790 Rw7G021800 Rw7G021810 Rw7G021820 Rw7G021900 Rw7G021910 Rw7G021920 Rw7G021930 Rw7G021940 Rw7G021950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 329, 763, 1137
AatII GACGTC 2 cut(s) 333, 420
Acc65I GGTACC 2 cut(s) 946, 1329
AccB1I GGYRCC 6 cut(s) 500, 598, 849, 904, 946, 1329
AccB7I CCANNNNNTGG 1 cut(s) 229
AccII CGCG 3 cut(s) 312, 381, 498
AclWI GGATC 1 cut(s) 4
AcoI YGGCCR 3 cut(s) 3, 625, 1073
AcyI GRCGYC 8 cut(s) 273, 315, 324, 330, 417, 501, 599, 905
AfaI GTAC 4 cut(s) 791, 948, 983, 1331
AfiI CCNNNNNNNGG 7 cut(s) 167, 168, 229, 367, 879, 1004, 1049
AgeI ACCGGT 1 cut(s) 829
AgsI TTSAA 8 cut(s) 301, 487, 517, 845, 859, 994, 1081, 1108
AjnI CCWGG 3 cut(s) 228, 1042, 1111
AluBI AGCT 5 cut(s) 226, 253, 448, 562, 1127
AluI AGCT 5 cut(s) 226, 253, 448, 562, 1127
Alw26I GTCTC 5 cut(s) 206, 337, 397, 722, 1182
AlwI GGATC 1 cut(s) 4
AlwNI CAGNNNCTG 2 cut(s) 229, 1261
Ama87I CYCGRG 4 cut(s) 577, 950, 985, 1084
ApaI GGGCCC 1 cut(s) 578
ApeKI GCWGC 4 cut(s) 250, 546, 916, 1264
ArsI GACNNNNNNTTYG 2 cut(s) 375, 407
AsiGI ACCGGT 1 cut(s) 829
Asp718I GGTACC 2 cut(s) 946, 1329
AspLEI GCGC 7 cut(s) 30, 503, 551, 601, 907, 958, 1223
AspS9I GGNCC 4 cut(s) 574, 575, 734, 1069
AsuHPI GGTGA 2 cut(s) 442, 844
AvaI CYCGRG 4 cut(s) 577, 950, 985, 1084
AxyI CCTNAGG 1 cut(s) 1314
BaeGI GKGCMC 2 cut(s) 578, 852
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 6 cut(s) 500, 598, 849, 904, 946, 1329
BanII GRGCYC 3 cut(s) 237, 525, 578
BbsI GAAGAC 1 cut(s) 597
BbvI GCAGC 4 cut(s) 262, 558, 928, 1276
BccI CCATC 4 cut(s) 360, 733, 1060, 1180
BceAI ACGGC 8 cut(s) 373, 427, 487, 586, 609, 884, 1060, 1314
BcgI CGANNNNNNTGC 2 cut(s) 331, 365
BciT130I CCWGG 3 cut(s) 230, 1044, 1113
BcoDI GTCTC 5 cut(s) 206, 337, 397, 722, 1182
BfaI CTAG 2 cut(s) 389, 768
BfmI CTRYAG 2 cut(s) 1262, 1302
BfoI RGCGCY 4 cut(s) 504, 552, 602, 908
BglI GCCNNNNNGGC 1 cut(s) 509
BmeT110I CYCGRG 4 cut(s) 577, 950, 985, 1084
BmgT120I GGNCC 4 cut(s) 574, 575, 734, 1069
BmsI GCATC 2 cut(s) 315, 543
BpiI GAAGAC 1 cut(s) 597
BplI GAGNNNNNCTC 2 cut(s) 224, 256
BpmI CTGGAG 1 cut(s) 251
BpuEI CTTGAG 2 cut(s) 491, 842
BsaHI GRCGYC 8 cut(s) 273, 315, 324, 330, 417, 501, 599, 905
BsaI GGTCTC 2 cut(s) 206, 722
BsaWI WCCGGW 1 cut(s) 829
Bsc4I CCNNNNNNNGG 7 cut(s) 167, 168, 229, 367, 879, 1004, 1049
Bse118I RCCGGY 3 cut(s) 452, 829, 907
Bse1I ACTGG 3 cut(s) 628, 942, 1098
Bse21I CCTNAGG 1 cut(s) 1314
Bse3DI GCAATG 1 cut(s) 1257
BseBI CCWGG 3 cut(s) 230, 1044, 1113
BseGI GGATG 3 cut(s) 306, 371, 1191
BseLI CCNNNNNNNGG 7 cut(s) 167, 168, 229, 367, 879, 1004, 1049
BseMI GCAATG 1 cut(s) 1257
BseMII CTCAG 2 cut(s) 867, 1328
BseNI ACTGG 3 cut(s) 628, 942, 1098
BseRI GAGGAG 1 cut(s) 280
BseSI GKGCMC 2 cut(s) 578, 852
BseX3I CGGCCG 1 cut(s) 1073
BseXI GCAGC 4 cut(s) 262, 558, 928, 1276
BseYI CCCAGC 1 cut(s) 222
Bsh1236I CGCG 3 cut(s) 312, 381, 498
Bsh1285I CGRYCG 1 cut(s) 1076
BshNI GGYRCC 6 cut(s) 500, 598, 849, 904, 946, 1329
BshTI ACCGGT 1 cut(s) 829
BsiEI CGRYCG 1 cut(s) 1076
BsiHKCI CYCGRG 4 cut(s) 577, 950, 985, 1084
BslFI GGGAC 2 cut(s) 205, 383
BslI CCNNNNNNNGG 7 cut(s) 167, 168, 229, 367, 879, 1004, 1049
BsmAI GTCTC 5 cut(s) 206, 337, 397, 722, 1182
BsmBI CGTCTC 1 cut(s) 337
BsmFI GGGAC 2 cut(s) 205, 383
BsmI GAATGC 1 cut(s) 901
Bso31I GGTCTC 2 cut(s) 206, 722
BsoBI CYCGRG 4 cut(s) 577, 950, 985, 1084
Bsp120I GGGCCC 1 cut(s) 574
Bsp1286I GDGCHC 4 cut(s) 237, 525, 578, 852
Bsp1407I TGTACA 1 cut(s) 789
Bsp143I GATC 1 cut(s) 9
BspCNI CTCAG 2 cut(s) 868, 1327
BspFNI CGCG 3 cut(s) 312, 381, 498
BspMAI CTGCAG 1 cut(s) 1266
BspPI GGATC 1 cut(s) 4
BspQI GCTCTTC 1 cut(s) 524
BspT107I GGYRCC 6 cut(s) 500, 598, 849, 904, 946, 1329
BspTNI GGTCTC 2 cut(s) 206, 722
BsrDI GCAATG 1 cut(s) 1257
BsrFI RCCGGY 3 cut(s) 452, 829, 907
BsrGI TGTACA 1 cut(s) 789
BsrI ACTGG 3 cut(s) 628, 942, 1098
BssAI RCCGGY 3 cut(s) 452, 829, 907
BssMI GATC 1 cut(s) 9
BssNI GRCGYC 8 cut(s) 273, 315, 324, 330, 417, 501, 599, 905
BssT1I CCWWGG 1 cut(s) 243
Bst2UI CCWGG 3 cut(s) 230, 1044, 1113
Bst4CI ACNGT 4 cut(s) 981, 1134, 1306, 1338
Bst6I CTCTTC 3 cut(s) 302, 488, 524
BstACI GRCGYC 8 cut(s) 273, 315, 324, 330, 417, 501, 599, 905
BstAPI GCANNNNNTGC 1 cut(s) 1261
BstAUI TGTACA 1 cut(s) 789
BstC8I GCNNGC 6 cut(s) 32, 560, 564, 668, 909, 927
BstDEI CTNAG 2 cut(s) 876, 1314
BstDSI CCRYGG 3 cut(s) 355, 496, 900
BstEII GGTNACC 1 cut(s) 1052
BstF5I GGATG 3 cut(s) 306, 371, 1191
BstFNI CGCG 3 cut(s) 312, 381, 498
BstH2I RGCGCY 4 cut(s) 504, 552, 602, 908
BstHHI GCGC 7 cut(s) 30, 503, 551, 601, 907, 958, 1223
BstKTI GATC 1 cut(s) 12
BstMAI GTCTC 5 cut(s) 206, 337, 397, 722, 1182
BstMBI GATC 1 cut(s) 9
BstMCI CGRYCG 1 cut(s) 1076
BstNI CCWGG 3 cut(s) 230, 1044, 1113
BstNSI RCATGY 1 cut(s) 1271
BstPI GGTNACC 1 cut(s) 1052
BstSFI CTRYAG 2 cut(s) 1262, 1302
BstSLI GKGCMC 2 cut(s) 578, 852
BstUI CGCG 3 cut(s) 312, 381, 498
BstV1I GCAGC 4 cut(s) 262, 558, 928, 1276
BstV2I GAAGAC 1 cut(s) 597
BstX2I RGATCY 1 cut(s) 9
BstYI RGATCY 1 cut(s) 9
BstZI CGGCCG 1 cut(s) 1073
Bsu36I CCTNAGG 1 cut(s) 1314
BtgI CCRYGG 3 cut(s) 355, 496, 900
BtsCI GGATG 3 cut(s) 306, 371, 1191
BtsIMutI CAGTG 2 cut(s) 873, 935
Cac8I GCNNGC 6 cut(s) 32, 560, 564, 668, 909, 927
CaiI CAGNNNCTG 2 cut(s) 229, 1261
CfoI GCGC 7 cut(s) 30, 503, 551, 601, 907, 958, 1223
Cfr10I RCCGGY 3 cut(s) 452, 829, 907
Cfr13I GGNCC 4 cut(s) 574, 575, 734, 1069
Cfr42I CCGCGG 1 cut(s) 499
Cfr9I CCCGGG 4 cut(s) 577, 950, 985, 1084
CseI GACGC 4 cut(s) 281, 323, 332, 931
Csp6I GTAC 4 cut(s) 790, 947, 982, 1330
CspAI ACCGGT 1 cut(s) 829
CviAII CATG 3 cut(s) 674, 1181, 1268
CviQI GTAC 4 cut(s) 790, 947, 982, 1330
DdeI CTNAG 2 cut(s) 876, 1314
DinI GGCGCC 3 cut(s) 502, 600, 906
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
DrdI GACNNNNNNGTC 3 cut(s) 329, 763, 1137
DseDI GACNNNNNNGTC 3 cut(s) 329, 763, 1137
EaeI YGGCCR 3 cut(s) 3, 625, 1073
EagI CGGCCG 1 cut(s) 1073
Eam1104I CTCTTC 3 cut(s) 302, 488, 524
EarI CTCTTC 3 cut(s) 302, 488, 524
EciI GGCGGA 3 cut(s) 137, 385, 921
EclXI CGGCCG 1 cut(s) 1073
Eco130I CCWWGG 1 cut(s) 243
Eco147I AGGCCT 2 cut(s) 512, 1312
Eco24I GRGCYC 3 cut(s) 237, 525, 578
Eco31I GGTCTC 2 cut(s) 206, 722
Eco52I CGGCCG 1 cut(s) 1073
Eco81I CCTNAGG 1 cut(s) 1314
Eco88I CYCGRG 4 cut(s) 577, 950, 985, 1084
Eco91I GGTNACC 1 cut(s) 1052
EcoO65I GGTNACC 1 cut(s) 1052
EcoRII CCWGG 3 cut(s) 228, 1042, 1111
EcoT14I CCWWGG 1 cut(s) 243
EcoT38I GRGCYC 3 cut(s) 237, 525, 578
EgeI GGCGCC 3 cut(s) 502, 600, 906
EheI GGCGCC 3 cut(s) 502, 600, 906
ErhI CCWWGG 1 cut(s) 243
Esp3I CGTCTC 1 cut(s) 337
FaeI CATG 3 cut(s) 677, 1184, 1271
FaqI GGGAC 2 cut(s) 205, 383
FatI CATG 3 cut(s) 673, 1180, 1267
FauI CCCGC 4 cut(s) 386, 500, 634, 1090
FokI GGATG 3 cut(s) 293, 378, 1198
FriOI GRGCYC 3 cut(s) 237, 525, 578
FspBI CTAG 2 cut(s) 389, 768
GlaI GCGC 7 cut(s) 29, 502, 550, 600, 906, 957, 1222
GsaI CCCAGC 1 cut(s) 226
GsuI CTGGAG 1 cut(s) 251
HaeII RGCGCY 4 cut(s) 504, 552, 602, 908
HgaI GACGC 4 cut(s) 281, 323, 332, 931
HhaI GCGC 7 cut(s) 30, 503, 551, 601, 907, 958, 1223
Hin1I GRCGYC 8 cut(s) 273, 315, 324, 330, 417, 501, 599, 905
Hin1II CATG 3 cut(s) 677, 1184, 1271
Hin6I GCGC 7 cut(s) 28, 501, 549, 599, 905, 956, 1221
HinP1I GCGC 7 cut(s) 28, 501, 549, 599, 905, 956, 1221
HphI GGTGA 2 cut(s) 442, 844
Hpy166II GTNNAC 3 cut(s) 355, 1091, 1283
Hpy188I TCNGA 9 cut(s) 175, 181, 187, 193, 199, 205, 365, 634, 977
Hpy188III TCNNGA 2 cut(s) 487, 768
Hpy8I GTNNAC 3 cut(s) 355, 1091, 1283
Hpy99I CGWCG 9 cut(s) 143, 275, 317, 326, 332, 419, 422, 613, 616
HpyAV CCTTC 7 cut(s) 409, 511, 797, 808, 829, 839, 862
HpyCH4III ACNGT 4 cut(s) 981, 1134, 1306, 1338
HpyCH4IV ACGT 3 cut(s) 330, 417, 657
HpyCH4V TGCA 6 cut(s) 809, 1034, 1238, 1250, 1255, 1264
HpyF3I CTNAG 2 cut(s) 876, 1314
HpySE526I ACGT 3 cut(s) 330, 417, 657
Hsp92I GRCGYC 8 cut(s) 273, 315, 324, 330, 417, 501, 599, 905
Hsp92II CATG 3 cut(s) 677, 1184, 1271
HspAI GCGC 7 cut(s) 28, 501, 549, 599, 905, 956, 1221
KasI GGCGCC 3 cut(s) 500, 598, 904
KpnI GGTACC 2 cut(s) 950, 1333
KroI GCCGGC 1 cut(s) 907
KroNI GCCGGC 1 cut(s) 909
KspI CCGCGG 1 cut(s) 499
Kzo9I GATC 1 cut(s) 9
LguI GCTCTTC 1 cut(s) 524
LmnI GCTCC 5 cut(s) 231, 232, 247, 520, 934
Lsp1109I GCAGC 4 cut(s) 262, 558, 928, 1276
LweI GCATC 2 cut(s) 315, 543
MaeI CTAG 2 cut(s) 389, 768
MaeII ACGT 3 cut(s) 330, 417, 657
MaeIII GTNAC 2 cut(s) 1052, 1322
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MboII GAAGA 5 cut(s) 289, 475, 541, 597, 661
MfeI CAATTG 2 cut(s) 854, 1233
MflI RGATCY 1 cut(s) 9
MhlI GDGCHC 4 cut(s) 237, 525, 578, 852
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 692, 723, 854, 1233
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 3 cut(s) 501, 599, 905
MlyI GAGTC 9 cut(s) 170, 176, 182, 188, 194, 281, 419, 629, 1267
MmeI TCCRAC 5 cut(s) 153, 216, 228, 306, 612
Mox20I TGGCCA 1 cut(s) 5
MroNI GCCGGC 1 cut(s) 907
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 4 cut(s) 498, 562, 663, 1127
MunI CAATTG 2 cut(s) 854, 1233
Mva1269I GAATGC 1 cut(s) 901
MvaI CCWGG 3 cut(s) 230, 1044, 1113
MvnI CGCG 3 cut(s) 312, 381, 498
NaeI GCCGGC 1 cut(s) 909
NarI GGCGCC 3 cut(s) 501, 599, 905
NdeII GATC 1 cut(s) 9
NgoMIV GCCGGC 1 cut(s) 907
NlaIII CATG 3 cut(s) 677, 1184, 1271
NmeAIII GCCGAG 2 cut(s) 617, 712
NspI RCATGY 1 cut(s) 1271
PceI AGGCCT 2 cut(s) 512, 1312
PciSI GCTCTTC 1 cut(s) 524
PcsI WCGNNNNNNNCGW 4 cut(s) 135, 417, 599, 663
PctI GAATGC 1 cut(s) 901
PdiI GCCGGC 1 cut(s) 909
PfeI GAWTC 2 cut(s) 749, 994
PflFI GACNNNGTC 1 cut(s) 217
PflMI CCANNNNNTGG 1 cut(s) 229
PfoI TCCNGGA 1 cut(s) 228
PinAI ACCGGT 1 cut(s) 829
PleI GAGTC 9 cut(s) 170, 176, 182, 188, 194, 281, 419, 629, 1266
PluTI GGCGCC 3 cut(s) 504, 602, 908
PpsI GAGTC 9 cut(s) 170, 176, 182, 188, 194, 281, 419, 629, 1266
Psp6I CCWGG 3 cut(s) 228, 1042, 1111
PspEI GGTNACC 1 cut(s) 1052
PspFI CCCAGC 1 cut(s) 222
PspGI CCWGG 3 cut(s) 228, 1042, 1111
PspOMI GGGCCC 1 cut(s) 574
PspPI GGNCC 4 cut(s) 574, 575, 734, 1069
PstI CTGCAG 1 cut(s) 1266
PstNI CAGNNNCTG 2 cut(s) 229, 1261
PsuI RGATCY 1 cut(s) 9
PsyI GACNNNGTC 1 cut(s) 217
PvuII CAGCTG 2 cut(s) 562, 1127
RsaI GTAC 4 cut(s) 791, 948, 983, 1331
RsaNI GTAC 4 cut(s) 790, 947, 982, 1330
SacII CCGCGG 1 cut(s) 499
SapI GCTCTTC 1 cut(s) 524
Sau3AI GATC 1 cut(s) 9
Sau96I GGNCC 4 cut(s) 574, 575, 734, 1069
SchI GAGTC 9 cut(s) 170, 176, 182, 188, 194, 281, 419, 629, 1267
SduI GDGCHC 4 cut(s) 237, 525, 578, 852
SfaNI GCATC 2 cut(s) 315, 543
SfcI CTRYAG 2 cut(s) 1262, 1302
SfoI GGCGCC 3 cut(s) 502, 600, 906
Sfr303I CCGCGG 1 cut(s) 499
SgrBI CCGCGG 1 cut(s) 499
SmaI CCCGGG 4 cut(s) 579, 952, 987, 1086
SmlI CTYRAG 2 cut(s) 506, 821
SmoI CTYRAG 2 cut(s) 506, 821
Sse9I AATT 4 cut(s) 692, 723, 854, 1233
SseBI AGGCCT 2 cut(s) 512, 1312
SspDI GGCGCC 3 cut(s) 500, 598, 904
SspMI CTAG 2 cut(s) 389, 768
StuI AGGCCT 2 cut(s) 512, 1312
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 4 cut(s) 981, 1134, 1306, 1338
TaiI ACGT 3 cut(s) 333, 420, 660
TaqI TCGA 5 cut(s) 60, 87, 420, 614, 747
TasI AATT 4 cut(s) 692, 723, 854, 1233
TatI WGTACW 1 cut(s) 789
TfiI GAWTC 2 cut(s) 749, 994
TscAI CASTG 2 cut(s) 880, 942
TseI GCWGC 4 cut(s) 250, 546, 916, 1264
TspGWI ACGGA 1 cut(s) 987
TspMI CCCGGG 4 cut(s) 577, 950, 985, 1084
TspRI CASTG 2 cut(s) 880, 942
Tth111I GACNNNGTC 1 cut(s) 217
Van91I CCANNNNNTGG 1 cut(s) 229
XbaI TCTAGA 1 cut(s) 767
XceI RCATGY 1 cut(s) 1271
XcmI CCANNNNNNNNNTGG 1 cut(s) 436
XmaI CCCGGG 4 cut(s) 577, 950, 985, 1084
XspI CTAG 2 cut(s) 389, 768
ZraI GACGTC 2 cut(s) 331, 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.