FvH4_5g22810

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000092
Physical Location & Seq
Forward (+)
14112281 .. 14114209
1929 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g22810.t1

Sequence Viewer

Length: 528 bp
ATGATAATATCACAGAGGGATCCAACTTCATATTCAAAAAGCATCAACATCTCAGAACATGCTGCTAAGCCAAGAAGAACAAAGAAGAGGCGAAGACATGATTGGTCGTCAATTGAATCAAGCTATGCTGAGGGGAAGCTTCTGTTGGTACCAATTGCATGTGCTTTGAGTAGGAAAACAAACCCATGTGATTTCTCACAAGCTAGTTTTCCTACCTGGAGCCCATCTCAGTGCCTATTCACCAATCATTTCATGTTGCAGATGTATATACAAACCATGGGTTTCCAATTACCACGAAATGCCAGAACAAAGACATCAGATATCCCAAAAGGCTATTTTGCAGTTTATGTTAGAAAGAACCAGAAGAAACGATTTGTGGTTCCAATATCGTATCTGAACCAACCTTTGTTTCTGGATTTGCTGAGTCAGGCTGAAGAAGAATATGGACACCATCATCCAATGGGTGGTATCACAATTCCTTGCAGTCAAGACACCTTCCTTGATCTCACTTTAAGCTTAAGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

176

Amino Acids

20.07

Weight (kDa)

9.56

Isoelectric Point (pI)

53.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 98 - 170 1.8e-21 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000092)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21210 AT2G21210 AT3G20220 AT4G34780 AT4G38840
fragaria_vesca FvH4_2g10810 FvH4_2g10820 FvH4_2g10850 FvH4_2g10870 FvH4_3g13730 FvH4_5g22620 FvH4_5g22660 FvH4_5g22690 FvH4_5g22700 FvH4_5g22780 FvH4_5g22790 FvH4_5g22810 FvH4_5g22821 FvH4_5g22822 FvH4_5g24600 FvH4_5g24720
malus_domestica MD05G1051600.v1.1 MD05G1051700.v1.1 MD05G1051800.v1.1 MD05G1052000.v1.1 MD05G1052100.v1.1 MD05G1052200.v1.1 MD05G1052300.v1.1 MD05G1052400.v1.1 MD05G1113300.v1.1 MD10G1059200.v1.1 MD10G1059500.v1.1 MD10G1059600.v1.1 MD10G1059700.v1.1 MD10G1059800.v1.1 MD10G1060100.v1.1 MD10G1060200.v1.1 MD10G1060300.v1.1 MD10G1060400.v1.1 MD10G1060500.v1.1 MD10G1060600.v1.1 MD10G1060700.v1.1 MD10G1060800.v1.1 MD10G1060900.v1.1 MD10G1061000.v1.1 MD10G1061100.v1.1
prunus_persica Prupe.8G078600_v2.0.a1 Prupe.8G078700_v2.0.a1 Prupe.8G078900_v2.0.a1 Prupe.8G079000_v2.0.a1 Prupe.8G079100_v2.0.a1 Prupe.8G079200_v2.0.a1 Prupe.8G079400_v2.0.a1 Prupe.8G079500_v2.0.a1 Prupe.8G079600_v2.0.a1 Prupe.8G079700_v2.0.a1 Prupe.8G079900_v2.0.a1 Prupe.8G080000_v2.0.a1 Prupe.8G080100_v2.0.a1 Prupe.8G080200_v2.0.a1 Prupe.8G080300_v2.0.a1 Prupe.8G080500_v2.0.a1 Prupe.8G080600_v2.0.a1 Prupe.8G080700_v2.0.a1 Prupe.8G080800_v2.0.a1 Prupe.8G081000_v2.0.a1 Prupe.8G081100_v2.0.a1 Prupe.8G081300_v2.0.a1 Prupe.8G081500_v2.0.a1 Prupe.8G081700_v2.0.a1 Prupe.8G157700_v2.0.a1
pyrus_communis pycom05g04350 pycom05g04390 pycom05g04400 pycom05g04410 pycom10g04550 pycom10g04560 pycom10g04570 pycom10g04580 pycom10g04590 pycom10g04600 pycom10g04610 pycom10g04630 pycom10g04640 pycom10g04650 pycom10g04660 pycom10g04680 pycom10g10040
rosa_chinensis RchiOBHm_Chr0c32g0501561 RchiOBHm_Chr2g0124401 RchiOBHm_Chr2g0124451 RchiOBHm_Chr2g0124461 RchiOBHm_Chr2g0124531 RchiOBHm_Chr2g0124561 RchiOBHm_Chr3g0483671 RchiOBHm_Chr3g0483711 RchiOBHm_Chr5g0056801 RchiOBHm_Chr5g0056821 RchiOBHm_Chr5g0056831 RchiOBHm_Chr5g0056841 RchiOBHm_Chr5g0059921 RchiOBHm_Chr6g0268901 RchiOBHm_Chr6g0268941 RchiOBHm_Chr6g0268951 RchiOBHm_Chr6g0268961 RchiOBHm_Chr7g0210461 RchiOBHm_Chr7g0210481 RchiOBHm_Chr7g0210491 RchiOBHm_Chr7g0210511 RchiOBHm_Chr7g0210531 RchiOBHm_Chr7g0210621 RchiOBHm_Chr7g0210641 RchiOBHm_Chr7g0210651 RchiOBHm_Chr7g0210661 RchiOBHm_Chr7g0210711 RchiOBHm_Chr7g0210801 RchiOBHm_Chr7g0210831 RchiOBHm_Chr7g0210851 RchiOBHm_Chr7g0210871 RchiOBHm_Chr7g0210881 RchiOBHm_Chr7g0210891 RchiOBHm_Chr7g0211121 RchiOBHm_Chr7g0211131 RchiOBHm_Chr7g0211151 RchiOBHm_Chr7g0211501 RchiOBHm_Chr7g0211511
rosa_laevigata RLG00000003016 RLG00000003020 RLG00000003021 RLG00000003031 RLG00000003032 RLG00000003033 RLG00000003034 RLG00000003040 RLG00000003041 RLG00000018801 RLG00000035128 RLG00000035129
rosa_multiflora Rmu_co8425977.1_g000001 Rmu_sc0001081.1_g000010 Rmu_sc0001081.1_g000011 Rmu_sc0001303.1_g000001 Rmu_sc0001303.1_g000002 Rmu_sc0001303.1_g000004 Rmu_sc0001303.1_g000007 Rmu_sc0001460.1_g000030 Rmu_sc0001460.1_g000035 Rmu_sc0001460.1_g000041 Rmu_sc0001460.1_g000048 Rmu_sc0002755.1_g000005 Rmu_sc0002755.1_g000011 Rmu_sc0002755.1_g000017 Rmu_sc0002755.1_g000027 Rmu_sc0003765.1_g000020 Rmu_sc0003765.1_g000042 Rmu_sc0003765.1_g000043 Rmu_sc0003765.1_g000048 Rmu_sc0003765.1_g000057 Rmu_sc0003765.1_g000058 Rmu_sc0003807.1_g000013 Rmu_sc0003807.1_g000014 Rmu_sc0003807.1_g000015 Rmu_sc0003807.1_g000018 Rmu_sc0003907.1_g000001 Rmu_sc0005302.1_g000002 Rmu_sc0005302.1_g000003 Rmu_sc0005696.1_g000001 Rmu_sc0005844.1_g000001 Rmu_sc0005844.1_g000002 Rmu_sc0005844.1_g000003 Rmu_sc0008289.1_g000006 Rmu_sc0008289.1_g000008 Rmu_sc0008289.1_g000009 Rmu_sc0008289.1_g000014 Rmu_sc0010535.1_g000012 Rmu_sc0010535.1_g000013 Rmu_sc0010535.1_g000014 Rmu_sc0010535.1_g000015 Rmu_sc0011084.1_g000001 Rmu_sc0011691.1_g000001 Rmu_sc0017239.1_g000001 Rmu_sc0018437.1_g000009 Rmu_sc0018662.1_g000001 Rmu_sc0018662.1_g000003 Rmu_sc0020409.1_g000001 Rmu_sc0024576.1_g000001 Rmu_sc0034951.1_g000001
rosa_roxburghii Rroxscaffold_1G00023480 Rroxscaffold_1G00023490 Rroxscaffold_1G00023570 Rroxscaffold_2G00119860 Rroxscaffold_2G00119910 Rroxscaffold_3G00247990 Rroxscaffold_3G00248000 Rroxscaffold_3G00248010 Rroxscaffold_3G00248060 Rroxscaffold_3G00248070 Rroxscaffold_3G00248090 Rroxscaffold_3G00248100 Rroxscaffold_3G00248210 Rroxscaffold_3G00248230 Rroxscaffold_3G00248240 Rroxscaffold_3G00248270 Rroxscaffold_3G00248290
rosa_rugosa Rorug02G0251000.1 Rorug02G0251100 Rorug02G0251100 Rorug02G0251200 Rorug02G0251300 Rorug05G0302000 Rorug05G0302100 Rorug05G0302400 Rorug05G0302500 Rorug06G0043500 Rorug06G0043600 Rorug06G0043600 Rorug07G0121600 Rorug07G0121700 Rorug07G0121800 Rorug07G0121900 Rorug07G0122300 Rorug07G0122400 Rorug07G0122500 Rorug07G0122600 Rorug07G0122700 Rorug07G0122700 Rorug07G0123100 Rorug07G0123200 Rorug07G0123300 Rorug07G0123600 Rorug07G0123700 Rorug07G0124200 Rorug07G0124300 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124500 Rorug07G0124600 Rorug07G0124700
rosa_wichuraiana Rw0G021160 Rw0G021170 Rw2G024970 Rw2G024980 Rw2G025000 Rw2G025020 Rw2G025030 Rw2G025040 Rw2G025050 Rw3G023170 Rw3G023180 Rw5G034930 Rw5G034940 Rw5G034960 Rw5G035050 Rw5G035060 Rw5G035070 Rw6G014100 Rw6G014110 Rw6G014130 Rw6G014140 Rw6G014150 Rw7G021690 Rw7G021700 Rw7G021710 Rw7G021720 Rw7G021740 Rw7G021750 Rw7G021760 Rw7G021770 Rw7G021790 Rw7G021800 Rw7G021810 Rw7G021820 Rw7G021900 Rw7G021910 Rw7G021920 Rw7G021930 Rw7G021940 Rw7G021950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 148
AccB1I GGYRCC 1 cut(s) 148
AccB7I CCANNNNNTGG 1 cut(s) 464
AclWI GGATC 2 cut(s) 14, 27
AcuI CTGAAG 1 cut(s) 453
AfaI GTAC 1 cut(s) 150
AfiI CCNNNNNNNGG 1 cut(s) 464
AflII CTTAAG 1 cut(s) 517
AgsI TTSAA 2 cut(s) 36, 116
AjnI CCWGG 1 cut(s) 215
AjuI GAANNNNNNNTTGG 8 cut(s) 16, 48, 85, 117, 128, 160, 393, 425
AluBI AGCT 4 cut(s) 123, 139, 203, 516
AluI AGCT 4 cut(s) 123, 139, 203, 516
AlwI GGATC 2 cut(s) 14, 27
ApeKI GCWGC 1 cut(s) 62
Asp718I GGTACC 1 cut(s) 148
AsuHPI GGTGA 1 cut(s) 232
BamHI GGATCC 1 cut(s) 19
BanI GGYRCC 1 cut(s) 148
BanII GRGCYC 1 cut(s) 224
BbsI GAAGAC 1 cut(s) 100
BbvCI CCTCAGC 1 cut(s) 129
BbvI GCAGC 1 cut(s) 49
BccI CCATC 2 cut(s) 232, 459
BciT130I CCWGG 1 cut(s) 217
BfaI CTAG 1 cut(s) 204
BfrI CTTAAG 1 cut(s) 517
BisI GCNGC 1 cut(s) 63
BlpI GCTNAGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 64
Bme1390I CCNGG 1 cut(s) 217
BmiI GGNNCC 4 cut(s) 21, 150, 221, 381
BmrFI CCNGG 1 cut(s) 217
BmsI GCATC 1 cut(s) 51
BpiI GAAGAC 1 cut(s) 100
BplI GAGNNNNNCTC 2 cut(s) 211, 243
BpmI CTGGAG 1 cut(s) 238
Bpu10I CCTNAGC 1 cut(s) 129
Bpu1102I GCTNAGC 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 276
Bsc4I CCNNNNNNNGG 1 cut(s) 464
BseBI CCWGG 1 cut(s) 217
BseDI CCNNGG 1 cut(s) 276
BseGI GGATG 1 cut(s) 454
BseLI CCNNNNNNNGG 1 cut(s) 464
BseMII CTCAG 4 cut(s) 66, 120, 242, 413
BseXI GCAGC 1 cut(s) 49
BshNI GGYRCC 1 cut(s) 148
BslI CCNNNNNNNGG 1 cut(s) 464
Bsp1286I GDGCHC 1 cut(s) 224
Bsp143I GATC 2 cut(s) 19, 502
Bsp1720I GCTNAGC 1 cut(s) 66
Bsp19I CCATGG 1 cut(s) 276
BspCNI CTCAG 4 cut(s) 65, 121, 241, 414
BspLI GGNNCC 4 cut(s) 21, 150, 221, 381
BspPI GGATC 2 cut(s) 14, 27
BspT107I GGYRCC 1 cut(s) 148
BspTI CTTAAG 1 cut(s) 517
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 2 cut(s) 19, 502
BssT1I CCWWGG 1 cut(s) 276
Bst2UI CCWGG 1 cut(s) 217
Bst6I CTCTTC 1 cut(s) 80
BstAFI CTTAAG 1 cut(s) 517
BstDEI CTNAG 5 cut(s) 52, 66, 129, 228, 422
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 1 cut(s) 454
BstKTI GATC 2 cut(s) 22, 505
BstMBI GATC 2 cut(s) 19, 502
BstNI CCWGG 1 cut(s) 217
BstNSI RCATGY 2 cut(s) 62, 162
BstSCI CCNGG 1 cut(s) 215
BstV1I GCAGC 1 cut(s) 49
BstV2I GAAGAC 1 cut(s) 100
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
BtgI CCRYGG 1 cut(s) 276
BtsCI GGATG 1 cut(s) 454
BtsIMutI CAGTG 1 cut(s) 236
Csp6I GTAC 1 cut(s) 149
CviAII CATG 6 cut(s) 59, 98, 159, 186, 253, 277
CviJI RGCY 8 cut(s) 70, 123, 139, 203, 222, 333, 431, 516
CviKI_1 RGCY 8 cut(s) 70, 123, 139, 203, 222, 333, 431, 516
CviQI GTAC 1 cut(s) 149
DdeI CTNAG 5 cut(s) 52, 66, 129, 228, 422
DpnI GATC 2 cut(s) 21, 504
DpnII GATC 2 cut(s) 19, 502
Eam1104I CTCTTC 1 cut(s) 80
EarI CTCTTC 1 cut(s) 80
Eco130I CCWWGG 1 cut(s) 276
Eco24I GRGCYC 1 cut(s) 224
Eco32I GATATC 1 cut(s) 322
Eco57I CTGAAG 1 cut(s) 453
EcoRII CCWGG 1 cut(s) 215
EcoRV GATATC 1 cut(s) 322
EcoT14I CCWWGG 1 cut(s) 276
EcoT38I GRGCYC 1 cut(s) 224
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 6 cut(s) 62, 101, 162, 189, 256, 280
FatI CATG 6 cut(s) 58, 97, 158, 185, 252, 276
Fnu4HI GCNGC 1 cut(s) 63
FokI GGATG 1 cut(s) 441
FriOI GRGCYC 1 cut(s) 224
Fsp4HI GCNGC 1 cut(s) 63
FspBI CTAG 1 cut(s) 204
GluI GCNGC 1 cut(s) 63
GsuI CTGGAG 1 cut(s) 238
Hin1II CATG 6 cut(s) 62, 101, 162, 189, 256, 280
HindIII AAGCTT 2 cut(s) 137, 514
HinfI GANTC 2 cut(s) 116, 424
HphI GGTGA 1 cut(s) 232
Hpy188I TCNGA 3 cut(s) 55, 319, 396
Hpy188III TCNNGA 2 cut(s) 413, 488
HpyAV CCTTC 1 cut(s) 505
HpyCH4V TGCA 4 cut(s) 158, 259, 341, 483
HpyF3I CTNAG 5 cut(s) 52, 66, 129, 228, 422
Hsp92II CATG 6 cut(s) 62, 101, 162, 189, 256, 280
KpnI GGTACC 1 cut(s) 152
Kzo9I GATC 2 cut(s) 19, 502
LmnI GCTCC 1 cut(s) 219
LpnPI CCDG 6 cut(s) 202, 229, 316, 374, 398, 413
Lsp1109I GCAGC 1 cut(s) 49
LweI GCATC 1 cut(s) 51
MaeI CTAG 1 cut(s) 204
MalI GATC 2 cut(s) 21, 504
MboI GATC 2 cut(s) 19, 502
MboII GAAGA 6 cut(s) 87, 97, 105, 376, 446, 449
MfeI CAATTG 2 cut(s) 111, 153
MflI RGATCY 1 cut(s) 19
MhlI GDGCHC 1 cut(s) 224
MluCI AATT 4 cut(s) 111, 153, 287, 474
MlyI GAGTC 1 cut(s) 433
MmeI TCCRAC 1 cut(s) 47
MnlI CCTC 3 cut(s) 9, 81, 124
MseI TTAA 2 cut(s) 512, 518
MslI CAYNNNNRTG 1 cut(s) 229
MspCI CTTAAG 1 cut(s) 517
MspR9I CCNGG 1 cut(s) 217
MunI CAATTG 2 cut(s) 111, 153
MvaI CCWGG 1 cut(s) 217
NcoI CCATGG 1 cut(s) 276
NdeII GATC 2 cut(s) 19, 502
NlaIII CATG 6 cut(s) 62, 101, 162, 189, 256, 280
NlaIV GGNNCC 4 cut(s) 21, 150, 221, 381
NspI RCATGY 2 cut(s) 62, 162
PfeI GAWTC 1 cut(s) 116
PflMI CCANNNNNTGG 1 cut(s) 464
PkrI GCNGC 1 cut(s) 64
PleI GAGTC 1 cut(s) 432
PpsI GAGTC 1 cut(s) 432
Psp6I CCWGG 1 cut(s) 215
PspGI CCWGG 1 cut(s) 215
PspN4I GGNNCC 4 cut(s) 21, 150, 221, 381
PsuI RGATCY 1 cut(s) 19
RsaI GTAC 1 cut(s) 150
RsaNI GTAC 1 cut(s) 149
RseI CAYNNNNRTG 1 cut(s) 229
SaqAI TTAA 2 cut(s) 512, 518
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 2 cut(s) 19, 502
SchI GAGTC 1 cut(s) 433
ScrFI CCNGG 1 cut(s) 217
SduI GDGCHC 1 cut(s) 224
SetI ASST 7 cut(s) 125, 141, 205, 218, 406, 497, 518
SfaNI GCATC 1 cut(s) 51
SmiMI CAYNNNNRTG 1 cut(s) 229
SmlI CTYRAG 1 cut(s) 517
SmoI CTYRAG 1 cut(s) 517
Sse9I AATT 4 cut(s) 111, 153, 287, 474
SspMI CTAG 1 cut(s) 204
StyD4I CCNGG 1 cut(s) 215
StyI CCWWGG 1 cut(s) 276
TasI AATT 4 cut(s) 111, 153, 287, 474
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 2 cut(s) 512, 518
Tru9I TTAA 2 cut(s) 512, 518
TscAI CASTG 1 cut(s) 236
TseI GCWGC 1 cut(s) 62
TspDTI ATGAA 2 cut(s) 18, 241
TspRI CASTG 1 cut(s) 236
Van91I CCANNNNNTGG 1 cut(s) 464
Vha464I CTTAAG 1 cut(s) 517
XceI RCATGY 2 cut(s) 62, 162
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.