Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001603

Physical Location & Seq

Genomic Coordinates Reverse (-)

20228514 .. 20229743

Gene Structure 1230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g24880.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCAGCCGTTGATCTTCATCTTATGGCCTCTGTGTTTGGCATTCTGGGTACCATAGTCGCCTTCCTCGTCTACCTTGCCCCAATACCAACATTTTATAGGATTTTCAAGACAAAATCAACACAAGGGTTCCAATCTATACCCTATTCAGTGGCATTGTTTAGTGCCATGTTAACGCCCTACTATGGCTTCCTCAAGACAAATGCTCTGATTCTCATCGCGATCAATTCCATTGCAAAGCTATTTGTTCTGTTTAATGCCTTGGCTTTTGGTTCCATCTTAGTTGGTACAAGCCAAATCCCAAATGTTCTTCTGCGGTTGAAAGTTGTTGGGTGGATTAATGTAGTGTTCAATGTTTCTGTGTTTGCTGCTCCTCTTAGTAACATGGCACCAAACATCTTAGGGTTCGCCTTTGGGGTTGTGCAGATGATTATGTTCTTGGTCTACAAGAGCAACAAGAAAGCAGTCTTACCAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008643 GO:0009555 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0015144 GO:0016020 GO:0016021 GO:0022414 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

160

Amino Acids

17.35

Weight (kDa)

10.0

Isoelectric Point (pI)

25.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	12 - 90	3e-14	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001603)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24880 FvH4_2g24890 FvH4_2g24900 FvH4_2g24901
malus_domestica	MD11G1299200.v1.1
prunus_persica	Prupe.8G253500_v2.0.a1
pyrus_communis	pycom11g26290
rosa_chinensis	RchiOBHm_Chr6g0292721 RchiOBHm_Chr6g0292761 RchiOBHm_Chr6g0292771 RchiOBHm_Chr6g0292781 RchiOBHm_Chr6g0292811
rosa_laevigata	RLG00000011990 RLG00000011991 RLG00000011992 RLG00000011993 RLG00000011996
rosa_multiflora	Rmu_sc0006513.1_g000007 Rmu_sc0006513.1_g000008 Rmu_sc0007398.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174680 Rroxscaffold_7G00174690 Rroxscaffold_7G00174700 Rroxscaffold_7G00174740
rosa_rugosa	Rorug06G0229200 Rorug06G0229500 Rorug06G0229600 Rorug06G0229900
rosa_samantha	Rh6AG342600 Rh6AG342900 Rh6AG343000 Rh6AG343100 Rh6AG343200 Rh6BG349800 Rh6BG349900 Rh6BG350000 Rh6BG350100 Rh6BG350200 Rh6CG356700 Rh6CG357000 Rh6CG357100 Rh6CG357300 Rh6DG342700 Rh6DG342800 Rh6DG343200
rosa_wichuraiana	Rw6G029880 Rw6G029890 Rw6G029900 Rw6G029910 Rw6G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	50
AccB1I	GGYRCC	2 cut(s)	50, 388
AccI	GTMKAC	2 cut(s)	72, 444
AccII	CGCG	1 cut(s)	221
AciI	CCGC	1 cut(s)	316
AfaI	GTAC	2 cut(s)	52, 289
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	3 cut(s)	109, 322, 352
AluBI	AGCT	1 cut(s)	241
AluI	AGCT	1 cut(s)	241
AoxI	GGCC	1 cut(s)	27
ApeKI	GCWGC	2 cut(s)	5, 368
AseI	ATTAAT	1 cut(s)	339
Asp718I	GGTACC	1 cut(s)	50
BaeI	ACNNNNGTAYC	2 cut(s)	42, 75
BanI	GGYRCC	2 cut(s)	50, 388
BbvI	GCAGC	2 cut(s)	17, 355
BccI	CCATC	1 cut(s)	284
BisI	GCNGC	2 cut(s)	6, 369
BlsI	GCNGC	2 cut(s)	7, 370
BmiI	GGNNCC	4 cut(s)	52, 131, 274, 390
BpuEI	CTTGAG	1 cut(s)	179
BsaBI	GATNNNNATC	2 cut(s)	18, 215
BsaJI	CCNNGG	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse3DI	GCAATG	1 cut(s)	231
Bse8I	GATNNNNATC	2 cut(s)	18, 215
BseDI	CCNNGG	1 cut(s)	261
BseJI	GATNNNNATC	2 cut(s)	18, 215
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMI	GCAATG	1 cut(s)	231
BseRI	GAGGAG	1 cut(s)	363
BseXI	GCAGC	2 cut(s)	17, 355
BsgI	GTGCAG	1 cut(s)	443
Bsh1236I	CGCG	1 cut(s)	221
BshFI	GGCC	1 cut(s)	29
BshNI	GGYRCC	2 cut(s)	50, 388
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmI	GAATGC	1 cut(s)	42
BsnI	GGCC	1 cut(s)	29
Bsp143I	GATC	2 cut(s)	13, 222
Bsp68I	TCGCGA	1 cut(s)	221
BspACI	CCGC	1 cut(s)	316
BspANI	GGCC	1 cut(s)	29
BspFNI	CGCG	1 cut(s)	221
BspLI	GGNNCC	4 cut(s)	52, 131, 274, 390
BspT107I	GGYRCC	2 cut(s)	50, 388
BsrDI	GCAATG	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	2 cut(s)	13, 222
BssT1I	CCWWGG	1 cut(s)	261
BstDEI	CTNAG	3 cut(s)	280, 377, 400
BstFNI	CGCG	1 cut(s)	221
BstKTI	GATC	2 cut(s)	16, 225
BstMBI	GATC	2 cut(s)	13, 222
BstUI	CGCG	1 cut(s)	221
BstV1I	GCAGC	2 cut(s)	17, 355
BsuRI	GGCC	1 cut(s)	29
BtgZI	GCGATG	1 cut(s)	202
BtsIMutI	CAGTG	1 cut(s)	156
BtuMI	TCGCGA	1 cut(s)	221
Csp6I	GTAC	2 cut(s)	51, 288
CviAII	CATG	2 cut(s)	169, 385
CviJI	RGCY	6 cut(s)	8, 29, 189, 241, 266, 294
CviKI_1	RGCY	6 cut(s)	8, 29, 189, 241, 266, 294
CviQI	GTAC	2 cut(s)	51, 288
DdeI	CTNAG	3 cut(s)	280, 377, 400
DpnI	GATC	2 cut(s)	15, 224
DpnII	GATC	2 cut(s)	13, 222
Eco130I	CCWWGG	1 cut(s)	261
EcoT14I	CCWWGG	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	2 cut(s)	172, 388
FaiI	YATR	8 cut(s)	26, 56, 99, 140, 170, 186, 386, 434
FatI	CATG	2 cut(s)	168, 384
FblI	GTMKAC	2 cut(s)	72, 444
Fnu4HI	GCNGC	2 cut(s)	6, 369
Fsp4HI	GCNGC	2 cut(s)	6, 369
GluI	GCNGC	2 cut(s)	6, 369
HaeIII	GGCC	1 cut(s)	29
Hin1II	CATG	2 cut(s)	172, 388
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HinfI	GANTC	1 cut(s)	211
HpaI	GTTAAC	1 cut(s)	174
Hpy166II	GTNNAC	3 cut(s)	73, 174, 445
Hpy188I	TCNGA	1 cut(s)	210
Hpy188III	TCNNGA	3 cut(s)	109, 196, 220
Hpy8I	GTNNAC	3 cut(s)	73, 174, 445
HpyAV	CCTTC	1 cut(s)	73
HpyCH4V	TGCA	2 cut(s)	236, 424
HpyF3I	CTNAG	3 cut(s)	280, 377, 400
Hsp92II	CATG	2 cut(s)	172, 388
KpnI	GGTACC	1 cut(s)	54
KspAI	GTTAAC	1 cut(s)	174
Kzo9I	GATC	2 cut(s)	13, 222
LmnI	GCTCC	1 cut(s)	376
LpnPI	CCDG	1 cut(s)	32
Lsp1109I	GCAGC	2 cut(s)	17, 355
MaeIII	GTNAC	1 cut(s)	380
MalI	GATC	2 cut(s)	15, 224
MboI	GATC	2 cut(s)	13, 222
MboII	GAAGA	2 cut(s)	8, 302
MluCI	AATT	1 cut(s)	226
MnlI	CCTC	4 cut(s)	40, 77, 203, 384
MseI	TTAA	3 cut(s)	173, 255, 339
Mva1269I	GAATGC	1 cut(s)	42
MvnI	CGCG	1 cut(s)	221
NdeII	GATC	2 cut(s)	13, 222
NlaIII	CATG	2 cut(s)	172, 388
NlaIV	GGNNCC	4 cut(s)	52, 131, 274, 390
NruI	TCGCGA	1 cut(s)	221
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PctI	GAATGC	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	211
PkrI	GCNGC	2 cut(s)	7, 370
PshBI	ATTAAT	1 cut(s)	339
PspN4I	GGNNCC	4 cut(s)	52, 131, 274, 390
RruI	TCGCGA	1 cut(s)	221
RsaI	GTAC	2 cut(s)	52, 289
RsaNI	GTAC	2 cut(s)	51, 288
SaqAI	TTAA	3 cut(s)	173, 255, 339
SatI	GCNGC	2 cut(s)	6, 369
Sau3AI	GATC	2 cut(s)	13, 222
SetI	ASST	2 cut(s)	78, 243
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	1 cut(s)	226
SsiI	CCGC	1 cut(s)	316
StyI	CCWWGG	1 cut(s)	261
TasI	AATT	1 cut(s)	226
TfiI	GAWTC	1 cut(s)	211
Tru1I	TTAA	3 cut(s)	173, 255, 339
Tru9I	TTAA	3 cut(s)	173, 255, 339
TscAI	CASTG	1 cut(s)	156
TseI	GCWGC	2 cut(s)	5, 368
TspDTI	ATGAA	1 cut(s)	8
TspRI	CASTG	1 cut(s)	156
VspI	ATTAAT	1 cut(s)	339
XmiI	GTMKAC	2 cut(s)	72, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.