Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001603

Physical Location & Seq

Genomic Coordinates Forward (+)

58062356 .. 58063851

Gene Structure 1496 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG350000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCACCCCTTAATCTTCATCTTATGGCCTCTATATTTGGAATTATGGGTACCGTCGGCTCGTTCCTCGTTTACCTAGCTCCAATACCAACATTTTATTGGATTTACAAGAAAAAATCAACATATGGATTCCCATCTCTACCCTACTCAGTGGCATTGTTTAGCGCCATGTTGACGCTCTACTATGCCTTCCTCAAGACACATTCTATGATTATCATCGCGATCAATTCTCTTGGCATCTTAATTGAAACCGGGTACCTTTTATTGTTCATGATTTATGCACCACCAAAATCCAGGATCTTCACAGCAAAGTTTCTTGGCCTCTTTAATGTTTTGGGTTTTGGTTTGATCGTATTATGTACATGCCTAATCCCAAATGATTTTCTGCGGTTGAAAATTGTTGGGTGGGTTACTATCGTGTTTAATGTTGGTGTATTTGCTGCTCCTCTTACTATTCTGGCACCAAACGTGTTAGGGTTTATATTCGGGATTGTGCAGATGATGATGTTCTACATCTACCGGAAGAGCACAAGGAAAGCTGGTTTACCGTTAGATAGTCTAAATGATCAGACACTAAGCACAAACAGGCGGGTTGCTGTTCCGGAAAATGCTGACATGAGAGTAGCAATGACAATAATTGACATTGGTACTCAGATTCAGTTGAAAGCAGGGGACGCAAAGAAGAGTTCTGAAACTGATGATCATGAGAATCAACTACCAAAGCAGGGGCGGCCGGAAGACAAGGGGTCGCCCACCACCGCCTTGGGACTCACACTCAGAAGGGCCTCAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008643 GO:0009555 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0015144 GO:0016020 GO:0016021 GO:0022414 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

264

Amino Acids

29.25

Weight (kDa)

9.62

Isoelectric Point (pI)

33.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	12 - 97	7.2e-19	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001603)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24880 FvH4_2g24890 FvH4_2g24900 FvH4_2g24901
malus_domestica	MD11G1299200.v1.1
prunus_persica	Prupe.8G253500_v2.0.a1
pyrus_communis	pycom11g26290
rosa_chinensis	RchiOBHm_Chr6g0292721 RchiOBHm_Chr6g0292761 RchiOBHm_Chr6g0292771 RchiOBHm_Chr6g0292781 RchiOBHm_Chr6g0292811
rosa_laevigata	RLG00000011990 RLG00000011991 RLG00000011992 RLG00000011993 RLG00000011996
rosa_multiflora	Rmu_sc0006513.1_g000007 Rmu_sc0006513.1_g000008 Rmu_sc0007398.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174680 Rroxscaffold_7G00174690 Rroxscaffold_7G00174700 Rroxscaffold_7G00174740
rosa_rugosa	Rorug06G0229200 Rorug06G0229500 Rorug06G0229600 Rorug06G0229900
rosa_samantha	Rh6AG342600 Rh6AG342900 Rh6AG343000 Rh6AG343100 Rh6AG343200 Rh6BG349800 Rh6BG349900 Rh6BG350000 Rh6BG350100 Rh6BG350200 Rh6CG356700 Rh6CG357000 Rh6CG357100 Rh6CG357300 Rh6DG342700 Rh6DG342800 Rh6DG343200
rosa_wichuraiana	Rw6G029880 Rw6G029890 Rw6G029900 Rw6G029910 Rw6G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	50, 255
AccB1I	GGYRCC	4 cut(s)	4, 50, 255, 460
AccII	CGCG	1 cut(s)	221
AccIII	TCCGGA	1 cut(s)	601
AciI	CCGC	4 cut(s)	388, 589, 730, 759
AclWI	GGATC	1 cut(s)	305
AcoI	YGGCCR	1 cut(s)	731
AfaI	GTAC	4 cut(s)	52, 257, 361, 649
AfiI	CCNNNNNNNGG	1 cut(s)	725
AflIII	ACRYGT	1 cut(s)	468
AgsI	TTSAA	3 cut(s)	248, 394, 664
AhdI	GACNNNNNGTC	1 cut(s)	745
AjnI	CCWGG	1 cut(s)	293
AluBI	AGCT	2 cut(s)	80, 539
AluI	AGCT	2 cut(s)	80, 539
Alw21I	GWGCWC	1 cut(s)	530
AlwI	GGATC	1 cut(s)	305
Aor13HI	TCCGGA	1 cut(s)	601
AoxI	GGCC	4 cut(s)	27, 319, 731, 783
ApeKI	GCWGC	1 cut(s)	440
Asp718I	GGTACC	2 cut(s)	50, 255
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	783
AsuC2I	CCSGG	1 cut(s)	253
BanI	GGYRCC	4 cut(s)	4, 50, 255, 460
BbsI	GAAGAC	1 cut(s)	744
Bbv12I	GWGCWC	1 cut(s)	530
BbvI	GCAGC	1 cut(s)	427
BccI	CCATC	1 cut(s)	142
BciT130I	CCWGG	1 cut(s)	295
BclI	TGATCA	2 cut(s)	565, 700
BcnI	CCSGG	1 cut(s)	253
BfaI	CTAG	1 cut(s)	77
BfoI	RGCGCY	1 cut(s)	168
BisI	GCNGC	2 cut(s)	441, 731
BlsI	GCNGC	2 cut(s)	442, 732
Bme1390I	CCNGG	2 cut(s)	253, 295
BmeRI	GACNNNNNGTC	1 cut(s)	745
BmgT120I	GGNCC	1 cut(s)	783
BmiI	GGNNCC	4 cut(s)	6, 52, 257, 462
BmrFI	CCNGG	2 cut(s)	253, 295
BmsI	GCATC	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	744
BpuEI	CTTGAG	1 cut(s)	179
BpuMI	CCSGG	1 cut(s)	253
BsaBI	GATNNNNATC	2 cut(s)	133, 215
BsaJI	CCNNGG	1 cut(s)	762
BsaWI	WCCGGW	2 cut(s)	519, 601
Bsc4I	CCNNNNNNNGG	1 cut(s)	725
Bse3DI	GCAATG	1 cut(s)	633
Bse8I	GATNNNNATC	2 cut(s)	133, 215
BseAI	TCCGGA	1 cut(s)	601
BseBI	CCWGG	1 cut(s)	295
BseDI	CCNNGG	1 cut(s)	762
BseJI	GATNNNNATC	2 cut(s)	133, 215
BseLI	CCNNNNNNNGG	1 cut(s)	725
BseMI	GCAATG	1 cut(s)	633
BseMII	CTCAG	3 cut(s)	162, 665, 790
BseRI	GAGGAG	1 cut(s)	435
BseX3I	CGGCCG	1 cut(s)	731
BseXI	GCAGC	1 cut(s)	427
BsgI	GTGCAG	1 cut(s)	515
Bsh1236I	CGCG	1 cut(s)	221
Bsh1285I	CGRYCG	1 cut(s)	734
BshFI	GGCC	4 cut(s)	29, 321, 733, 785
BshNI	GGYRCC	4 cut(s)	4, 50, 255, 460
BsiEI	CGRYCG	1 cut(s)	734
BsiHKAI	GWGCWC	1 cut(s)	530
BsiSI	CCGG	4 cut(s)	252, 520, 602, 734
BslFI	GGGAC	2 cut(s)	686, 780
BslI	CCNNNNNNNGG	1 cut(s)	725
BsmFI	GGGAC	2 cut(s)	686, 780
BsnI	GGCC	4 cut(s)	29, 321, 733, 785
Bsp1286I	GDGCHC	1 cut(s)	530
Bsp13I	TCCGGA	1 cut(s)	601
Bsp1407I	TGTACA	1 cut(s)	359
Bsp143I	GATC	5 cut(s)	222, 297, 348, 565, 700
Bsp68I	TCGCGA	1 cut(s)	221
BspACI	CCGC	4 cut(s)	388, 589, 730, 759
BspANI	GGCC	4 cut(s)	29, 321, 733, 785
BspCNI	CTCAG	3 cut(s)	161, 664, 789
BspEI	TCCGGA	1 cut(s)	601
BspFNI	CGCG	1 cut(s)	221
BspHI	TCATGA	2 cut(s)	270, 703
BspLI	GGNNCC	4 cut(s)	6, 52, 257, 462
BspPI	GGATC	1 cut(s)	305
BspQI	GCTCTTC	1 cut(s)	518
BspT107I	GGYRCC	4 cut(s)	4, 50, 255, 460
BsrDI	GCAATG	1 cut(s)	633
BsrGI	TGTACA	1 cut(s)	359
BssECI	CCNNGG	1 cut(s)	762
BssMI	GATC	5 cut(s)	222, 297, 348, 565, 700
BssT1I	CCWWGG	1 cut(s)	762
Bst2UI	CCWGG	1 cut(s)	295
Bst4CI	ACNGT	2 cut(s)	55, 549
Bst6I	CTCTTC	2 cut(s)	518, 677
BstAUI	TGTACA	1 cut(s)	359
BstDEI	CTNAG	4 cut(s)	148, 575, 651, 776
BstFNI	CGCG	1 cut(s)	221
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	5 cut(s)	225, 300, 351, 568, 703
BstMBI	GATC	5 cut(s)	222, 297, 348, 565, 700
BstMCI	CGRYCG	1 cut(s)	734
BstMWI	GCNNNNNNNGC	2 cut(s)	674, 730
BstNI	CCWGG	1 cut(s)	295
BstNSI	RCATGY	1 cut(s)	366
BstSCI	CCNGG	2 cut(s)	251, 293
BstUI	CGCG	1 cut(s)	221
BstV1I	GCAGC	1 cut(s)	427
BstV2I	GAAGAC	1 cut(s)	744
BstX2I	RGATCY	1 cut(s)	297
BstXI	CCANNNNNNTGG	1 cut(s)	763
BstYI	RGATCY	1 cut(s)	297
BstZI	CGGCCG	1 cut(s)	731
BsuRI	GGCC	4 cut(s)	29, 321, 733, 785
BtgZI	GCGATG	1 cut(s)	202
BtsIMutI	CAGTG	1 cut(s)	156
BtuMI	TCGCGA	1 cut(s)	221
CciI	TCATGA	2 cut(s)	270, 703
CfoI	GCGC	1 cut(s)	167
Cfr13I	GGNCC	1 cut(s)	783
CseI	GACGC	2 cut(s)	184, 683
Csp6I	GTAC	4 cut(s)	51, 256, 360, 648
CviAII	CATG	5 cut(s)	169, 271, 363, 616, 704
CviJI	RGCY	7 cut(s)	29, 60, 80, 321, 539, 733, 785
CviKI_1	RGCY	7 cut(s)	29, 60, 80, 321, 539, 733, 785
CviQI	GTAC	4 cut(s)	51, 256, 360, 648
DdeI	CTNAG	4 cut(s)	148, 575, 651, 776
DpnI	GATC	5 cut(s)	224, 299, 350, 567, 702
DpnII	GATC	5 cut(s)	222, 297, 348, 565, 700
DriI	GACNNNNNGTC	1 cut(s)	745
EaeI	YGGCCR	1 cut(s)	731
EagI	CGGCCG	1 cut(s)	731
Eam1104I	CTCTTC	2 cut(s)	518, 677
Eam1105I	GACNNNNNGTC	1 cut(s)	745
EarI	CTCTTC	2 cut(s)	518, 677
EclXI	CGGCCG	1 cut(s)	731
Eco130I	CCWWGG	1 cut(s)	762
Eco52I	CGGCCG	1 cut(s)	731
EcoO109I	RGGNCCY	1 cut(s)	783
EcoRII	CCWGG	1 cut(s)	293
EcoT14I	CCWWGG	1 cut(s)	762
ErhI	CCWWGG	1 cut(s)	762
FaeI	CATG	5 cut(s)	172, 274, 366, 619, 707
FaqI	GGGAC	2 cut(s)	686, 780
FatI	CATG	5 cut(s)	168, 270, 362, 615, 703
FauI	CCCGC	1 cut(s)	582
FauNDI	CATATG	1 cut(s)	124
FbaI	TGATCA	2 cut(s)	565, 700
Fnu4HI	GCNGC	2 cut(s)	441, 731
Fsp4HI	GCNGC	2 cut(s)	441, 731
FspBI	CTAG	1 cut(s)	77
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	2 cut(s)	441, 731
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	4 cut(s)	29, 321, 733, 785
HapII	CCGG	4 cut(s)	252, 520, 602, 734
HgaI	GACGC	2 cut(s)	184, 683
HhaI	GCGC	1 cut(s)	167
Hin1II	CATG	5 cut(s)	172, 274, 366, 619, 707
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HinfI	GANTC	4 cut(s)	129, 655, 709, 768
HpaII	CCGG	4 cut(s)	252, 520, 602, 734
Hpy166II	GTNNAC	3 cut(s)	73, 174, 545
Hpy188I	TCNGA	4 cut(s)	570, 654, 691, 779
Hpy188III	TCNNGA	6 cut(s)	196, 220, 271, 487, 602, 704
Hpy8I	GTNNAC	3 cut(s)	73, 174, 545
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	2 cut(s)	199, 774
HpyCH4III	ACNGT	2 cut(s)	55, 549
HpyCH4IV	ACGT	1 cut(s)	468
HpyCH4V	TGCA	2 cut(s)	281, 496
HpyF10VI	GCNNNNNNNGC	2 cut(s)	674, 730
HpyF3I	CTNAG	4 cut(s)	148, 575, 651, 776
HpySE526I	ACGT	1 cut(s)	468
Hsp92II	CATG	5 cut(s)	172, 274, 366, 619, 707
HspAI	GCGC	1 cut(s)	165
Kpn2I	TCCGGA	1 cut(s)	601
KpnI	GGTACC	2 cut(s)	54, 259
Ksp22I	TGATCA	2 cut(s)	565, 700
Kzo9I	GATC	5 cut(s)	222, 297, 348, 565, 700
LguI	GCTCTTC	1 cut(s)	518
LmnI	GCTCC	2 cut(s)	85, 448
Lsp1109I	GCAGC	1 cut(s)	427
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	1 cut(s)	77
MaeII	ACGT	1 cut(s)	468
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	5 cut(s)	224, 299, 350, 567, 702
MboI	GATC	5 cut(s)	222, 297, 348, 565, 700
MboII	GAAGA	5 cut(s)	8, 292, 535, 694, 749
MflI	RGATCY	1 cut(s)	297
MhlI	GDGCHC	1 cut(s)	530
MluCI	AATT	5 cut(s)	42, 226, 243, 396, 636
MlyI	GAGTC	1 cut(s)	762
MnlI	CCTC	5 cut(s)	40, 77, 203, 332, 456
MroI	TCCGGA	1 cut(s)	601
MseI	TTAA	4 cut(s)	12, 242, 327, 423
MspI	CCGG	4 cut(s)	252, 520, 602, 734
MspR9I	CCNGG	2 cut(s)	253, 295
MvaI	CCWGG	1 cut(s)	295
MvnI	CGCG	1 cut(s)	221
MwoI	GCNNNNNNNGC	2 cut(s)	674, 730
NciI	CCSGG	1 cut(s)	253
NdeI	CATATG	1 cut(s)	124
NdeII	GATC	5 cut(s)	222, 297, 348, 565, 700
NlaIII	CATG	5 cut(s)	172, 274, 366, 619, 707
NlaIV	GGNNCC	4 cut(s)	6, 52, 257, 462
NruI	TCGCGA	1 cut(s)	221
NspI	RCATGY	1 cut(s)	366
PagI	TCATGA	2 cut(s)	270, 703
PciSI	GCTCTTC	1 cut(s)	518
PfeI	GAWTC	3 cut(s)	129, 655, 709
PfoI	TCCNGGA	1 cut(s)	293
PkrI	GCNGC	2 cut(s)	442, 732
PleI	GAGTC	1 cut(s)	762
PpsI	GAGTC	1 cut(s)	762
Psp6I	CCWGG	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	293
PspN4I	GGNNCC	4 cut(s)	6, 52, 257, 462
PspPI	GGNCC	1 cut(s)	783
PsuI	RGATCY	1 cut(s)	297
RruI	TCGCGA	1 cut(s)	221
RsaI	GTAC	4 cut(s)	52, 257, 361, 649
RsaNI	GTAC	4 cut(s)	51, 256, 360, 648
SapI	GCTCTTC	1 cut(s)	518
SaqAI	TTAA	4 cut(s)	12, 242, 327, 423
SatI	GCNGC	2 cut(s)	441, 731
Sau3AI	GATC	5 cut(s)	222, 297, 348, 565, 700
Sau96I	GGNCC	1 cut(s)	783
SchI	GAGTC	1 cut(s)	762
ScrFI	CCNGG	2 cut(s)	253, 295
SduI	GDGCHC	1 cut(s)	530
SetI	ASST	5 cut(s)	78, 82, 261, 471, 541
SfaNI	GCATC	1 cut(s)	246
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	5 cut(s)	42, 226, 243, 396, 636
SsiI	CCGC	4 cut(s)	388, 589, 730, 759
SspMI	CTAG	1 cut(s)	77
StyD4I	CCNGG	2 cut(s)	251, 293
StyI	CCWWGG	1 cut(s)	762
TaaI	ACNGT	2 cut(s)	55, 549
TaiI	ACGT	1 cut(s)	471
TasI	AATT	5 cut(s)	42, 226, 243, 396, 636
TatI	WGTACW	1 cut(s)	359
TauI	GCSGC	1 cut(s)	733
TfiI	GAWTC	3 cut(s)	129, 655, 709
Tru1I	TTAA	4 cut(s)	12, 242, 327, 423
Tru9I	TTAA	4 cut(s)	12, 242, 327, 423
TscAI	CASTG	1 cut(s)	156
TseI	GCWGC	1 cut(s)	440
TspDTI	ATGAA	2 cut(s)	8, 259
TspRI	CASTG	1 cut(s)	156
XceI	RCATGY	1 cut(s)	366
XcmI	CCANNNNNNNNNTGG	2 cut(s)	96, 760
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.