Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001603

Physical Location & Seq

Genomic Coordinates Reverse (-)

41575287 .. 41576791

Gene Structure 1505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1299200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGCAGCCCCTGATGCTCCTCTCTTGGCCTCAGTTTTTGGCATTCTAGGTAACATTGTGTCCTTCATGGTGTTACTAGCTCCACTGCCAACATTTTATAGGATTTTCAAGAAAAAATCAACAGAGGGATTCCAATCTATACCTTATGCAGTGGCACTGTTTAGCGCCATGTTGATGCTCTACTATGCCTTCCTCAAGGGACATGCTTTCATGCTCATCACCATCAATTCCATCGCCTGCGTCATCGAAACAAGTTATCTTGTAATCTACATGATTTATGCACCAGCAAAAATCAGGGTACATAATTATAATACGCTCTATCTTGTAGGGTTAGGTGCGATCCGATTTGGCGTACCTATAAAACATTTCACGTTCAGCTTTTATTTACTCGCATACAATTTTGTTCTGGTTTTGCAGATTTATACGGCTAAGCTACTTACCCTTTTCAATGTGGGGGCTTATGGTGTGATCTTATTTGCTACTTCCTTAATCACAGATCCTTATCTGAGGATTAAAATAGTTGGGTGGACTAACGTTGTGTTTTCTGTATGTGTATTTGCTGCTCCTCTTAGTATAATGAGGCTAGTTATTAAAACAAGGAGTGTGGAATACATGTCCTTCCCTTTGTCGTTCTGCTTAACTCTATGCGCTGTGATGTGGTTCTTCTATGGCCTTCTACTAAGAGATTTATTCGTAGCGGCACCAAACATCCTAGGGTTCGGGTTCGGGATTGCGCAGATGATCATGTACCTAGTGTTCAAGAAATCAAAGAAAGCCGTCTTACCCCAATATATTCTCAAAGAGATACCAAATGAAAATGGGGTTGCAGAAAATGACAATCAGTTGAAAGAAGAAGACACAAATGACAGCAAGGTTGAAGATGTTTGCTCGGAGAGCATGACAAGCAAGGTTGAAGATGCTCGGTCGGAAAGCATGACAAGCAAGGTCGAAGATGCTCGGTTGGAGAGCATGACAAGCAAGTCTGAAGATGCAACTACAGAACAAAATGAATCAGTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008643 GO:0009555 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0015144 GO:0016020 GO:0016021 GO:0022414 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

341

Amino Acids

38.12

Weight (kDa)

7.56

Isoelectric Point (pI)

40.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	12 - 97	2e-21	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	173 - 258	2.4e-26	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001603)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24880 FvH4_2g24890 FvH4_2g24900 FvH4_2g24901
malus_domestica	MD11G1299200.v1.1
prunus_persica	Prupe.8G253500_v2.0.a1
pyrus_communis	pycom11g26290
rosa_chinensis	RchiOBHm_Chr6g0292721 RchiOBHm_Chr6g0292761 RchiOBHm_Chr6g0292771 RchiOBHm_Chr6g0292781 RchiOBHm_Chr6g0292811
rosa_laevigata	RLG00000011990 RLG00000011991 RLG00000011992 RLG00000011993 RLG00000011996
rosa_multiflora	Rmu_sc0006513.1_g000007 Rmu_sc0006513.1_g000008 Rmu_sc0007398.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174680 Rroxscaffold_7G00174690 Rroxscaffold_7G00174700 Rroxscaffold_7G00174740
rosa_rugosa	Rorug06G0229200 Rorug06G0229500 Rorug06G0229600 Rorug06G0229900
rosa_samantha	Rh6AG342600 Rh6AG342900 Rh6AG343000 Rh6AG343100 Rh6AG343200 Rh6BG349800 Rh6BG349900 Rh6BG350000 Rh6BG350100 Rh6BG350200 Rh6CG356700 Rh6CG357000 Rh6CG357100 Rh6CG357300 Rh6DG342700 Rh6DG342800 Rh6DG343200
rosa_wichuraiana	Rw6G029880 Rw6G029890 Rw6G029900 Rw6G029910 Rw6G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	309
AasI	GACNNNNNNGTC	1 cut(s)	979
Acc16I	TGCGCA	1 cut(s)	735
AccB1I	GGYRCC	1 cut(s)	700
AciI	CCGC	1 cut(s)	698
AclI	AACGTT	1 cut(s)	534
AclWI	GGATC	2 cut(s)	334, 491
AcuI	CTGAAG	1 cut(s)	1005
AfaI	GTAC	3 cut(s)	300, 354, 749
AflIII	ACRYGT	1 cut(s)	612
AgsI	TTSAA	6 cut(s)	109, 448, 760, 847, 878, 914
AluBI	AGCT	3 cut(s)	80, 378, 433
AluI	AGCT	3 cut(s)	80, 378, 433
AlwI	GGATC	2 cut(s)	334, 491
AlwNI	CAGNNNCTG	1 cut(s)	11
AoxI	GGCC	2 cut(s)	27, 670
ApeKI	GCWGC	2 cut(s)	5, 560
AspA2I	CCTAGG	1 cut(s)	712
AspLEI	GCGC	3 cut(s)	167, 650, 736
AsuHPI	GGTGA	1 cut(s)	211
AvrII	CCTAGG	1 cut(s)	712
BanI	GGYRCC	1 cut(s)	700
BbsI	GAAGAC	1 cut(s)	861
BbvI	GCAGC	2 cut(s)	17, 547
BccI	CCATC	2 cut(s)	230, 239
BceAI	ACGGC	2 cut(s)	441, 761
BclI	TGATCA	1 cut(s)	741
BfaI	CTAG	5 cut(s)	47, 77, 584, 713, 752
BfmI	CTRYAG	1 cut(s)	996
BfoI	RGCGCY	1 cut(s)	168
BisI	GCNGC	3 cut(s)	6, 561, 699
BlnI	CCTAGG	1 cut(s)	712
BlpI	GCTNAGC	1 cut(s)	429
BlsI	GCNGC	3 cut(s)	7, 562, 700
BmiI	GGNNCC	1 cut(s)	702
BmsI	GCATC	5 cut(s)	4, 165, 907, 943, 979
BpiI	GAAGAC	1 cut(s)	861
Bpu1102I	GCTNAGC	1 cut(s)	429
BpuEI	CTTGAG	1 cut(s)	179
BsaBI	GATNNNNATC	2 cut(s)	133, 501
BsaJI	CCNNGG	1 cut(s)	712
Bse8I	GATNNNNATC	2 cut(s)	133, 501
BseDI	CCNNGG	1 cut(s)	712
BseGI	GGATG	1 cut(s)	708
BseJI	GATNNNNATC	2 cut(s)	133, 501
BseMII	CTCAG	2 cut(s)	45, 497
BseRI	GAGGAG	2 cut(s)	9, 555
BseXI	GCAGC	2 cut(s)	17, 547
Bsh1285I	CGRYCG	1 cut(s)	926
BshFI	GGCC	2 cut(s)	29, 672
BshNI	GGYRCC	1 cut(s)	700
BsiEI	CGRYCG	1 cut(s)	926
BslFI	GGGAC	1 cut(s)	213
BsmFI	GGGAC	1 cut(s)	213
BsmI	GAATGC	1 cut(s)	42
BsnI	GGCC	2 cut(s)	29, 672
Bsp143I	GATC	4 cut(s)	339, 468, 496, 741
Bsp1720I	GCTNAGC	1 cut(s)	429
BspACI	CCGC	1 cut(s)	698
BspANI	GGCC	2 cut(s)	29, 672
BspCNI	CTCAG	2 cut(s)	44, 498
BspLI	GGNNCC	1 cut(s)	702
BspPI	GGATC	2 cut(s)	334, 491
BspT107I	GGYRCC	1 cut(s)	700
BssECI	CCNNGG	1 cut(s)	712
BssMI	GATC	4 cut(s)	339, 468, 496, 741
BssT1I	CCWWGG	1 cut(s)	712
Bst4CI	ACNGT	1 cut(s)	159
BstC8I	GCNNGC	1 cut(s)	238
BstDEI	CTNAG	5 cut(s)	31, 429, 506, 569, 680
BstF5I	GGATG	1 cut(s)	708
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	3 cut(s)	167, 650, 736
BstKTI	GATC	4 cut(s)	342, 471, 499, 744
BstMBI	GATC	4 cut(s)	339, 468, 496, 741
BstMCI	CGRYCG	1 cut(s)	926
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 894, 903, 939, 975
BstNSI	RCATGY	2 cut(s)	206, 616
BstSFI	CTRYAG	1 cut(s)	996
BstV1I	GCAGC	2 cut(s)	17, 547
BstV2I	GAAGAC	1 cut(s)	861
BstX2I	RGATCY	1 cut(s)	496
BstYI	RGATCY	1 cut(s)	496
BsuRI	GGCC	2 cut(s)	29, 672
BtgZI	GCGATG	1 cut(s)	217
BtsCI	GGATG	1 cut(s)	708
BtsI	GCAGTG	2 cut(s)	83, 156
BtsIMutI	CAGTG	3 cut(s)	83, 155, 156
Cac8I	GCNNGC	1 cut(s)	238
CaiI	CAGNNNCTG	1 cut(s)	11
CfoI	GCGC	3 cut(s)	167, 650, 736
CseI	GACGC	1 cut(s)	229
Csp6I	GTAC	3 cut(s)	299, 353, 748
CspCI	CAANNNNNGTGG	2 cut(s)	585, 620
CviQI	GTAC	3 cut(s)	299, 353, 748
DdeI	CTNAG	5 cut(s)	31, 429, 506, 569, 680
DpnI	GATC	4 cut(s)	341, 470, 498, 743
DpnII	GATC	4 cut(s)	339, 468, 496, 741
DrdI	GACNNNNNNGTC	1 cut(s)	979
DseDI	GACNNNNNNGTC	1 cut(s)	979
Eco130I	CCWWGG	1 cut(s)	712
Eco57I	CTGAAG	1 cut(s)	1005
EcoT14I	CCWWGG	1 cut(s)	712
ErhI	CCWWGG	1 cut(s)	712
FaqI	GGGAC	1 cut(s)	213
FbaI	TGATCA	1 cut(s)	741
Fnu4HI	GCNGC	3 cut(s)	6, 561, 699
FokI	GGATG	1 cut(s)	695
Fsp4HI	GCNGC	3 cut(s)	6, 561, 699
FspBI	CTAG	5 cut(s)	47, 77, 584, 713, 752
FspI	TGCGCA	1 cut(s)	735
GlaI	GCGC	3 cut(s)	166, 649, 735
GluI	GCNGC	3 cut(s)	6, 561, 699
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	2 cut(s)	29, 672
HgaI	GACGC	1 cut(s)	229
HhaI	GCGC	3 cut(s)	167, 650, 736
Hin6I	GCGC	3 cut(s)	165, 648, 734
HinP1I	GCGC	3 cut(s)	165, 648, 734
HinfI	GANTC	2 cut(s)	129, 1010
HphI	GGTGA	1 cut(s)	211
Hpy166II	GTNNAC	1 cut(s)	528
Hpy188I	TCNGA	5 cut(s)	344, 507, 892, 928, 985
Hpy188III	TCNNGA	3 cut(s)	109, 727, 760
Hpy8I	GTNNAC	1 cut(s)	528
HpyAV	CCTTC	4 cut(s)	73, 199, 628, 683
HpyCH4III	ACNGT	1 cut(s)	159
HpyCH4IV	ACGT	2 cut(s)	371, 534
HpyCH4V	TGCA	5 cut(s)	149, 281, 415, 827, 992
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 894, 903, 939, 975
HpyF3I	CTNAG	5 cut(s)	31, 429, 506, 569, 680
HpySE526I	ACGT	2 cut(s)	371, 534
HspAI	GCGC	3 cut(s)	165, 648, 734
Ksp22I	TGATCA	1 cut(s)	741
Kzo9I	GATC	4 cut(s)	339, 468, 496, 741
LmnI	GCTCC	3 cut(s)	22, 85, 568
LpnPI	CCDG	5 cut(s)	24, 250, 280, 297, 392
Lsp1109I	GCAGC	2 cut(s)	17, 547
LweI	GCATC	5 cut(s)	4, 165, 907, 943, 979
MaeI	CTAG	5 cut(s)	47, 77, 584, 713, 752
MaeII	ACGT	2 cut(s)	371, 534
MaeIII	GTNAC	2 cut(s)	50, 72
MalI	GATC	4 cut(s)	341, 470, 498, 743
MboI	GATC	4 cut(s)	339, 468, 496, 741
MboII	GAAGA	7 cut(s)	655, 863, 866, 890, 926, 962, 998
MflI	RGATCY	1 cut(s)	496
MluCI	AATT	3 cut(s)	226, 304, 397
MmeI	TCCRAC	2 cut(s)	906, 942
MnlI	CCTC	7 cut(s)	30, 40, 118, 203, 501, 573, 576
MseI	TTAA	4 cut(s)	488, 513, 591, 638
MslI	CAYNNNNRTG	1 cut(s)	173
Mva1269I	GAATGC	1 cut(s)	42
MwoI	GCNNNNNNNGC	5 cut(s)	14, 894, 903, 939, 975
NdeII	GATC	4 cut(s)	339, 468, 496, 741
NlaIV	GGNNCC	1 cut(s)	702
NsbI	TGCGCA	1 cut(s)	735
NspI	RCATGY	2 cut(s)	206, 616
PciI	ACATGT	1 cut(s)	612
PctI	GAATGC	1 cut(s)	42
PfeI	GAWTC	2 cut(s)	129, 1010
PkrI	GCNGC	3 cut(s)	7, 562, 700
PscI	ACATGT	1 cut(s)	612
PsiI	TTATAA	1 cut(s)	309
Psp1406I	AACGTT	1 cut(s)	534
PspN4I	GGNNCC	1 cut(s)	702
PsrI	GAACNNNNNNTAC	2 cut(s)	740, 772
PstNI	CAGNNNCTG	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	496
RsaI	GTAC	3 cut(s)	300, 354, 749
RsaNI	GTAC	3 cut(s)	299, 353, 748
RseI	CAYNNNNRTG	1 cut(s)	173
SaqAI	TTAA	4 cut(s)	488, 513, 591, 638
SatI	GCNGC	3 cut(s)	6, 561, 699
Sau3AI	GATC	4 cut(s)	339, 468, 496, 741
SfaNI	GCATC	5 cut(s)	4, 165, 907, 943, 979
SfcI	CTRYAG	1 cut(s)	996
SmiMI	CAYNNNNRTG	1 cut(s)	173
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	3 cut(s)	226, 304, 397
SsiI	CCGC	1 cut(s)	698
SspMI	CTAG	5 cut(s)	47, 77, 584, 713, 752
StyI	CCWWGG	1 cut(s)	712
TaaI	ACNGT	1 cut(s)	159
TaiI	ACGT	2 cut(s)	374, 537
TaqI	TCGA	2 cut(s)	246, 948
TaqII	GACCGA	1 cut(s)	912
TasI	AATT	3 cut(s)	226, 304, 397
TauI	GCSGC	1 cut(s)	701
TfiI	GAWTC	2 cut(s)	129, 1010
Tru1I	TTAA	4 cut(s)	488, 513, 591, 638
Tru9I	TTAA	4 cut(s)	488, 513, 591, 638
TscAI	CASTG	3 cut(s)	90, 156, 162
TseI	GCWGC	2 cut(s)	5, 560
TspDTI	ATGAA	4 cut(s)	55, 199, 828, 1023
TspRI	CASTG	3 cut(s)	90, 156, 162
XceI	RCATGY	2 cut(s)	206, 616
XmaJI	CCTAGG	1 cut(s)	712
XspI	CTAG	5 cut(s)	47, 77, 584, 713, 752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.