Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001603

Physical Location & Seq

Genomic Coordinates Reverse (-)

54263539 .. 54324278

Gene Structure 60740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG342900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGTTAACGCTCTACTATGGCTTCCTCAAGACAAATGGTTTGTTTCTCATCGCGATCAATTCCATTGGCTGCTTCATCGAAACTGTGTACCTTGTAATGTACATGATTTATGCACCACCAAAAGCCAGGATTTTCACAGCAAAGCTACTTGTTCTGTTTAATGTCTTGACTTATGGTTTGATCTTATTGGGTACAAGCCAAATCCCAAATGTTCTTCTGCGGTTGAAAGTTGTTGGATGGATTAATGTTGTGTTCAATGTCTCTGTGTTTGCTGCTCCTCTTAGTATTATGATTGATGAGATTGCAGAGCAGAAACTTGAGGAGCTTTCTCGACGATTCCATGGACGAAGTTCTCACCGAAGCAGCGGTGGCCGGCGTCATATACTTGGTAGAGGACAACGGCTAGATTCGTCTTGCTCACTGCCACCACTCGGATCTCGTCGGCGCGACGACTGGATTTTTTGGCTTAGATGGACGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008643 GO:0009555 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0015144 GO:0016020 GO:0016021 GO:0022414 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

160

Amino Acids

18.28

Weight (kDa)

10.22

Isoelectric Point (pI)

65.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	4 - 41	2e-08	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001603)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24880 FvH4_2g24890 FvH4_2g24900 FvH4_2g24901
malus_domestica	MD11G1299200.v1.1
prunus_persica	Prupe.8G253500_v2.0.a1
pyrus_communis	pycom11g26290
rosa_chinensis	RchiOBHm_Chr6g0292721 RchiOBHm_Chr6g0292761 RchiOBHm_Chr6g0292771 RchiOBHm_Chr6g0292781 RchiOBHm_Chr6g0292811
rosa_laevigata	RLG00000011990 RLG00000011991 RLG00000011992 RLG00000011993 RLG00000011996
rosa_multiflora	Rmu_sc0006513.1_g000007 Rmu_sc0006513.1_g000008 Rmu_sc0007398.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174680 Rroxscaffold_7G00174690 Rroxscaffold_7G00174700 Rroxscaffold_7G00174740
rosa_rugosa	Rorug06G0229200 Rorug06G0229500 Rorug06G0229600 Rorug06G0229900
rosa_samantha	Rh6AG342600 Rh6AG342900 Rh6AG343000 Rh6AG343100 Rh6AG343200 Rh6BG349800 Rh6BG349900 Rh6BG350000 Rh6BG350100 Rh6BG350200 Rh6CG356700 Rh6CG357000 Rh6CG357100 Rh6CG357300 Rh6DG342700 Rh6DG342800 Rh6DG343200
rosa_wichuraiana	Rw6G029880 Rw6G029890 Rw6G029900 Rw6G029910 Rw6G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	53, 447
AciI	CCGC	2 cut(s)	220, 366
AclWI	GGATC	1 cut(s)	442
AcoI	YGGCCR	1 cut(s)	370
AcyI	GRCGYC	1 cut(s)	376
AfaI	GTAC	3 cut(s)	89, 101, 193
AfiI	CCNNNNNNNGG	1 cut(s)	431
AgsI	TTSAA	2 cut(s)	226, 256
AjnI	CCWGG	1 cut(s)	125
AluBI	AGCT	2 cut(s)	145, 325
AluI	AGCT	2 cut(s)	145, 325
Alw26I	GTCTC	1 cut(s)	265
AlwI	GGATC	1 cut(s)	442
AoxI	GGCC	1 cut(s)	370
ApeKI	GCWGC	3 cut(s)	69, 272, 363
ArsI	GACNNNNNNTTYG	4 cut(s)	22, 54, 160, 192
AseI	ATTAAT	1 cut(s)	243
AspLEI	GCGC	1 cut(s)	447
AsuHPI	GGTGA	1 cut(s)	347
BbvI	GCAGC	3 cut(s)	56, 259, 375
BccI	CCATC	2 cut(s)	231, 465
BceAI	ACGGC	1 cut(s)	416
BciT130I	CCWGG	1 cut(s)	127
BcoDI	GTCTC	1 cut(s)	265
BfaI	CTAG	1 cut(s)	404
BisI	GCNGC	3 cut(s)	70, 273, 364
BlsI	GCNGC	3 cut(s)	71, 274, 365
Bme1390I	CCNGG	1 cut(s)	127
BmrFI	CCNGG	1 cut(s)	127
BpuEI	CTTGAG	2 cut(s)	11, 338
BsaHI	GRCGYC	1 cut(s)	376
BsaJI	CCNNGG	1 cut(s)	340
Bsc4I	CCNNNNNNNGG	1 cut(s)	431
Bse118I	RCCGGY	1 cut(s)	372
Bse1I	ACTGG	1 cut(s)	458
BseBI	CCWGG	1 cut(s)	127
BseDI	CCNNGG	1 cut(s)	340
BseGI	GGATG	1 cut(s)	242
BseLI	CCNNNNNNNGG	1 cut(s)	431
BseNI	ACTGG	1 cut(s)	458
BseRI	GAGGAG	2 cut(s)	267, 335
BseXI	GCAGC	3 cut(s)	56, 259, 375
Bsh1236I	CGCG	2 cut(s)	53, 447
BshFI	GGCC	1 cut(s)	372
BsiSI	CCGG	1 cut(s)	373
BslI	CCNNNNNNNGG	1 cut(s)	431
BsmAI	GTCTC	1 cut(s)	265
BsnI	GGCC	1 cut(s)	372
Bsp1407I	TGTACA	1 cut(s)	99
Bsp143I	GATC	3 cut(s)	54, 180, 434
Bsp19I	CCATGG	1 cut(s)	340
Bsp68I	TCGCGA	1 cut(s)	53
BspACI	CCGC	2 cut(s)	220, 366
BspANI	GGCC	1 cut(s)	372
BspFNI	CGCG	2 cut(s)	53, 447
BspPI	GGATC	1 cut(s)	442
BsrFI	RCCGGY	1 cut(s)	372
BsrGI	TGTACA	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	458
BssAI	RCCGGY	1 cut(s)	372
BssECI	CCNNGG	1 cut(s)	340
BssMI	GATC	3 cut(s)	54, 180, 434
BssNI	GRCGYC	1 cut(s)	376
BssT1I	CCWWGG	1 cut(s)	340
Bst2UI	CCWGG	1 cut(s)	127
Bst4CI	ACNGT	1 cut(s)	85
BstACI	GRCGYC	1 cut(s)	376
BstAUI	TGTACA	1 cut(s)	99
BstC8I	GCNNGC	1 cut(s)	374
BstDEI	CTNAG	2 cut(s)	281, 467
BstDSI	CCRYGG	1 cut(s)	340
BstF5I	GGATG	1 cut(s)	242
BstFNI	CGCG	2 cut(s)	53, 447
BstHHI	GCGC	1 cut(s)	447
BstKTI	GATC	3 cut(s)	57, 183, 437
BstMAI	GTCTC	1 cut(s)	265
BstMBI	GATC	3 cut(s)	54, 180, 434
BstMWI	GCNNNNNNNGC	1 cut(s)	369
BstNI	CCWGG	1 cut(s)	127
BstSCI	CCNGG	1 cut(s)	125
BstUI	CGCG	2 cut(s)	53, 447
BstV1I	GCAGC	3 cut(s)	56, 259, 375
BstX2I	RGATCY	1 cut(s)	434
BstYI	RGATCY	1 cut(s)	434
BsuRI	GGCC	1 cut(s)	372
BtgI	CCRYGG	1 cut(s)	340
BtgZI	GCGATG	1 cut(s)	34
BtsCI	GGATG	1 cut(s)	242
BtsI	GCAGTG	1 cut(s)	419
BtsIMutI	CAGTG	1 cut(s)	419
BtuMI	TCGCGA	1 cut(s)	53
Cac8I	GCNNGC	1 cut(s)	374
CfoI	GCGC	1 cut(s)	447
Cfr10I	RCCGGY	1 cut(s)	372
CseI	GACGC	1 cut(s)	365
Csp6I	GTAC	3 cut(s)	88, 100, 192
CviAII	CATG	2 cut(s)	103, 341
CviJI	RGCY	9 cut(s)	21, 69, 125, 145, 198, 325, 372, 403, 466
CviKI_1	RGCY	9 cut(s)	21, 69, 125, 145, 198, 325, 372, 403, 466
CviQI	GTAC	3 cut(s)	88, 100, 192
DdeI	CTNAG	2 cut(s)	281, 467
DpnI	GATC	3 cut(s)	56, 182, 436
DpnII	GATC	3 cut(s)	54, 180, 434
EaeI	YGGCCR	1 cut(s)	370
Eco130I	CCWWGG	1 cut(s)	340
EcoRII	CCWGG	1 cut(s)	125
EcoT14I	CCWWGG	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	340
FaeI	CATG	2 cut(s)	106, 344
FaiI	YATR	8 cut(s)	18, 104, 111, 174, 290, 342, 381, 383
FatI	CATG	2 cut(s)	102, 340
Fnu4HI	GCNGC	3 cut(s)	70, 273, 364
FokI	GGATG	1 cut(s)	249
Fsp4HI	GCNGC	3 cut(s)	70, 273, 364
FspBI	CTAG	1 cut(s)	404
GlaI	GCGC	1 cut(s)	446
GluI	GCNGC	3 cut(s)	70, 273, 364
HaeIII	GGCC	1 cut(s)	372
HapII	CCGG	1 cut(s)	373
HgaI	GACGC	1 cut(s)	365
HhaI	GCGC	1 cut(s)	447
Hin1I	GRCGYC	1 cut(s)	376
Hin1II	CATG	2 cut(s)	106, 344
Hin6I	GCGC	1 cut(s)	445
HinP1I	GCGC	1 cut(s)	445
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	2 cut(s)	336, 407
HpaI	GTTAAC	1 cut(s)	6
HpaII	CCGG	1 cut(s)	373
HphI	GGTGA	1 cut(s)	347
Hpy166II	GTNNAC	2 cut(s)	6, 88
Hpy188I	TCNGA	1 cut(s)	434
Hpy188III	TCNNGA	4 cut(s)	28, 52, 166, 330
Hpy8I	GTNNAC	2 cut(s)	6, 88
Hpy99I	CGWCG	3 cut(s)	336, 444, 452
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4V	TGCA	2 cut(s)	113, 305
HpyF10VI	GCNNNNNNNGC	1 cut(s)	369
HpyF3I	CTNAG	2 cut(s)	281, 467
Hsp92I	GRCGYC	1 cut(s)	376
Hsp92II	CATG	2 cut(s)	106, 344
HspAI	GCGC	1 cut(s)	445
KroI	GCCGGC	1 cut(s)	372
KroNI	GCCGGC	1 cut(s)	374
KspAI	GTTAAC	1 cut(s)	6
Kzo9I	GATC	3 cut(s)	54, 180, 434
LmnI	GCTCC	2 cut(s)	280, 322
LpnPI	CCDG	4 cut(s)	112, 139, 386, 439
Lsp1109I	GCAGC	3 cut(s)	56, 259, 375
MaeI	CTAG	1 cut(s)	404
MalI	GATC	3 cut(s)	56, 182, 436
MboI	GATC	3 cut(s)	54, 180, 434
MboII	GAAGA	1 cut(s)	206
MflI	RGATCY	1 cut(s)	434
MluCI	AATT	1 cut(s)	58
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	4 cut(s)	35, 288, 313, 386
MroNI	GCCGGC	1 cut(s)	372
MseI	TTAA	3 cut(s)	5, 159, 243
MspA1I	CMGCKG	1 cut(s)	366
MspI	CCGG	1 cut(s)	373
MspR9I	CCNGG	1 cut(s)	127
MvaI	CCWGG	1 cut(s)	127
MvnI	CGCG	2 cut(s)	53, 447
MwoI	GCNNNNNNNGC	1 cut(s)	369
NaeI	GCCGGC	1 cut(s)	374
NcoI	CCATGG	1 cut(s)	340
NdeII	GATC	3 cut(s)	54, 180, 434
NgoMIV	GCCGGC	1 cut(s)	372
NlaIII	CATG	2 cut(s)	106, 344
NruI	TCGCGA	1 cut(s)	53
PdiI	GCCGGC	1 cut(s)	374
PfeI	GAWTC	2 cut(s)	336, 407
PkrI	GCNGC	3 cut(s)	71, 274, 365
PshBI	ATTAAT	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	125
PsuI	RGATCY	1 cut(s)	434
RruI	TCGCGA	1 cut(s)	53
RsaI	GTAC	3 cut(s)	89, 101, 193
RsaNI	GTAC	3 cut(s)	88, 100, 192
SaqAI	TTAA	3 cut(s)	5, 159, 243
SatI	GCNGC	3 cut(s)	70, 273, 364
Sau3AI	GATC	3 cut(s)	54, 180, 434
ScrFI	CCNGG	1 cut(s)	127
SetI	ASST	3 cut(s)	93, 147, 327
SmlI	CTYRAG	2 cut(s)	26, 317
SmoI	CTYRAG	2 cut(s)	26, 317
Sse9I	AATT	1 cut(s)	58
SsiI	CCGC	2 cut(s)	220, 366
SspMI	CTAG	1 cut(s)	404
StyD4I	CCNGG	1 cut(s)	125
StyI	CCWWGG	1 cut(s)	340
TaaI	ACNGT	1 cut(s)	85
TaqI	TCGA	2 cut(s)	78, 331
TasI	AATT	1 cut(s)	58
TatI	WGTACW	1 cut(s)	99
TfiI	GAWTC	2 cut(s)	336, 407
Tru1I	TTAA	3 cut(s)	5, 159, 243
Tru9I	TTAA	3 cut(s)	5, 159, 243
TscAI	CASTG	1 cut(s)	426
TseI	GCWGC	3 cut(s)	69, 272, 363
TspDTI	ATGAA	1 cut(s)	64
TspRI	CASTG	1 cut(s)	426
VspI	ATTAAT	1 cut(s)	243
XspI	CTAG	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.